RSAT - peak-motifs result

Analysis: MYCOR_df2 (13/04/2025 17:28)

peak-motifs  -v 1 -title MYCOR_df2 -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172833_2025-04-13.172833_RwH1ct/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172833_2025-04-13.172833_RwH1ct

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: cgatga (sig=0.90; e-value=0.13) RC: tcatcg oligos_6nt_mkv3_m2 assembly: gcgata (sig=0.29; e-value=0.51) RC: tatcgc oligos_6nt_mkv3_m3 : (sig=; e-value=1) RC: oligos_6nt_mkv3_m4 : (sig=; e-value=1) RC: oligos_6nt_mkv3_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	Not a single significant pattern	[oligos_7nt_mkv4]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=0.90; evalue=0.13 gtCGATGAss SSTCATCGAC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 82 (37.79%) Max nb of predicted sites per peak: 5  (MYCO_R_Lsr2FLAG_merge_peak_61) Mean nb of predicted sites per peak: 1.41	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=0.29; evalue=0.51 yrGCGATAtc GATATCGCYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 63 (29.03%) Max nb of predicted sites per peak: 5  (MYCO_R_Lsr2FLAG_merge_peak_192) Mean nb of predicted sites per peak: 1.48	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title MYCOR_df2 -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172833_2025-04-13.172833_RwH1ct/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172833_2025-04-13.172833_RwH1ct

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172833_2025-04-13.172833_RwH1ct/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172833_2025-04-13.172833_RwH1ct/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172833_2025-04-13.172833_RwH1ct/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab