/var/www/html/rsat/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.173152_2025-04-13.173152_WAHiVU/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.173152_2025-04-13.173152_WAHiVU/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title SAM_MP5_24_df2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.173152_2025-04-13.173152_WAHiVU/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.173152_2025-04-13.173152_WAHiVU/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.173152_2025-04-13.173152_WAHiVU/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	683
	Sum of sequence lengths      	323241
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	473
	Possible positions           	322558
 Oligonucleotide statistics:
	Total occurrences    	317249
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	322558
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	92	1814
	2	-24	[-479,-460]	-469.5	103	1971
	3	-23	[-459,-440]	-449.5	109	2147
	4	-22	[-439,-420]	-429.5	114	2230
	5	-21	[-419,-400]	-409.5	121	2365
	6	-20	[-399,-380]	-389.5	130	2485
	7	-19	[-379,-360]	-369.5	143	2738
	8	-18	[-359,-340]	-349.5	153	2969
	9	-17	[-339,-320]	-329.5	168	3217
	10	-16	[-319,-300]	-309.5	185	3536
	11	-15	[-299,-280]	-289.5	207	3922
	12	-14	[-279,-260]	-269.5	225	4325
	13	-13	[-259,-240]	-249.5	246	4699
	14	-12	[-239,-220]	-229.5	278	5162
	15	-11	[-219,-200]	-209.5	308	5817
	16	-10	[-199,-180]	-189.5	345	6539
	17	-9	[-179,-160]	-169.5	397	7491
	18	-8	[-159,-140]	-149.5	473	8752
	19	-7	[-139,-120]	-129.5	550	10267
	20	-6	[-119,-100]	-109.5	619	11696
	21	-5	[-99,-80]	-89.5	683	13124
	22	-4	[-79,-60]	-69.5	683	13660
	23	-3	[-59,-40]	-49.5	683	13660
	24	-2	[-39,-20]	-29.5	683	13660
	25	-1	[-19,0]	-9.5	683	13660
	26	0	[1,20]	10.5	683	13660
	27	1	[21,40]	30.5	683	13660
	28	2	[41,60]	50.5	683	13660
	29	3	[61,80]	70.5	683	13660
	30	4	[81,100]	90.5	683	13003
	31	5	[101,120]	110.5	616	11566
	32	6	[121,140]	130.5	544	10117
	33	7	[141,160]	150.5	468	8597
	34	8	[161,180]	170.5	393	7385
	35	9	[181,200]	190.5	343	6466
	36	10	[201,220]	210.5	302	5757
	37	11	[221,240]	230.5	272	5105
	38	12	[241,260]	250.5	243	4658
	39	13	[261,280]	270.5	223	4289
	40	14	[281,300]	290.5	205	3874
	41	15	[301,320]	310.5	183	3505
	42	16	[321,340]	330.5	167	3183
	43	17	[341,360]	350.5	152	2950
	44	18	[361,380]	370.5	143	2714
	45	19	[381,400]	390.5	127	2470
	46	20	[401,420]	410.5	121	2349
	47	21	[421,440]	430.5	113	2221
	48	22	[441,460]	450.5	109	2137
	49	23	[461,480]	470.5	103	1948
	50	24	[481,500]	490.5	92	1718

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 10346 341.8 49 1.6e-45 2.6e-44 43.58 1 55 49 61 54 58 60 67 89 96 90 103 131 140 139 152 163 230 232 288 341 396 445 486 527 617 591 571 502 435 487 352 294 251 214 190 176 130 122 155 112 90 108 66 60 88 71 60 52 50 50
tt tt 10602 300.6 49 7.1e-38 1.1e-36 35.94 2 45 57 53 79 78 83 86 59 91 104 103 145 116 168 196 195 254 282 299 397 416 473 521 630 575 577 521 523 429 397 312 300 260 196 176 157 163 138 111 103 110 97 80 78 67 73 66 60 63 40
ta ta 5306 275.1 49 3.2e-33 5.1e-32 31.29 3 31 33 32 30 38 38 39 37 61 47 52 75 65 78 102 104 105 107 131 169 232 254 284 297 357 316 291 231 213 181 165 146 123 99 92 72 81 61 56 47 46 37 42 34 28 31 43 27 25 21
at at 10376 210.4 49 6.8e-22 1.1e-20 19.96 4 49 63 66 62 67 75 90 83 99 102 114 115 138 160 172 199 221 259 306 380 428 460 513 555 568 557 530 449 438 397 333 266 234 228 196 159 168 120 124 111 119 92 75 63 76 68 64 55 69 41
gc gc 31554 178.0 49 1.6e-16 2.5e-15 14.60 5 201 208 247 247 241 267 276 346 322 353 430 459 493 509 593 665 783 902 1065 1139 1277 1259 1233 1198 1175 1182 1198 1229 1307 1221 1197 1029 882 730 658 557 504 507 449 399 381 321 294 268 258 265 231 248 184 167
cg cg 37628 135.8 49 4.4e-10 7e-09 8.16 6 220 253 259 295 293 294 338 379 375 421 490 519 558 599 677 834 915 1112 1233 1376 1514 1472 1502 1475 1417 1444 1472 1534 1561 1513 1386 1276 1008 897 766 657 600 579 520 476 416 420 384 337 305 277 277 259 222 222
cc cc 29923 135.1 49 5.6e-10 8.9e-09 8.05 7 169 186 210 192 222 228 265 316 310 351 364 392 465 528 532 627 672 821 1006 1118 1214 1255 1145 1166 1145 1105 1144 1194 1267 1213 1114 984 792 697 663 533 504 455 434 393 346 320 287 301 228 245 230 219 192 164
gg gg 30908 89.3 49 3.8e-04 0.0061 2.21 8 191 206 203 228 238 255 285 305 285 336 430 413 488 501 571 654 685 825 1012 1149 1265 1339 1340 1177 1169 1251 1299 1353 1341 1183 1132 982 883 720 600 570 490 443 371 386 303 260 297 272 228 209 219 200 197 169
tg tg 18364 53.9 49 2.9e-01 4.7 -0.67 9 107 112 127 130 127 148 167 161 179 202 205 233 268 298 314 326 427 508 594 674 732 809 836 829 793 839 793 803 800 735 665 495 482 405 348 317 268 260 239 212 206 167 143 153 157 128 120 127 113 83
ct ct 16439 50.3 49 4.2e-01 6.8 -0.83 10 98 91 115 111 133 142 134 144 191 186 190 249 249 276 310 326 369 446 532 600 653 727 681 662 692 656 616 678 682 648 583 495 479 380 328 316 251 234 230 185 187 181 158 154 124 132 121 125 103 86
ac ac 18678 44.2 49 6.7e-01 11 -1.03 11 94 110 101 130 140 134 156 165 179 191 214 271 261 270 311 365 432 493 589 691 783 819 797 761 792 797 805 825 780 806 632 621 466 440 361 316 301 261 247 232 207 199 176 164 144 138 140 130 115 126
gt gt 18888 38.1 49 8.7e-01 14 -1.14 12 117 132 117 135 140 143 161 168 193 222 219 233 261 323 349 385 450 507 597 672 780 789 858 859 816 802 825 805 806 748 690 559 500 429 368 330 284 265 236 225 187 183 181 159 144 113 116 104 104 99
ga ga 21822 37.7 49 8.8e-01 14 -1.15 13 109 127 161 154 159 162 202 177 203 228 261 277 305 322 374 443 509 633 702 816 853 921 904 924 901 959 952 932 946 934 762 698 570 517 425 384 320 313 295 239 225 221 204 194 187 155 149 149 140 125
ag ag 16285 37.3 49 8.9e-01 14 -1.15 14 98 102 133 117 123 124 136 143 175 181 209 209 239 254 328 335 391 449 526 544 672 714 634 651 673 684 702 671 677 653 618 515 459 363 342 294 251 239 221 193 159 144 158 130 125 126 102 111 101 87
tc tc 21979 37.0 49 9.0e-01 14 -1.16 15 127 137 143 147 174 175 179 201 238 267 255 301 305 376 422 469 501 593 696 811 908 904 912 948 921 884 877 902 926 883 781 678 588 526 446 417 360 299 288 257 248 236 233 200 156 156 140 133 137 118
ca ca 18151 31.2 49 9.8e-01 16 -1.19 16 103 105 119 119 134 139 137 176 188 195 234 235 268 281 335 360 427 454 580 656 797 791 777 755 785 760 784 751 756 751 622 559 466 406 374 329 304 256 238 232 225 177 152 127 135 142 123 118 113 101 
 Host name	rsat
 Job started	2025-04-13.173157
 Job done	2025-04-13.173159
 Seconds	1.89
	user	1.89
	system	0.01
	cuser	0
;	csystem	0