peak-motifs SAM_MP5_24

motif discovery

oligos_6nt_mkv3

oligos_6nt_mkv3_m1	assembly: tcatcgccgag (sig=8.21; e-value=6.2e-09)	RC: ctcggcgatga
oligos_6nt_mkv3_m2	assembly: cgaggag (sig=7.43; e-value=3.7e-08)	RC: ctcctcg
oligos_6nt_mkv3_m3	assembly: cctgctca (sig=6.57; e-value=2.7e-07)	RC: tgagcagg
oligos_6nt_mkv3_m4	assembly: tgcgca (sig=5.21; e-value=6.2e-06)	RC: tgcgca
oligos_6nt_mkv3_m5	assembly: ctccag (sig=5.19; e-value=6.5e-06)	RC: ctggag

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_6nt

positions_6nt_m1	assembly: cgacggc (sig=2.71; e-value=0.0019)	RC: gccgtcg
positions_6nt_m2	assembly: cgaggcc (sig=1.76; e-value=0.017)	RC: ggcctcg
positions_6nt_m3	assembly: cgcggcc (sig=1.70; e-value=0.02)	RC: ggccgcg
positions_6nt_m4	assembly: gccgac (sig=1.57; e-value=0.027)	RC: gtcggc
positions_6nt_m5	assembly: gccaggc (sig=0.66; e-value=0.22)	RC: gcctggc

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_mkv4

oligos_7nt_mkv4_m1	assembly: cgacgag (sig=2.02; e-value=0.0095)	RC: ctcgtcg
oligos_7nt_mkv4_m2	assembly: cgaggag (sig=1.39; e-value=0.041)	RC: ctcctcg
oligos_7nt_mkv4_m3	assembly: tcgccga (sig=1.28; e-value=0.052)	RC: tcggcga
oligos_7nt_mkv4_m4	assembly: tcaccga (sig=1.12; e-value=0.076)	RC: tcggtga
oligos_7nt_mkv4_m5	assembly: cagctcg (sig=0.81; e-value=0.15)	RC: cgagctg

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_7nt

positions_7nt_m1	assembly: cgacggc (sig=2.05; e-value=0.0089)	RC: gccgtcg
positions_7nt_m2	assembly: cgaggcc (sig=0.12; e-value=0.76)	RC: ggcctcg
positions_7nt_m3	: (sig=; e-value=1)	RC:
positions_7nt_m4	: (sig=; e-value=1)	RC:
positions_7nt_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=8.21; evalue=6.2e-09

sgTcATCGCCgAgvw

WBCTCGGCGATGACS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 132 (19.33%)
Max nb of predicted sites per peak: 3
(SAM_Lsr2AHA_MP5_24h_merge_peak_600)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=7.43; evalue=3.7e-08

gwCGAGGArsw

WSYTCCTCGWC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 248 (36.31%)
Max nb of predicted sites per peak: 4
(SAM_Lsr2AHA_MP5_24h_merge_peak_696)
Mean nb of predicted sites per peak: 1.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=6.57; evalue=2.7e-07

gwcCTGCTCAhc

GDTGAGCAGGWC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 130 (19.03%)
Max nb of predicted sites per peak: 3
(SAM_Lsr2AHA_MP5_24h_merge_peak_20)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=5.21; evalue=6.2e-06

swTGCGCAws

SWTGCGCAWS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 128 (18.74%)
Max nb of predicted sites per peak: 6
(SAM_Lsr2AHA_MP5_24h_merge_peak_781)
Mean nb of predicted sites per peak: 2.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=5.19; evalue=6.5e-06

wbCTCCAGsw

WSCTGGAGVW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 202 (29.58%)
Max nb of predicted sites per peak: 6
(SAM_Lsr2AHA_MP5_24h_merge_peak_744)
Mean nb of predicted sites per peak: 1.38

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=2.71; evalue=0.0019

gwcgACGGCmw

WKGCCGTCGWC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 179 (26.21%)
Max nb of predicted sites per peak: 5
(SAM_Lsr2AHA_MP5_24h_merge_peak_446)
Mean nb of predicted sites per peak: 1.31

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=1.76; evalue=0.017

vwcgAGGCCst

ASGGCCTCGWB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 115 (16.84%)
Max nb of predicted sites per peak: 3
(SAM_Lsr2AHA_MP5_24h_merge_peak_715)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=1.70; evalue=0.02

dcsGCGGCCkk

MMGGCCGCSGH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 62 (9.08%)
Max nb of predicted sites per peak: 3
(SAM_Lsr2AHA_MP5_24h_merge_peak_545)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=1.57; evalue=0.027

wcGCCGACrd

HYGTCGGCGW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 111 (16.25%)
Max nb of predicted sites per peak: 2
(SAM_Lsr2AHA_MP5_24h_merge_peak_91)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=0.66; evalue=0.22

crgCCAGGcyh

DRGCCTGGCYG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 62 (9.08%)
Max nb of predicted sites per peak: 3
(SAM_Lsr2AHA_MP5_24h_merge_peak_684)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m1

k-mer sig=2.02; evalue=0.0095

gwCgAcgAGgw

WCCTCGTCGWC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 179 (26.21%)
Max nb of predicted sites per peak: 5
(SAM_Lsr2AHA_MP5_24h_merge_peak_570)
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m2

k-mer sig=1.39; evalue=0.041

rhcgAGgAGsw

WSCTCCTCGDY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 155 (22.69%)
Max nb of predicted sites per peak: 4
(SAM_Lsr2AHA_MP5_24h_merge_peak_510)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv4_m3

k-mer sig=1.28; evalue=0.052

smTcGCCgAgg

CCTCGGCGAKS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 162 (23.72%)
Max nb of predicted sites per peak: 3
(SAM_Lsr2AHA_MP5_24h_merge_peak_5)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv4_m4

k-mer sig=1.12; evalue=0.076

ssTCACcgAsm

KSTCGGTGASS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 120 (17.57%)
Max nb of predicted sites per peak: 3
(SAM_Lsr2AHA_MP5_24h_merge_peak_571)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv4_m5

k-mer sig=0.81; evalue=0.15

wsCAgCTcgkc

GMCGAGCTGSW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 108 (15.81%)
Max nb of predicted sites per peak: 3
(SAM_Lsr2AHA_MP5_24h_merge_peak_570)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=2.05; evalue=0.0089

gwCgACGGCrw

WYGCCGTCGWC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 189 (27.67%)
Max nb of predicted sites per peak: 5
(SAM_Lsr2AHA_MP5_24h_merge_peak_446)
Mean nb of predicted sites per peak: 1.37

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=0.12; evalue=0.76

gwCgAGGCCgw

WCGGCCTCGWC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 128 (18.74%)
Max nb of predicted sites per peak: 3
(SAM_Lsr2AHA_MP5_24h_merge_peak_715)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: SAM_MP5_24_df2 (13/04/2025 17:33)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results