; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/17/peak-motifs.2025-04-17.044940_2025-04-17.044940_gWHOHM/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/04/17/peak-motifs.2025-04-17.044940_2025-04-17.044940_gWHOHM/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/17/peak-motifs.2025-04-17.044940_2025-04-17.044940_gWHOHM/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/17/peak-motifs.2025-04-17.044940_2025-04-17.044940_gWHOHM/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	17	13	4	0	37	0	38	36	5	19	15
c	5	8	1	0	0	1	1	0	7	3	2
g	5	8	1	39	1	0	0	2	20	9	11
t	12	10	33	0	1	38	0	1	7	8	11
//
; Sites	39
>site_0
GATGACAAGTA
>site_1
GATGATAAAAG
>site_2
TAAGATAAGAG
>site_3
ATTGATAAGTG
>site_4
AATGATAATGA
>site_5
AATGATAAGAA
>site_6
ATAGATAAGAA
>site_7
GATGATAACAG
>site_8
ACTGATAACCT
>site_9
ACTGATAATAG
>site_10
TATGATAATCA
>site_11
TCAGATAAGCA
>site_12
TGTGATCAGGG
>site_13
AGGGATAAGTG
>site_14
TATGATAAAGA
>site_15
CGTGATAATGT
>site_16
CCTGATAACAC
>site_17
GCAGATAAGGA
>site_18
CTTGATAACAG
>site_19
TTTGATAATTT
>site_20
AGTGATATGAT
>site_21
ATTGTTAAGAT
>site_22
CGTGATAGGTG
>site_23
CTTGATAAAGG
>site_24
ATTGATAAAAA
>site_25
AGTGATAACTT
>site_26
ATTGATAAGAT
>site_27
TATGATAATTT
>site_28
TATGATAACAC
>site_29
AATGATAATAT
>site_30
TGTGATAAAAA
>site_31
TTTGATAAGGA
>site_32
GTTGATAAGAA
>site_33
AGTGATAAGAA
>site_34
ACTGATAACAT
>site_35
AATGATAGGGG
>site_36
TATGGTAAGGA
>site_37
ACTGATAAGAA
>site_38
TCCGATAAGTT
a	4	3	17	0	0	18	0	2	6	3
c	5	6	0	18	1	0	18	0	3	5
g	6	1	1	0	0	0	0	2	3	4
t	3	8	0	0	17	0	0	14	6	6
//
; Sites	18
>site_0
GGACTACGGT
>site_1
GTACTACAAG
>site_2
CCACTACGTG
>site_3
ACACCACTAC
>site_4
TAACTACTAA
>site_5
CAACTACTTC
>site_6
GCACTACTCT
>site_7
GCACTACTTT
>site_8
ATACTACATC
>site_9
AAACTACTTG
>site_10
GTACTACTGA
>site_11
TTACTACTTT
>site_12
TCACTACTCT
>site_13
GCACTACTCT
>site_14
ATACTACTAA
>site_15
CTACTACTGG
>site_16
CTACTACTAC
>site_17
CTGCTACTAC
; Host name	rsat
; Job started	2025-04-17.044947
; Job done	2025-04-17.044947
; Seconds	0.12
;	user	0.12
;	system	0
;	cuser	0
;	csystem	0
