; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/17/peak-motifs.2025-04-17.044940_2025-04-17.044940_gWHOHM/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/04/17/peak-motifs.2025-04-17.044940_2025-04-17.044940_gWHOHM/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/17/peak-motifs.2025-04-17.044940_2025-04-17.044940_gWHOHM/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/17/peak-motifs.2025-04-17.044940_2025-04-17.044940_gWHOHM/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	10	11	1	31	0	30	30	2	29	6	8
c	9	3	3	0	1	2	1	25	2	6	7
g	5	4	29	0	0	0	0	3	1	10	5
t	9	15	0	2	32	1	2	3	1	11	13
//
; Sites	33
>site_0
ATGATATCAGT
>site_1
CTGATATCATT
>site_2
AAGATAACCGT
>site_3
TAGATCACACA
>site_4
CAGATAACGGT
>site_5
TAGATAAGAAT
>site_6
ATGATAACAGC
>site_7
CTGATAACCTG
>site_8
CTGATAATAGA
>site_9
CTGATCACATG
>site_10
CTGATAACACT
>site_11
TAGATAATAAT
>site_12
TCGATAAAATA
>site_13
TTGATAACAGG
>site_14
TGGACAACAGT
>site_15
CACATAACATC
>site_16
CCGATAACAGC
>site_17
TAGATAACATC
>site_18
GAGATAAAATA
>site_19
AAGATAAGATA
>site_20
ACAATAACACT
>site_21
TTGTTAACAAG
>site_22
TTGTTAACAAT
>site_23
GGCATAACAAC
>site_24
GTGATAACTTA
>site_25
AAGATAACAGC
>site_26
GGGATACCACC
>site_27
ATGATAACACT
>site_28
ATGATAATATG
>site_29
AAGATTACACA
>site_30
GTGATAAGAAT
>site_31
CTGATAACATA
>site_32
AGCATAACAGT
a	15	13	25	22	27	0	4	0	27	3	20
c	2	2	0	1	0	2	23	0	0	5	0
g	6	2	2	0	0	1	0	27	0	3	1
t	4	10	0	4	0	24	0	0	0	16	6
//
; Sites	27
>site_0
TAAAAGCGATA
>site_1
GTAAATCGACA
>site_2
GTAAATCGACA
>site_3
AAAAATCGATA
>site_4
GGAAATAGACT
>site_5
TGAAATAGATA
>site_6
ATAAATAGATA
>site_7
GTAAATCGACA
>site_8
ATAAATCGAGA
>site_9
AAAAACCGATA
>site_10
TTACATCGAAT
>site_11
ACGAATCGATA
>site_12
AAATATCGATT
>site_13
ATAAATCGAGA
>site_14
ATAAATAGATG
>site_15
ACAAACCGACA
>site_16
GAAAATCGATT
>site_17
TTAAATCGATA
>site_18
AAATATCGATT
>site_19
AAAAATCGATA
>site_20
AAGAATCGATA
>site_21
CAATATCGATA
>site_22
GAATATCGATA
>site_23
AAAAATCGAAA
>site_24
AAAAATCGAGA
>site_25
AAAAATCGATA
>site_26
CTAAATCGAAT
; Host name	rsat
; Job started	2025-04-17.044950
; Job done	2025-04-17.044950
; Seconds	0.09
;	user	0.09
;	system	0.02
;	cuser	0
;	csystem	0
