peak-motifs H3K27ac_top2k

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=21.08; evalue=8.3e-22

ssCCGCCCCGCCGCss

SSGCGGCGGGGCGGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCCGCCCCGCCGCss

ZBED4 MA2328.1 D 10 0.6250 0.955 0.597 NA NA

PATZ1 MA1961.2 R 11 0.6875 0.841 0.578 NA NA

SP1 MA0079.5 R 9 0.5625 0.939 0.528 NA NA

Total matches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 285 (19.15%)
Max nb of predicted sites per peak: 57
(sum159_h3k27ac_peak113164::8:42895637-42897665)
Mean nb of predicted sites per peak: 7.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=16.17; evalue=6.8e-17

ccCCCTCCCtss

SSAGGGAGGGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccCCCTCCCtss

PATZ1 MA1961.2 R 11 0.9167 0.825 0.756 NA NA

ZNF148 MA1653.2 D 10 0.8333 0.892 0.743 NA NA

KLF5 MA0599.1 D 10 0.8333 0.834 0.695 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 281 (18.88%)
Max nb of predicted sites per peak: 9
(sum159_h3k27ac_peak115607::8:102810131-102811293)
Mean nb of predicted sites per peak: 1.51

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=15.86; evalue=1.4e-16

rrAAGGAAGGgrr

YYCCCTTCCTTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrAAGGAAGGgrr

Spi1 MA0080.7 D 12 0.8571 0.719 0.616 NA NA

SPIB MA0081.3 R 12 0.8571 0.715 0.612 NA NA

Erg MA0474.4 D 10 0.7692 0.758 0.583 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 129 (8.67%)
Max nb of predicted sites per peak: 5
(sum159_h3k27ac_peak62582::20:4483269-4484305)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=12.15; evalue=7.1e-13

wwAAACAAAww

WWTTTGTTTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwAAACAAAww

FOXD2 MA0847.4 D 11 1.0000 0.800 0.800 NA NA

Foxj3 MA0851.2 D 9 0.8182 0.865 0.708 NA NA

FOXE1 MA1487.3 D 11 0.9167 0.731 0.670 NA NA

Total matches= 41 (38 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 340 (22.85%)
Max nb of predicted sites per peak: 10
(sum159_h3k27ac_peak111904::8:11509735-11511901)
Mean nb of predicted sites per peak: 1.59

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=11.76; evalue=1.7e-12

arGAAAGAAAGgaa

TTCCTTTCTTTCYT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor arGAAAGAAAGgaa

Stat2 MA1623.2 D 10 0.7143 0.710 0.507 NA NA

ZNF184 MA2120.1 D 10 0.5882 0.747 0.440 NA NA

PRDM1 MA0508.4 R 7 0.5000 0.869 0.435 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 195 (13.10%)
Max nb of predicted sites per peak: 20
(sum159_h3k27ac_peak93124::5:112913174-112913558)
Mean nb of predicted sites per peak: 1.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=1.62; evalue=0.024

ssaGCCGGss

SSCCGGCTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaGCCGGss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 249 (16.73%)
Max nb of predicted sites per peak: 15
(sum159_h3k27ac_peak113164::8:42895637-42897665)
Mean nb of predicted sites per peak: 2.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=0.91; evalue=0.12

twyATATAtw

WATATATRWA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor twyATATAtw

TBP MA0108.3 D 7 0.7000 0.791 0.554 NA NA

ZNF211 MA1974.2 D 8 0.6667 0.803 0.535 NA NA

SRF MA0083.3 D 10 0.6250 0.737 0.461 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 217 (14.58%)
Max nb of predicted sites per peak: 62
(sum159_h3k27ac_peak28253::12:118217204-118218149)
Mean nb of predicted sites per peak: 2.93

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv4_m1

k-mer sig=10.81; evalue=1.5e-11

dvTGACTCAbh

DVTGAGTCABH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor dvTGACTCAbh

FOSL2 MA0478.2 D 10 0.9091 0.956 0.869 NA NA

BACH2 MA1101.3 D 11 1.0000 0.860 0.860 NA NA

NFE2 MA0841.2 D 10 0.9091 0.891 0.810 NA NA

Total matches= 35 (32 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 207 (13.91%)
Max nb of predicted sites per peak: 4
(sum159_h3k27ac_peak117674::8:143939748-143941004)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv4_m2

k-mer sig=9.84; evalue=1.4e-10

cscCCCCTCCCCss

SSGGGGAGGGGGSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cscCCCCTCCCCss

PATZ1 MA1961.2 R 11 0.7857 0.943 0.741 NA NA

ZNF148 MA1653.2 D 10 0.7143 0.982 0.702 NA NA

ZNF281 MA1630.3 R 10 0.7143 0.947 0.677 NA NA

Total matches= 28 (25 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 328 (22.04%)
Max nb of predicted sites per peak: 15
(sum159_h3k27ac_peak75614::3:169662196-169663574)
Mean nb of predicted sites per peak: 2.56

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv4_m3

k-mer sig=7.66; evalue=2.2e-08

ssGGCCCCGCCCCCss

SSGGGGGCGGGGCCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssGGCCCCGCCCCCss

PATZ1 MA1961.2 R 11 0.6875 0.916 0.630 NA NA

KLF16 MA0741.1 D 11 0.6875 0.855 0.588 NA NA

SP3 MA0746.3 D 11 0.6875 0.838 0.576 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 321 (21.57%)
Max nb of predicted sites per peak: 57
(sum159_h3k27ac_peak113164::8:42895637-42897665)
Mean nb of predicted sites per peak: 5.61

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m4

k-mer sig=6.74; evalue=1.8e-07

aaaaAAAArAAAAaa

TTTTTTYTTTTTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaaaAAAArAAAAaa

FOXD3 MA0041.3 D 14 0.9333 0.712 0.665 NA NA

Stat2 MA1623.2 D 10 0.6667 0.776 0.518 NA NA

FOXE1 MA1487.3 D 11 0.6875 0.722 0.496 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 389 (26.14%)
Max nb of predicted sites per peak: 38
(sum159_h3k27ac_peak68847::3:32452605-32453279)
Mean nb of predicted sites per peak: 4.81

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m5

k-mer sig=5.36; evalue=4.4e-06

ssCCCCaCCCCCss

SSGGGGGTGGGGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCCCCaCCCCCss

PATZ1 MA1961.2 R 11 0.7857 0.923 0.725 NA NA

KLF5 MA0599.1 D 10 0.7143 0.918 0.656 NA NA

ZNF281 MA1630.3 R 10 0.7143 0.913 0.652 NA NA

Total matches= 29 (26 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 335 (22.51%)
Max nb of predicted sites per peak: 14
(sum159_h3k27ac_peak113164::8:42895637-42897665)
Mean nb of predicted sites per peak: 2.44

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 positions_7nt_m1

k-mer sig=0.44; evalue=0.36

gsAGCCGGAgs

SCTCCGGCTSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsAGCCGGAgs

SPDEF MA0686.2 D 9 0.7500 0.775 0.581 NA NA

ELF4 MA0641.1 D 10 0.7692 0.705 0.542 NA NA

ELF2 MA1483.3 D 9 0.7500 0.718 0.538 NA NA

Total matches= 21 (18 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 136 (9.14%)
Max nb of predicted sites per peak: 3
(sum159_h3k27ac_peak73762::3:141485676-141488110)
Mean nb of predicted sites per peak: 1.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 positions_7nt_m2

k-mer sig=0.10; evalue=0.79

trTCTTGCAtw

WATGCAAGAYA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor trTCTTGCAtw

HLF MA0043.4 R 8 0.6667 0.743 0.495 NA NA

CEBPD MA0836.3 D 7 0.5833 0.845 0.493 NA NA

NFIL3 MA0025.3 R 8 0.6667 0.712 0.475 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 46 (3.09%)
Max nb of predicted sites per peak: 3
(sum159_h3k27ac_peak10205::1:225444696-225445874)
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 positions_7nt_m3

k-mer sig=0.02; evalue=0.95

ysACCTCAChs

SDGTGAGGTSR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ysACCTCAChs

RUNX3 MA0684.3 D 8 0.7273 0.833 0.606 NA NA

CREM MA0609.3 D 9 0.7500 0.710 0.532 NA NA

CREB1 MA0018.5 R 8 0.7273 0.716 0.521 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 92 (6.18%)
Max nb of predicted sites per peak: 3
(sum159_h3k27ac_peak28803::12:132446059-132446340)
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: H3K27ac_top2k_scorediff (23/04/2025 15:11)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaGCCGGss

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: H3K27ac_top2k_scorediff (23/04/2025 15:11)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssaGCCGGss Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaGCCGGss

Total matches= 0