position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD/data/sequences/peak-motifs_test_maxlen100_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title R1-plus -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD/data/sequences/peak-motifs_test_maxlen100_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 52 Sum of sequence lengths 5200 Min sequence length 0 Max sequence length 100 Average sequence length 100 Possible positions 5200 Sequences: # length ID 1 100 max_circle:1170-1271() 2 100 max_circle:1313-1414() 3 100 max_circle:1497-1598() 4 100 max_circle:1541-1642() 5 100 max_circle:1674-1775() 6 100 max_circle:1938-2039() 7 100 max_circle:2491-2592() 8 100 max_circle:2617-2718() 9 100 max_circle:2895-2996() 10 100 max_circle:2997-3098() 11 100 max_circle:3116-3217() 12 100 max_circle:3381-3482() 13 100 max_circle:3981-4082() 14 100 max_circle:4097-4198() 15 100 max_circle:4621-4722() 16 100 max_circle:4732-4833() 17 100 max_circle:4967-5068() 18 100 max_circle:5122-5223() 19 100 max_circle:5242-5343() 20 100 max_circle:6242-6343() 21 100 max_circle:6314-6415() 22 100 max_circle:6562-6663() 23 100 max_circle:6682-6783() 24 100 max_circle:7954-8055() 25 100 max_circle:7975-8076() 26 100 max_circle:8048-8149() 27 100 max_circle:8094-8195() 28 100 max_circle:9627-9728() 29 100 max_circle:10668-10769() 30 100 max_circle:10684-10785() 31 100 max_circle:10751-10852() 32 100 max_circle:12680-12781() 33 100 max_circle:13982-14083() 34 100 max_circle:14226-14327() 35 100 max_circle:14365-14466() 36 100 max_circle:14402-14503() 37 100 max_circle:16161-16262() 38 100 max_circle:16195-16296() 39 100 max_circle:16848-16949() 40 100 max_circle:16868-16969() 41 100 max_circle:17263-17364() 42 100 max_circle:17284-17385() 43 100 max_circle:17713-17814() 44 100 max_circle:17960-18061() 45 100 max_circle:18305-18406() 46 100 max_circle:18560-18661() 47 100 max_circle:19905-20006() 48 100 max_circle:19965-20066() 49 100 max_circle:20721-20822() 50 100 max_circle:20781-20882() 51 100 max_circle:22561-22662() 52 100 max_circle:22586-22687() Oligonucleotide statistics: Total occurrences 3710 Position interval parameters: Position interval 20 Number of windows 6 Total positions 5200 Degrees of freedom 5 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -3 [-59,-40] -49.5 52 520 2 -2 [-39,-20] -29.5 52 1040 3 -1 [-19,0] -9.5 52 1040 4 0 [1,20] 10.5 52 1040 5 1 [21,40] 30.5 52 1040 6 2 [41,60] 50.5 52 520 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -49.5 occurrences in window 1 [-59,-40] 11 -29.5 occurrences in window 2 [-39,-20] 12 -9.5 occurrences in window 3 [-19,0] 13 10.5 occurrences in window 4 [1,20] 14 30.5 occurrences in window 5 [21,40] 15 50.5 occurrences in window 6 [41,60] seq id occ chi2 df Pval Eval sig rank -49.5 -29.5 -9.5 10.5 30.5 50.5 Host name rsat Job started 2025-04-26.155741 Job done 2025-04-26.155741 Seconds 0.13 user 0.14 system 0.02 cuser 0.01 ; csystem 0