One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m1_shift1 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m1_shift1 (oligos_6nt_mkv1_m1)
; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=10; shift=1; ncol=11; -rrGAGGAGAr ; Alignment reference a 0 4 3 0 8 0 0 8 0 7 2 c 0 0 0 0 0 0 0 0 0 0 1 g 0 3 5 8 0 8 8 0 8 0 4 t 0 1 0 0 0 0 0 0 0 1 1

oligos_6nt_mkv1_m1_shift1 (oligos_6nt_mkv1_m1)
; oligos_6nt_mkv1_m1 versus oligos_6nt_mkv1_m1; m=1/7; ncol2=10; w=0; offset=0; strand=D; shift=1; score= 1; -rrGAGGAGAr ; cor=; Ncor= a 0 4 3 0 8 0 0 8 0 7 2 c 0 0 0 0 0 0 0 0 0 0 1 g 0 3 5 8 0 8 8 0 8 0 4 t 0 1 0 0 0 0 0 0 0 1 1

oligos_7nt_mkv1_m5_shift1 (oligos_7nt_mkv1_m5)
; oligos_6nt_mkv1_m1 versus oligos_7nt_mkv1_m5; m=2/7; ncol2=11; w=0; offset=0; strand=D; shift=1; score=0.765979; -drGGGGAGAr ; cor=; Ncor= a 0 5 7 1 2 2 1 13 0 12 5 c 0 0 0 0 1 0 0 0 0 1 1 g 0 4 4 12 10 11 12 0 13 0 6 t 0 4 2 0 0 0 0 0 0 0 1

oligos_6nt_mkv1_m3_shift1 (oligos_6nt_mkv1_m3)
; oligos_6nt_mkv1_m1 versus oligos_6nt_mkv1_m3; m=3/7; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.758648; -rrGGGGAGmr ; cor=; Ncor= a 0 4 3 0 0 1 0 10 0 5 4 c 0 0 2 0 0 0 0 0 0 3 1 g 0 4 4 10 10 9 10 0 10 2 3 t 0 2 1 0 0 0 0 0 0 0 2

oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2)
; oligos_6nt_mkv1_m1 versus oligos_7nt_mkv1_m2; m=4/7; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.750276; krGGAGGAGAr ; cor=; Ncor= a 2 5 2 0 10 1 0 12 1 12 3 c 1 1 0 0 0 0 0 0 0 0 1 g 3 5 9 12 2 11 12 0 10 0 8 t 6 1 1 0 0 0 0 0 1 0 0

oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)
; oligos_6nt_mkv1_m1 versus oligos_6nt_mkv1_m4; m=5/7; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.742591; arAGAGGGGwk ; cor=; Ncor= a 5 6 12 0 14 0 1 3 0 8 2 c 3 1 0 0 0 0 0 0 0 0 2 g 3 5 2 14 0 13 13 11 14 2 6 t 3 2 0 0 0 1 0 0 0 4 4

oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)
; oligos_6nt_mkv1_m1 versus oligos_7nt_mkv1_m1; m=6/7; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.668201; vrAGAGGGGAr ; cor=; Ncor= a 4 5 11 0 11 0 1 2 0 10 3 c 3 1 0 0 0 0 1 0 0 0 2 g 4 6 1 12 1 12 10 10 12 2 6 t 1 0 0 0 0 0 0 0 0 0 1

oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)
; oligos_6nt_mkv1_m1 versus oligos_6nt_mkv1_m2; m=7/7; ncol2=10; w=0; offset=2; strand=D; shift=3; score=0.620231; ---GrGGAGAG ; cor=; Ncor= a 0 0 0 2 6 0 0 10 0 10 0 c 0 0 0 0 1 0 0 0 0 0 0 g 0 0 0 8 3 10 10 0 10 0 10 t 0 0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m3_shift3 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)
; oligos_6nt_mkv1_m3; m=0 (reference); ncol1=10; shift=3; ncol=13; ---rrGGGGAGmr ; Alignment reference a 0 0 0 4 3 0 0 1 0 10 0 5 4 c 0 0 0 0 2 0 0 0 0 0 0 3 1 g 0 0 0 4 4 10 10 9 10 0 10 2 3 t 0 0 0 2 1 0 0 0 0 0 0 0 2

oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)
; oligos_6nt_mkv1_m3 versus oligos_6nt_mkv1_m3; m=1/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score= 1; ---rrGGGGAGmr ; cor=; Ncor= a 0 0 0 4 3 0 0 1 0 10 0 5 4 c 0 0 0 0 2 0 0 0 0 0 0 3 1 g 0 0 0 4 4 10 10 9 10 0 10 2 3 t 0 0 0 2 1 0 0 0 0 0 0 0 2

oligos_7nt_mkv1_m5_shift3 (oligos_7nt_mkv1_m5)
; oligos_6nt_mkv1_m3 versus oligos_7nt_mkv1_m5; m=2/7; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.854709; ---drGGGGAGAr ; cor=; Ncor= a 0 0 0 5 7 1 2 2 1 13 0 12 5 c 0 0 0 0 0 0 1 0 0 0 0 1 1 g 0 0 0 4 4 12 10 11 12 0 13 0 6 t 0 0 0 4 2 0 0 0 0 0 0 0 1

oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)
; oligos_6nt_mkv1_m3 versus oligos_6nt_mkv1_m2; m=3/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.784138; ---GrGGAGAGrk ; cor=; Ncor= a 0 0 0 2 6 0 0 10 0 10 0 3 2 c 0 0 0 0 1 0 0 0 0 0 0 2 1 g 0 0 0 8 3 10 10 0 10 0 10 3 4 t 0 0 0 0 0 0 0 0 0 0 0 2 3

oligos_6nt_mkv1_m1_shift3 (oligos_6nt_mkv1_m1)
; oligos_6nt_mkv1_m3 versus oligos_6nt_mkv1_m1; m=4/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.758648; ---rrGAGGAGAr ; cor=; Ncor= a 0 0 0 4 3 0 8 0 0 8 0 7 2 c 0 0 0 0 0 0 0 0 0 0 0 0 1 g 0 0 0 3 5 8 0 8 8 0 8 0 4 t 0 0 0 1 0 0 0 0 0 0 0 1 1

oligos_7nt_mkv1_m2_shift2 (oligos_7nt_mkv1_m2)
; oligos_6nt_mkv1_m3 versus oligos_7nt_mkv1_m2; m=5/7; ncol2=13; w=-1; offset=-1; strand=D; shift=2; score=0.598749; --krGGAGGAGAr ; cor=; Ncor= a 0 0 2 5 2 0 10 1 0 12 1 12 3 c 0 0 1 1 0 0 0 0 0 0 0 0 1 g 0 0 3 5 9 12 2 11 12 0 10 0 8 t 0 0 6 1 1 0 0 0 0 0 1 0 0

oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)
; oligos_6nt_mkv1_m3 versus oligos_7nt_mkv1_m1; m=6/7; ncol2=12; w=-3; offset=-3; strand=D; shift=0; score=0.573298; vrAGAGGGGArr- ; cor=; Ncor= a 4 5 11 0 11 0 1 2 0 10 3 7 0 c 3 1 0 0 0 0 1 0 0 0 2 2 0 g 4 6 1 12 1 12 10 10 12 2 6 3 0 t 1 0 0 0 0 0 0 0 0 0 1 0 0

oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)
; oligos_6nt_mkv1_m3 versus oligos_6nt_mkv1_m4; m=7/7; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.469919; arAGAGGGGwk-- ; cor=; Ncor= a 5 6 12 0 14 0 1 3 0 8 2 0 0 c 3 1 0 0 0 0 0 0 0 0 2 0 0 g 3 5 2 14 0 13 13 11 14 2 6 0 0 t 3 2 0 0 0 1 0 0 0 4 4 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m2_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2)
; oligos_7nt_mkv1_m2; m=0 (reference); ncol1=13; shift=0; ncol=13; krGGAGGAGArrr ; Alignment reference a 2 5 2 0 10 1 0 12 1 12 3 6 5 c 1 1 0 0 0 0 0 0 0 0 1 1 0 g 3 5 9 12 2 11 12 0 10 0 8 4 6 t 6 1 1 0 0 0 0 0 1 0 0 1 1

oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2)
; oligos_7nt_mkv1_m2 versus oligos_7nt_mkv1_m2; m=1/7; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; krGGAGGAGArrr ; cor=; Ncor= a 2 5 2 0 10 1 0 12 1 12 3 6 5 c 1 1 0 0 0 0 0 0 0 0 1 1 0 g 3 5 9 12 2 11 12 0 10 0 8 4 6 t 6 1 1 0 0 0 0 0 1 0 0 1 1

oligos_6nt_mkv1_m1_shift1 (oligos_6nt_mkv1_m1)
; oligos_7nt_mkv1_m2 versus oligos_6nt_mkv1_m1; m=2/7; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.750276; -rrGAGGAGAr-- ; cor=; Ncor= a 0 4 3 0 8 0 0 8 0 7 2 0 0 c 0 0 0 0 0 0 0 0 0 0 1 0 0 g 0 3 5 8 0 8 8 0 8 0 4 0 0 t 0 1 0 0 0 0 0 0 0 1 1 0 0

oligos_7nt_mkv1_m5_shift1 (oligos_7nt_mkv1_m5)
; oligos_7nt_mkv1_m2 versus oligos_7nt_mkv1_m5; m=3/7; ncol2=11; w=0; offset=1; strand=D; shift=1; score=0.72673; -drGGGGAGArr- ; cor=; Ncor= a 0 5 7 1 2 2 1 13 0 12 5 5 0 c 0 0 0 0 1 0 0 0 0 1 1 3 0 g 0 4 4 12 10 11 12 0 13 0 6 5 0 t 0 4 2 0 0 0 0 0 0 0 1 0 0

oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)
; oligos_7nt_mkv1_m2 versus oligos_6nt_mkv1_m2; m=4/7; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.725898; ---GrGGAGAGrk ; cor=; Ncor= a 0 0 0 2 6 0 0 10 0 10 0 3 2 c 0 0 0 0 1 0 0 0 0 0 0 2 1 g 0 0 0 8 3 10 10 0 10 0 10 3 4 t 0 0 0 0 0 0 0 0 0 0 0 2 3

oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)
; oligos_7nt_mkv1_m2 versus oligos_7nt_mkv1_m1; m=5/7; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.676652; vrAGAGGGGArr- ; cor=; Ncor= a 4 5 11 0 11 0 1 2 0 10 3 7 0 c 3 1 0 0 0 0 1 0 0 0 2 2 0 g 4 6 1 12 1 12 10 10 12 2 6 3 0 t 1 0 0 0 0 0 0 0 0 0 1 0 0

oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)
; oligos_7nt_mkv1_m2 versus oligos_6nt_mkv1_m4; m=6/7; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.613277; arAGAGGGGwk-- ; cor=; Ncor= a 5 6 12 0 14 0 1 3 0 8 2 0 0 c 3 1 0 0 0 0 0 0 0 0 2 0 0 g 3 5 2 14 0 13 13 11 14 2 6 0 0 t 3 2 0 0 0 1 0 0 0 4 4 0 0

oligos_6nt_mkv1_m3_shift1 (oligos_6nt_mkv1_m3)
; oligos_7nt_mkv1_m2 versus oligos_6nt_mkv1_m3; m=7/7; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.598749; -rrGGGGAGmr-- ; cor=; Ncor= a 0 4 3 0 0 1 0 10 0 5 4 0 0 c 0 0 2 0 0 0 0 0 0 3 1 0 0 g 0 4 4 10 10 9 10 0 10 2 3 0 0 t 0 2 1 0 0 0 0 0 0 0 2 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m5_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m5_shift0 (oligos_6nt_mkv1_m5)
; oligos_6nt_mkv1_m5; m=0 (reference); ncol1=10; shift=0; ncol=10; shCGrCGGhb ; Alignment reference a 1 2 0 0 4 0 1 0 2 0 c 2 2 7 0 0 7 0 0 2 2 g 4 1 0 7 2 0 5 7 1 3 t 0 2 0 0 1 0 1 0 2 2

oligos_6nt_mkv1_m5_shift0 (oligos_6nt_mkv1_m5)
; oligos_6nt_mkv1_m5 versus oligos_6nt_mkv1_m5; m=1/2; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; shCGrCGGhb ; cor=; Ncor= a 1 2 0 0 4 0 1 0 2 0 c 2 2 7 0 0 7 0 0 2 2 g 4 1 0 7 2 0 5 7 1 3 t 0 2 0 0 1 0 1 0 2 2

oligos_7nt_mkv1_m3_shift0 (oligos_7nt_mkv1_m3)
; oligos_6nt_mkv1_m5 versus oligos_7nt_mkv1_m3; m=2/2; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.672895; vbCGACGGmG ; cor=; Ncor= a 1 0 0 0 3 0 0 0 1 0 c 1 1 3 0 0 3 0 0 2 0 g 1 1 0 3 0 0 3 3 0 3 t 0 1 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m4_shift4 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m4_shift4 (oligos_7nt_mkv1_m4)
; oligos_7nt_mkv1_m4; m=0 (reference); ncol1=13; shift=4; ncol=17; ----rsGGcGGGCGGvg ; Alignment reference a 0 0 0 0 2 1 1 0 1 0 1 0 0 0 1 2 1 c 0 0 0 0 1 2 0 0 4 0 0 0 5 0 0 2 1 g 0 0 0 0 3 3 5 6 1 6 5 6 1 6 5 2 4 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv1_m4_shift4 (oligos_7nt_mkv1_m4)
; oligos_7nt_mkv1_m4 versus oligos_7nt_mkv1_m4; m=1/2; ncol2=13; w=0; offset=0; strand=D; shift=4; score= 1; ----rsGGcGGGCGGvg ; cor=; Ncor= a 0 0 0 0 2 1 1 0 1 0 1 0 0 0 1 2 1 c 0 0 0 0 1 2 0 0 4 0 0 0 5 0 0 2 1 g 0 0 0 0 3 3 5 6 1 6 5 6 1 6 5 2 4 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv1_m3_shift0 (oligos_7nt_mkv1_m3)
; oligos_7nt_mkv1_m4 versus oligos_7nt_mkv1_m3; m=2/2; ncol2=13; w=-4; offset=-4; strand=D; shift=0; score=0.415402; vbCGACGGmGrky---- ; cor=; Ncor= a 1 0 0 0 3 0 0 0 1 0 1 0 0 0 0 0 0 c 1 1 3 0 0 3 0 0 2 0 0 0 2 0 0 0 0 g 1 1 0 3 0 0 3 3 0 3 2 2 0 0 0 0 0 t 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m1_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)
; oligos_7nt_mkv1_m1; m=0 (reference); ncol1=12; shift=0; ncol=12; vrAGAGGGGArr ; Alignment reference a 4 5 11 0 11 0 1 2 0 10 3 7 c 3 1 0 0 0 0 1 0 0 0 2 2 g 4 6 1 12 1 12 10 10 12 2 6 3 t 1 0 0 0 0 0 0 0 0 0 1 0

oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)
; oligos_7nt_mkv1_m1 versus oligos_7nt_mkv1_m1; m=1/7; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; vrAGAGGGGArr ; cor=; Ncor= a 4 5 11 0 11 0 1 2 0 10 3 7 c 3 1 0 0 0 0 1 0 0 0 2 2 g 4 6 1 12 1 12 10 10 12 2 6 3 t 1 0 0 0 0 0 0 0 0 0 1 0

oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)
; oligos_7nt_mkv1_m1 versus oligos_6nt_mkv1_m4; m=2/7; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.886489; arAGAGGGGwk- ; cor=; Ncor= a 5 6 12 0 14 0 1 3 0 8 2 0 c 3 1 0 0 0 0 0 0 0 0 2 0 g 3 5 2 14 0 13 13 11 14 2 6 0 t 3 2 0 0 0 1 0 0 0 4 4 0

oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2)
; oligos_7nt_mkv1_m1 versus oligos_7nt_mkv1_m2; m=3/7; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.676652; krGGAGGAGArr ; cor=; Ncor= a 2 5 2 0 10 1 0 12 1 12 3 6 c 1 1 0 0 0 0 0 0 0 0 1 1 g 3 5 9 12 2 11 12 0 10 0 8 4 t 6 1 1 0 0 0 0 0 1 0 0 1

oligos_6nt_mkv1_m1_shift1 (oligos_6nt_mkv1_m1)
; oligos_7nt_mkv1_m1 versus oligos_6nt_mkv1_m1; m=4/7; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.668201; -rrGAGGAGAr- ; cor=; Ncor= a 0 4 3 0 8 0 0 8 0 7 2 0 c 0 0 0 0 0 0 0 0 0 0 1 0 g 0 3 5 8 0 8 8 0 8 0 4 0 t 0 1 0 0 0 0 0 0 0 1 1 0

oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)
; oligos_7nt_mkv1_m1 versus oligos_6nt_mkv1_m3; m=5/7; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.573298; ---rrGGGGAGm ; cor=; Ncor= a 0 0 0 4 3 0 0 1 0 10 0 5 c 0 0 0 0 2 0 0 0 0 0 0 3 g 0 0 0 4 4 10 10 9 10 0 10 2 t 0 0 0 2 1 0 0 0 0 0 0 0

oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)
; oligos_7nt_mkv1_m1 versus oligos_6nt_mkv1_m2; m=6/7; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.536436; ---GrGGAGAGr ; cor=; Ncor= a 0 0 0 2 6 0 0 10 0 10 0 3 c 0 0 0 0 1 0 0 0 0 0 0 2 g 0 0 0 8 3 10 10 0 10 0 10 3 t 0 0 0 0 0 0 0 0 0 0 0 2

oligos_7nt_mkv1_m5_shift3 (oligos_7nt_mkv1_m5)
; oligos_7nt_mkv1_m1 versus oligos_7nt_mkv1_m5; m=7/7; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.530882; ---drGGGGAGA ; cor=; Ncor= a 0 0 0 5 7 1 2 2 1 13 0 12 c 0 0 0 0 0 0 1 0 0 0 0 1 g 0 0 0 4 4 12 10 11 12 0 13 0 t 0 0 0 4 2 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m4_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)
; oligos_6nt_mkv1_m4; m=0 (reference); ncol1=11; shift=0; ncol=11; arAGAGGGGwk ; Alignment reference a 5 6 12 0 14 0 1 3 0 8 2 c 3 1 0 0 0 0 0 0 0 0 2 g 3 5 2 14 0 13 13 11 14 2 6 t 3 2 0 0 0 1 0 0 0 4 4

oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)
; oligos_6nt_mkv1_m4 versus oligos_6nt_mkv1_m4; m=1/7; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; arAGAGGGGwk ; cor=; Ncor= a 5 6 12 0 14 0 1 3 0 8 2 c 3 1 0 0 0 0 0 0 0 0 2 g 3 5 2 14 0 13 13 11 14 2 6 t 3 2 0 0 0 1 0 0 0 4 4

oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)
; oligos_6nt_mkv1_m4 versus oligos_7nt_mkv1_m1; m=2/7; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.886489; vrAGAGGGGAr ; cor=; Ncor= a 4 5 11 0 11 0 1 2 0 10 3 c 3 1 0 0 0 0 1 0 0 0 2 g 4 6 1 12 1 12 10 10 12 2 6 t 1 0 0 0 0 0 0 0 0 0 1

oligos_6nt_mkv1_m1_shift1 (oligos_6nt_mkv1_m1)
; oligos_6nt_mkv1_m4 versus oligos_6nt_mkv1_m1; m=3/7; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.742591; -rrGAGGAGAr ; cor=; Ncor= a 0 4 3 0 8 0 0 8 0 7 2 c 0 0 0 0 0 0 0 0 0 0 1 g 0 3 5 8 0 8 8 0 8 0 4 t 0 1 0 0 0 0 0 0 0 1 1

oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2)
; oligos_6nt_mkv1_m4 versus oligos_7nt_mkv1_m2; m=4/7; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.613277; krGGAGGAGAr ; cor=; Ncor= a 2 5 2 0 10 1 0 12 1 12 3 c 1 1 0 0 0 0 0 0 0 0 1 g 3 5 9 12 2 11 12 0 10 0 8 t 6 1 1 0 0 0 0 0 1 0 0

oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)
; oligos_6nt_mkv1_m4 versus oligos_6nt_mkv1_m3; m=5/7; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.469919; ---rrGGGGAG ; cor=; Ncor= a 0 0 0 4 3 0 0 1 0 10 0 c 0 0 0 0 2 0 0 0 0 0 0 g 0 0 0 4 4 10 10 9 10 0 10 t 0 0 0 2 1 0 0 0 0 0 0

oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)
; oligos_6nt_mkv1_m4 versus oligos_6nt_mkv1_m2; m=6/7; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.46351; ---GrGGAGAG ; cor=; Ncor= a 0 0 0 2 6 0 0 10 0 10 0 c 0 0 0 0 1 0 0 0 0 0 0 g 0 0 0 8 3 10 10 0 10 0 10 t 0 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv1_m5_shift3 (oligos_7nt_mkv1_m5)
; oligos_6nt_mkv1_m4 versus oligos_7nt_mkv1_m5; m=7/7; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.438426; ---drGGGGAG ; cor=; Ncor= a 0 0 0 5 7 1 2 2 1 13 0 c 0 0 0 0 0 0 1 0 0 0 0 g 0 0 0 4 4 12 10 11 12 0 13 t 0 0 0 4 2 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m5_shift3 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m5_shift3 (oligos_7nt_mkv1_m5)
; oligos_7nt_mkv1_m5; m=0 (reference); ncol1=11; shift=3; ncol=14; ---drGGGGAGArr ; Alignment reference a 0 0 0 5 7 1 2 2 1 13 0 12 5 5 c 0 0 0 0 0 0 1 0 0 0 0 1 1 3 g 0 0 0 4 4 12 10 11 12 0 13 0 6 5 t 0 0 0 4 2 0 0 0 0 0 0 0 1 0

oligos_7nt_mkv1_m5_shift3 (oligos_7nt_mkv1_m5)
; oligos_7nt_mkv1_m5 versus oligos_7nt_mkv1_m5; m=1/7; ncol2=11; w=0; offset=0; strand=D; shift=3; score= 1; ---drGGGGAGArr ; cor=; Ncor= a 0 0 0 5 7 1 2 2 1 13 0 12 5 5 c 0 0 0 0 0 0 1 0 0 0 0 1 1 3 g 0 0 0 4 4 12 10 11 12 0 13 0 6 5 t 0 0 0 4 2 0 0 0 0 0 0 0 1 0

oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)
; oligos_7nt_mkv1_m5 versus oligos_6nt_mkv1_m3; m=2/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.854709; ---rrGGGGAGmr- ; cor=; Ncor= a 0 0 0 4 3 0 0 1 0 10 0 5 4 0 c 0 0 0 0 2 0 0 0 0 0 0 3 1 0 g 0 0 0 4 4 10 10 9 10 0 10 2 3 0 t 0 0 0 2 1 0 0 0 0 0 0 0 2 0

oligos_6nt_mkv1_m1_shift3 (oligos_6nt_mkv1_m1)
; oligos_7nt_mkv1_m5 versus oligos_6nt_mkv1_m1; m=3/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.765979; ---rrGAGGAGAr- ; cor=; Ncor= a 0 0 0 4 3 0 8 0 0 8 0 7 2 0 c 0 0 0 0 0 0 0 0 0 0 0 0 1 0 g 0 0 0 3 5 8 0 8 8 0 8 0 4 0 t 0 0 0 1 0 0 0 0 0 0 0 1 1 0

oligos_7nt_mkv1_m2_shift2 (oligos_7nt_mkv1_m2)
; oligos_7nt_mkv1_m5 versus oligos_7nt_mkv1_m2; m=4/7; ncol2=13; w=-1; offset=-1; strand=D; shift=2; score=0.72673; --krGGAGGAGArr ; cor=; Ncor= a 0 0 2 5 2 0 10 1 0 12 1 12 3 6 c 0 0 1 1 0 0 0 0 0 0 0 0 1 1 g 0 0 3 5 9 12 2 11 12 0 10 0 8 4 t 0 0 6 1 1 0 0 0 0 0 1 0 0 1

oligos_6nt_mkv1_m2_shift5 (oligos_6nt_mkv1_m2)
; oligos_7nt_mkv1_m5 versus oligos_6nt_mkv1_m2; m=5/7; ncol2=10; w=0; offset=2; strand=D; shift=5; score=0.671512; -----GrGGAGAGr ; cor=; Ncor= a 0 0 0 0 0 2 6 0 0 10 0 10 0 3 c 0 0 0 0 0 0 1 0 0 0 0 0 0 2 g 0 0 0 0 0 8 3 10 10 0 10 0 10 3 t 0 0 0 0 0 0 0 0 0 0 0 0 0 2

oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)
; oligos_7nt_mkv1_m5 versus oligos_7nt_mkv1_m1; m=6/7; ncol2=12; w=-3; offset=-3; strand=D; shift=0; score=0.530882; vrAGAGGGGArr-- ; cor=; Ncor= a 4 5 11 0 11 0 1 2 0 10 3 7 0 0 c 3 1 0 0 0 0 1 0 0 0 2 2 0 0 g 4 6 1 12 1 12 10 10 12 2 6 3 0 0 t 1 0 0 0 0 0 0 0 0 0 1 0 0 0

oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)
; oligos_7nt_mkv1_m5 versus oligos_6nt_mkv1_m4; m=7/7; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.438426; arAGAGGGGwk--- ; cor=; Ncor= a 5 6 12 0 14 0 1 3 0 8 2 0 0 0 c 3 1 0 0 0 0 0 0 0 0 2 0 0 0 g 3 5 2 14 0 13 13 11 14 2 6 0 0 0 t 3 2 0 0 0 1 0 0 0 4 4 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m2_shift3 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)
; oligos_6nt_mkv1_m2; m=0 (reference); ncol1=10; shift=3; ncol=13; ---GrGGAGAGrk ; Alignment reference a 0 0 0 2 6 0 0 10 0 10 0 3 2 c 0 0 0 0 1 0 0 0 0 0 0 2 1 g 0 0 0 8 3 10 10 0 10 0 10 3 4 t 0 0 0 0 0 0 0 0 0 0 0 2 3

oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)
; oligos_6nt_mkv1_m2 versus oligos_6nt_mkv1_m2; m=1/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score= 1; ---GrGGAGAGrk ; cor=; Ncor= a 0 0 0 2 6 0 0 10 0 10 0 3 2 c 0 0 0 0 1 0 0 0 0 0 0 2 1 g 0 0 0 8 3 10 10 0 10 0 10 3 4 t 0 0 0 0 0 0 0 0 0 0 0 2 3

oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)
; oligos_6nt_mkv1_m2 versus oligos_6nt_mkv1_m3; m=2/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.784138; ---rrGGGGAGmr ; cor=; Ncor= a 0 0 0 4 3 0 0 1 0 10 0 5 4 c 0 0 0 0 2 0 0 0 0 0 0 3 1 g 0 0 0 4 4 10 10 9 10 0 10 2 3 t 0 0 0 2 1 0 0 0 0 0 0 0 2

oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2)
; oligos_6nt_mkv1_m2 versus oligos_7nt_mkv1_m2; m=3/7; ncol2=13; w=-3; offset=-3; strand=D; shift=0; score=0.725898; krGGAGGAGArrr ; cor=; Ncor= a 2 5 2 0 10 1 0 12 1 12 3 6 5 c 1 1 0 0 0 0 0 0 0 0 1 1 0 g 3 5 9 12 2 11 12 0 10 0 8 4 6 t 6 1 1 0 0 0 0 0 1 0 0 1 1

oligos_7nt_mkv1_m5_shift1 (oligos_7nt_mkv1_m5)
; oligos_6nt_mkv1_m2 versus oligos_7nt_mkv1_m5; m=4/7; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.671512; -drGGGGAGArr- ; cor=; Ncor= a 0 5 7 1 2 2 1 13 0 12 5 5 0 c 0 0 0 0 1 0 0 0 0 1 1 3 0 g 0 4 4 12 10 11 12 0 13 0 6 5 0 t 0 4 2 0 0 0 0 0 0 0 1 0 0

oligos_6nt_mkv1_m1_shift1 (oligos_6nt_mkv1_m1)
; oligos_6nt_mkv1_m2 versus oligos_6nt_mkv1_m1; m=5/7; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.620231; -rrGAGGAGAr-- ; cor=; Ncor= a 0 4 3 0 8 0 0 8 0 7 2 0 0 c 0 0 0 0 0 0 0 0 0 0 1 0 0 g 0 3 5 8 0 8 8 0 8 0 4 0 0 t 0 1 0 0 0 0 0 0 0 1 1 0 0

oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)
; oligos_6nt_mkv1_m2 versus oligos_7nt_mkv1_m1; m=6/7; ncol2=12; w=-3; offset=-3; strand=D; shift=0; score=0.536436; vrAGAGGGGArr- ; cor=; Ncor= a 4 5 11 0 11 0 1 2 0 10 3 7 0 c 3 1 0 0 0 0 1 0 0 0 2 2 0 g 4 6 1 12 1 12 10 10 12 2 6 3 0 t 1 0 0 0 0 0 0 0 0 0 1 0 0

oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)
; oligos_6nt_mkv1_m2 versus oligos_6nt_mkv1_m4; m=7/7; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.46351; arAGAGGGGwk-- ; cor=; Ncor= a 5 6 12 0 14 0 1 3 0 8 2 0 0 c 3 1 0 0 0 0 0 0 0 0 2 0 0 g 3 5 2 14 0 13 13 11 14 2 6 0 0 t 3 2 0 0 0 1 0 0 0 4 4 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m3_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m3_shift0 (oligos_7nt_mkv1_m3)
; oligos_7nt_mkv1_m3; m=0 (reference); ncol1=13; shift=0; ncol=13; vbCGACGGmGrky ; Alignment reference a 1 0 0 0 3 0 0 0 1 0 1 0 0 c 1 1 3 0 0 3 0 0 2 0 0 0 2 g 1 1 0 3 0 0 3 3 0 3 2 2 0 t 0 1 0 0 0 0 0 0 0 0 0 1 1

oligos_7nt_mkv1_m3_shift0 (oligos_7nt_mkv1_m3)
; oligos_7nt_mkv1_m3 versus oligos_7nt_mkv1_m3; m=1/3; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; vbCGACGGmGrky ; cor=; Ncor= a 1 0 0 0 3 0 0 0 1 0 1 0 0 c 1 1 3 0 0 3 0 0 2 0 0 0 2 g 1 1 0 3 0 0 3 3 0 3 2 2 0 t 0 1 0 0 0 0 0 0 0 0 0 1 1

oligos_6nt_mkv1_m5_shift0 (oligos_6nt_mkv1_m5)
; oligos_7nt_mkv1_m3 versus oligos_6nt_mkv1_m5; m=2/3; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.672895; shCGrCGGhb--- ; cor=; Ncor= a 1 2 0 0 4 0 1 0 2 0 0 0 0 c 2 2 7 0 0 7 0 0 2 2 0 0 0 g 4 1 0 7 2 0 5 7 1 3 0 0 0 t 0 2 0 0 1 0 1 0 2 2 0 0 0

oligos_7nt_mkv1_m4_shift4 (oligos_7nt_mkv1_m4)
; oligos_7nt_mkv1_m3 versus oligos_7nt_mkv1_m4; m=3/3; ncol2=13; w=0; offset=4; strand=D; shift=4; score=0.415402; ----rsGGcGGGC ; cor=; Ncor= a 0 0 0 0 2 1 1 0 1 0 1 0 0 c 0 0 0 0 1 2 0 0 4 0 0 0 5 g 0 0 0 0 3 3 5 6 1 6 5 6 1 t 0 0 0 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m1_shift1 (oligos_6nt_mkv1_m1)				; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=10; shift=1; ncol=11; -rrGAGGAGAr ; Alignment reference a 0 4 3 0 8 0 0 8 0 7 2 c 0 0 0 0 0 0 0 0 0 0 1 g 0 3 5 8 0 8 8 0 8 0 4 t 0 1 0 0 0 0 0 0 0 1 1
oligos_6nt_mkv1_m1_shift1 (oligos_6nt_mkv1_m1)				; oligos_6nt_mkv1_m1 versus oligos_6nt_mkv1_m1; m=1/7; ncol2=10; w=0; offset=0; strand=D; shift=1; score= 1; -rrGAGGAGAr ; cor=; Ncor= a 0 4 3 0 8 0 0 8 0 7 2 c 0 0 0 0 0 0 0 0 0 0 1 g 0 3 5 8 0 8 8 0 8 0 4 t 0 1 0 0 0 0 0 0 0 1 1
oligos_7nt_mkv1_m5_shift1 (oligos_7nt_mkv1_m5)				; oligos_6nt_mkv1_m1 versus oligos_7nt_mkv1_m5; m=2/7; ncol2=11; w=0; offset=0; strand=D; shift=1; score=0.765979; -drGGGGAGAr ; cor=; Ncor= a 0 5 7 1 2 2 1 13 0 12 5 c 0 0 0 0 1 0 0 0 0 1 1 g 0 4 4 12 10 11 12 0 13 0 6 t 0 4 2 0 0 0 0 0 0 0 1
oligos_6nt_mkv1_m3_shift1 (oligos_6nt_mkv1_m3)				; oligos_6nt_mkv1_m1 versus oligos_6nt_mkv1_m3; m=3/7; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.758648; -rrGGGGAGmr ; cor=; Ncor= a 0 4 3 0 0 1 0 10 0 5 4 c 0 0 2 0 0 0 0 0 0 3 1 g 0 4 4 10 10 9 10 0 10 2 3 t 0 2 1 0 0 0 0 0 0 0 2
oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2)				; oligos_6nt_mkv1_m1 versus oligos_7nt_mkv1_m2; m=4/7; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.750276; krGGAGGAGAr ; cor=; Ncor= a 2 5 2 0 10 1 0 12 1 12 3 c 1 1 0 0 0 0 0 0 0 0 1 g 3 5 9 12 2 11 12 0 10 0 8 t 6 1 1 0 0 0 0 0 1 0 0
oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)				; oligos_6nt_mkv1_m1 versus oligos_6nt_mkv1_m4; m=5/7; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.742591; arAGAGGGGwk ; cor=; Ncor= a 5 6 12 0 14 0 1 3 0 8 2 c 3 1 0 0 0 0 0 0 0 0 2 g 3 5 2 14 0 13 13 11 14 2 6 t 3 2 0 0 0 1 0 0 0 4 4
oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)				; oligos_6nt_mkv1_m1 versus oligos_7nt_mkv1_m1; m=6/7; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.668201; vrAGAGGGGAr ; cor=; Ncor= a 4 5 11 0 11 0 1 2 0 10 3 c 3 1 0 0 0 0 1 0 0 0 2 g 4 6 1 12 1 12 10 10 12 2 6 t 1 0 0 0 0 0 0 0 0 0 1
oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)				; oligos_6nt_mkv1_m1 versus oligos_6nt_mkv1_m2; m=7/7; ncol2=10; w=0; offset=2; strand=D; shift=3; score=0.620231; ---GrGGAGAG ; cor=; Ncor= a 0 0 0 2 6 0 0 10 0 10 0 c 0 0 0 0 1 0 0 0 0 0 0 g 0 0 0 8 3 10 10 0 10 0 10 t 0 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)				; oligos_6nt_mkv1_m3; m=0 (reference); ncol1=10; shift=3; ncol=13; ---rrGGGGAGmr ; Alignment reference a 0 0 0 4 3 0 0 1 0 10 0 5 4 c 0 0 0 0 2 0 0 0 0 0 0 3 1 g 0 0 0 4 4 10 10 9 10 0 10 2 3 t 0 0 0 2 1 0 0 0 0 0 0 0 2
oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)				; oligos_6nt_mkv1_m3 versus oligos_6nt_mkv1_m3; m=1/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score= 1; ---rrGGGGAGmr ; cor=; Ncor= a 0 0 0 4 3 0 0 1 0 10 0 5 4 c 0 0 0 0 2 0 0 0 0 0 0 3 1 g 0 0 0 4 4 10 10 9 10 0 10 2 3 t 0 0 0 2 1 0 0 0 0 0 0 0 2
oligos_7nt_mkv1_m5_shift3 (oligos_7nt_mkv1_m5)				; oligos_6nt_mkv1_m3 versus oligos_7nt_mkv1_m5; m=2/7; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.854709; ---drGGGGAGAr ; cor=; Ncor= a 0 0 0 5 7 1 2 2 1 13 0 12 5 c 0 0 0 0 0 0 1 0 0 0 0 1 1 g 0 0 0 4 4 12 10 11 12 0 13 0 6 t 0 0 0 4 2 0 0 0 0 0 0 0 1
oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)				; oligos_6nt_mkv1_m3 versus oligos_6nt_mkv1_m2; m=3/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.784138; ---GrGGAGAGrk ; cor=; Ncor= a 0 0 0 2 6 0 0 10 0 10 0 3 2 c 0 0 0 0 1 0 0 0 0 0 0 2 1 g 0 0 0 8 3 10 10 0 10 0 10 3 4 t 0 0 0 0 0 0 0 0 0 0 0 2 3
oligos_6nt_mkv1_m1_shift3 (oligos_6nt_mkv1_m1)				; oligos_6nt_mkv1_m3 versus oligos_6nt_mkv1_m1; m=4/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.758648; ---rrGAGGAGAr ; cor=; Ncor= a 0 0 0 4 3 0 8 0 0 8 0 7 2 c 0 0 0 0 0 0 0 0 0 0 0 0 1 g 0 0 0 3 5 8 0 8 8 0 8 0 4 t 0 0 0 1 0 0 0 0 0 0 0 1 1
oligos_7nt_mkv1_m2_shift2 (oligos_7nt_mkv1_m2)				; oligos_6nt_mkv1_m3 versus oligos_7nt_mkv1_m2; m=5/7; ncol2=13; w=-1; offset=-1; strand=D; shift=2; score=0.598749; --krGGAGGAGAr ; cor=; Ncor= a 0 0 2 5 2 0 10 1 0 12 1 12 3 c 0 0 1 1 0 0 0 0 0 0 0 0 1 g 0 0 3 5 9 12 2 11 12 0 10 0 8 t 0 0 6 1 1 0 0 0 0 0 1 0 0
oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)				; oligos_6nt_mkv1_m3 versus oligos_7nt_mkv1_m1; m=6/7; ncol2=12; w=-3; offset=-3; strand=D; shift=0; score=0.573298; vrAGAGGGGArr- ; cor=; Ncor= a 4 5 11 0 11 0 1 2 0 10 3 7 0 c 3 1 0 0 0 0 1 0 0 0 2 2 0 g 4 6 1 12 1 12 10 10 12 2 6 3 0 t 1 0 0 0 0 0 0 0 0 0 1 0 0
oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)				; oligos_6nt_mkv1_m3 versus oligos_6nt_mkv1_m4; m=7/7; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.469919; arAGAGGGGwk-- ; cor=; Ncor= a 5 6 12 0 14 0 1 3 0 8 2 0 0 c 3 1 0 0 0 0 0 0 0 0 2 0 0 g 3 5 2 14 0 13 13 11 14 2 6 0 0 t 3 2 0 0 0 1 0 0 0 4 4 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2)				; oligos_7nt_mkv1_m2; m=0 (reference); ncol1=13; shift=0; ncol=13; krGGAGGAGArrr ; Alignment reference a 2 5 2 0 10 1 0 12 1 12 3 6 5 c 1 1 0 0 0 0 0 0 0 0 1 1 0 g 3 5 9 12 2 11 12 0 10 0 8 4 6 t 6 1 1 0 0 0 0 0 1 0 0 1 1
oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2)				; oligos_7nt_mkv1_m2 versus oligos_7nt_mkv1_m2; m=1/7; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; krGGAGGAGArrr ; cor=; Ncor= a 2 5 2 0 10 1 0 12 1 12 3 6 5 c 1 1 0 0 0 0 0 0 0 0 1 1 0 g 3 5 9 12 2 11 12 0 10 0 8 4 6 t 6 1 1 0 0 0 0 0 1 0 0 1 1
oligos_6nt_mkv1_m1_shift1 (oligos_6nt_mkv1_m1)				; oligos_7nt_mkv1_m2 versus oligos_6nt_mkv1_m1; m=2/7; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.750276; -rrGAGGAGAr-- ; cor=; Ncor= a 0 4 3 0 8 0 0 8 0 7 2 0 0 c 0 0 0 0 0 0 0 0 0 0 1 0 0 g 0 3 5 8 0 8 8 0 8 0 4 0 0 t 0 1 0 0 0 0 0 0 0 1 1 0 0
oligos_7nt_mkv1_m5_shift1 (oligos_7nt_mkv1_m5)				; oligos_7nt_mkv1_m2 versus oligos_7nt_mkv1_m5; m=3/7; ncol2=11; w=0; offset=1; strand=D; shift=1; score=0.72673; -drGGGGAGArr- ; cor=; Ncor= a 0 5 7 1 2 2 1 13 0 12 5 5 0 c 0 0 0 0 1 0 0 0 0 1 1 3 0 g 0 4 4 12 10 11 12 0 13 0 6 5 0 t 0 4 2 0 0 0 0 0 0 0 1 0 0
oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)				; oligos_7nt_mkv1_m2 versus oligos_6nt_mkv1_m2; m=4/7; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.725898; ---GrGGAGAGrk ; cor=; Ncor= a 0 0 0 2 6 0 0 10 0 10 0 3 2 c 0 0 0 0 1 0 0 0 0 0 0 2 1 g 0 0 0 8 3 10 10 0 10 0 10 3 4 t 0 0 0 0 0 0 0 0 0 0 0 2 3
oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)				; oligos_7nt_mkv1_m2 versus oligos_7nt_mkv1_m1; m=5/7; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.676652; vrAGAGGGGArr- ; cor=; Ncor= a 4 5 11 0 11 0 1 2 0 10 3 7 0 c 3 1 0 0 0 0 1 0 0 0 2 2 0 g 4 6 1 12 1 12 10 10 12 2 6 3 0 t 1 0 0 0 0 0 0 0 0 0 1 0 0
oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)				; oligos_7nt_mkv1_m2 versus oligos_6nt_mkv1_m4; m=6/7; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.613277; arAGAGGGGwk-- ; cor=; Ncor= a 5 6 12 0 14 0 1 3 0 8 2 0 0 c 3 1 0 0 0 0 0 0 0 0 2 0 0 g 3 5 2 14 0 13 13 11 14 2 6 0 0 t 3 2 0 0 0 1 0 0 0 4 4 0 0
oligos_6nt_mkv1_m3_shift1 (oligos_6nt_mkv1_m3)				; oligos_7nt_mkv1_m2 versus oligos_6nt_mkv1_m3; m=7/7; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.598749; -rrGGGGAGmr-- ; cor=; Ncor= a 0 4 3 0 0 1 0 10 0 5 4 0 0 c 0 0 2 0 0 0 0 0 0 3 1 0 0 g 0 4 4 10 10 9 10 0 10 2 3 0 0 t 0 2 1 0 0 0 0 0 0 0 2 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)				; oligos_7nt_mkv1_m1; m=0 (reference); ncol1=12; shift=0; ncol=12; vrAGAGGGGArr ; Alignment reference a 4 5 11 0 11 0 1 2 0 10 3 7 c 3 1 0 0 0 0 1 0 0 0 2 2 g 4 6 1 12 1 12 10 10 12 2 6 3 t 1 0 0 0 0 0 0 0 0 0 1 0
oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)				; oligos_7nt_mkv1_m1 versus oligos_7nt_mkv1_m1; m=1/7; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; vrAGAGGGGArr ; cor=; Ncor= a 4 5 11 0 11 0 1 2 0 10 3 7 c 3 1 0 0 0 0 1 0 0 0 2 2 g 4 6 1 12 1 12 10 10 12 2 6 3 t 1 0 0 0 0 0 0 0 0 0 1 0
oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)				; oligos_7nt_mkv1_m1 versus oligos_6nt_mkv1_m4; m=2/7; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.886489; arAGAGGGGwk- ; cor=; Ncor= a 5 6 12 0 14 0 1 3 0 8 2 0 c 3 1 0 0 0 0 0 0 0 0 2 0 g 3 5 2 14 0 13 13 11 14 2 6 0 t 3 2 0 0 0 1 0 0 0 4 4 0
oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2)				; oligos_7nt_mkv1_m1 versus oligos_7nt_mkv1_m2; m=3/7; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.676652; krGGAGGAGArr ; cor=; Ncor= a 2 5 2 0 10 1 0 12 1 12 3 6 c 1 1 0 0 0 0 0 0 0 0 1 1 g 3 5 9 12 2 11 12 0 10 0 8 4 t 6 1 1 0 0 0 0 0 1 0 0 1
oligos_6nt_mkv1_m1_shift1 (oligos_6nt_mkv1_m1)				; oligos_7nt_mkv1_m1 versus oligos_6nt_mkv1_m1; m=4/7; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.668201; -rrGAGGAGAr- ; cor=; Ncor= a 0 4 3 0 8 0 0 8 0 7 2 0 c 0 0 0 0 0 0 0 0 0 0 1 0 g 0 3 5 8 0 8 8 0 8 0 4 0 t 0 1 0 0 0 0 0 0 0 1 1 0
oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)				; oligos_7nt_mkv1_m1 versus oligos_6nt_mkv1_m3; m=5/7; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.573298; ---rrGGGGAGm ; cor=; Ncor= a 0 0 0 4 3 0 0 1 0 10 0 5 c 0 0 0 0 2 0 0 0 0 0 0 3 g 0 0 0 4 4 10 10 9 10 0 10 2 t 0 0 0 2 1 0 0 0 0 0 0 0
oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)				; oligos_7nt_mkv1_m1 versus oligos_6nt_mkv1_m2; m=6/7; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.536436; ---GrGGAGAGr ; cor=; Ncor= a 0 0 0 2 6 0 0 10 0 10 0 3 c 0 0 0 0 1 0 0 0 0 0 0 2 g 0 0 0 8 3 10 10 0 10 0 10 3 t 0 0 0 0 0 0 0 0 0 0 0 2
oligos_7nt_mkv1_m5_shift3 (oligos_7nt_mkv1_m5)				; oligos_7nt_mkv1_m1 versus oligos_7nt_mkv1_m5; m=7/7; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.530882; ---drGGGGAGA ; cor=; Ncor= a 0 0 0 5 7 1 2 2 1 13 0 12 c 0 0 0 0 0 0 1 0 0 0 0 1 g 0 0 0 4 4 12 10 11 12 0 13 0 t 0 0 0 4 2 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)				; oligos_6nt_mkv1_m4; m=0 (reference); ncol1=11; shift=0; ncol=11; arAGAGGGGwk ; Alignment reference a 5 6 12 0 14 0 1 3 0 8 2 c 3 1 0 0 0 0 0 0 0 0 2 g 3 5 2 14 0 13 13 11 14 2 6 t 3 2 0 0 0 1 0 0 0 4 4
oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)				; oligos_6nt_mkv1_m4 versus oligos_6nt_mkv1_m4; m=1/7; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; arAGAGGGGwk ; cor=; Ncor= a 5 6 12 0 14 0 1 3 0 8 2 c 3 1 0 0 0 0 0 0 0 0 2 g 3 5 2 14 0 13 13 11 14 2 6 t 3 2 0 0 0 1 0 0 0 4 4
oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)				; oligos_6nt_mkv1_m4 versus oligos_7nt_mkv1_m1; m=2/7; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.886489; vrAGAGGGGAr ; cor=; Ncor= a 4 5 11 0 11 0 1 2 0 10 3 c 3 1 0 0 0 0 1 0 0 0 2 g 4 6 1 12 1 12 10 10 12 2 6 t 1 0 0 0 0 0 0 0 0 0 1
oligos_6nt_mkv1_m1_shift1 (oligos_6nt_mkv1_m1)				; oligos_6nt_mkv1_m4 versus oligos_6nt_mkv1_m1; m=3/7; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.742591; -rrGAGGAGAr ; cor=; Ncor= a 0 4 3 0 8 0 0 8 0 7 2 c 0 0 0 0 0 0 0 0 0 0 1 g 0 3 5 8 0 8 8 0 8 0 4 t 0 1 0 0 0 0 0 0 0 1 1
oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2)				; oligos_6nt_mkv1_m4 versus oligos_7nt_mkv1_m2; m=4/7; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.613277; krGGAGGAGAr ; cor=; Ncor= a 2 5 2 0 10 1 0 12 1 12 3 c 1 1 0 0 0 0 0 0 0 0 1 g 3 5 9 12 2 11 12 0 10 0 8 t 6 1 1 0 0 0 0 0 1 0 0
oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)				; oligos_6nt_mkv1_m4 versus oligos_6nt_mkv1_m3; m=5/7; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.469919; ---rrGGGGAG ; cor=; Ncor= a 0 0 0 4 3 0 0 1 0 10 0 c 0 0 0 0 2 0 0 0 0 0 0 g 0 0 0 4 4 10 10 9 10 0 10 t 0 0 0 2 1 0 0 0 0 0 0
oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)				; oligos_6nt_mkv1_m4 versus oligos_6nt_mkv1_m2; m=6/7; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.46351; ---GrGGAGAG ; cor=; Ncor= a 0 0 0 2 6 0 0 10 0 10 0 c 0 0 0 0 1 0 0 0 0 0 0 g 0 0 0 8 3 10 10 0 10 0 10 t 0 0 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv1_m5_shift3 (oligos_7nt_mkv1_m5)				; oligos_6nt_mkv1_m4 versus oligos_7nt_mkv1_m5; m=7/7; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.438426; ---drGGGGAG ; cor=; Ncor= a 0 0 0 5 7 1 2 2 1 13 0 c 0 0 0 0 0 0 1 0 0 0 0 g 0 0 0 4 4 12 10 11 12 0 13 t 0 0 0 4 2 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m5_shift3 (oligos_7nt_mkv1_m5)				; oligos_7nt_mkv1_m5; m=0 (reference); ncol1=11; shift=3; ncol=14; ---drGGGGAGArr ; Alignment reference a 0 0 0 5 7 1 2 2 1 13 0 12 5 5 c 0 0 0 0 0 0 1 0 0 0 0 1 1 3 g 0 0 0 4 4 12 10 11 12 0 13 0 6 5 t 0 0 0 4 2 0 0 0 0 0 0 0 1 0
oligos_7nt_mkv1_m5_shift3 (oligos_7nt_mkv1_m5)				; oligos_7nt_mkv1_m5 versus oligos_7nt_mkv1_m5; m=1/7; ncol2=11; w=0; offset=0; strand=D; shift=3; score= 1; ---drGGGGAGArr ; cor=; Ncor= a 0 0 0 5 7 1 2 2 1 13 0 12 5 5 c 0 0 0 0 0 0 1 0 0 0 0 1 1 3 g 0 0 0 4 4 12 10 11 12 0 13 0 6 5 t 0 0 0 4 2 0 0 0 0 0 0 0 1 0
oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)				; oligos_7nt_mkv1_m5 versus oligos_6nt_mkv1_m3; m=2/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.854709; ---rrGGGGAGmr- ; cor=; Ncor= a 0 0 0 4 3 0 0 1 0 10 0 5 4 0 c 0 0 0 0 2 0 0 0 0 0 0 3 1 0 g 0 0 0 4 4 10 10 9 10 0 10 2 3 0 t 0 0 0 2 1 0 0 0 0 0 0 0 2 0
oligos_6nt_mkv1_m1_shift3 (oligos_6nt_mkv1_m1)				; oligos_7nt_mkv1_m5 versus oligos_6nt_mkv1_m1; m=3/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.765979; ---rrGAGGAGAr- ; cor=; Ncor= a 0 0 0 4 3 0 8 0 0 8 0 7 2 0 c 0 0 0 0 0 0 0 0 0 0 0 0 1 0 g 0 0 0 3 5 8 0 8 8 0 8 0 4 0 t 0 0 0 1 0 0 0 0 0 0 0 1 1 0
oligos_7nt_mkv1_m2_shift2 (oligos_7nt_mkv1_m2)				; oligos_7nt_mkv1_m5 versus oligos_7nt_mkv1_m2; m=4/7; ncol2=13; w=-1; offset=-1; strand=D; shift=2; score=0.72673; --krGGAGGAGArr ; cor=; Ncor= a 0 0 2 5 2 0 10 1 0 12 1 12 3 6 c 0 0 1 1 0 0 0 0 0 0 0 0 1 1 g 0 0 3 5 9 12 2 11 12 0 10 0 8 4 t 0 0 6 1 1 0 0 0 0 0 1 0 0 1
oligos_6nt_mkv1_m2_shift5 (oligos_6nt_mkv1_m2)				; oligos_7nt_mkv1_m5 versus oligos_6nt_mkv1_m2; m=5/7; ncol2=10; w=0; offset=2; strand=D; shift=5; score=0.671512; -----GrGGAGAGr ; cor=; Ncor= a 0 0 0 0 0 2 6 0 0 10 0 10 0 3 c 0 0 0 0 0 0 1 0 0 0 0 0 0 2 g 0 0 0 0 0 8 3 10 10 0 10 0 10 3 t 0 0 0 0 0 0 0 0 0 0 0 0 0 2
oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)				; oligos_7nt_mkv1_m5 versus oligos_7nt_mkv1_m1; m=6/7; ncol2=12; w=-3; offset=-3; strand=D; shift=0; score=0.530882; vrAGAGGGGArr-- ; cor=; Ncor= a 4 5 11 0 11 0 1 2 0 10 3 7 0 0 c 3 1 0 0 0 0 1 0 0 0 2 2 0 0 g 4 6 1 12 1 12 10 10 12 2 6 3 0 0 t 1 0 0 0 0 0 0 0 0 0 1 0 0 0
oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)				; oligos_7nt_mkv1_m5 versus oligos_6nt_mkv1_m4; m=7/7; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.438426; arAGAGGGGwk--- ; cor=; Ncor= a 5 6 12 0 14 0 1 3 0 8 2 0 0 0 c 3 1 0 0 0 0 0 0 0 0 2 0 0 0 g 3 5 2 14 0 13 13 11 14 2 6 0 0 0 t 3 2 0 0 0 1 0 0 0 4 4 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)				; oligos_6nt_mkv1_m2; m=0 (reference); ncol1=10; shift=3; ncol=13; ---GrGGAGAGrk ; Alignment reference a 0 0 0 2 6 0 0 10 0 10 0 3 2 c 0 0 0 0 1 0 0 0 0 0 0 2 1 g 0 0 0 8 3 10 10 0 10 0 10 3 4 t 0 0 0 0 0 0 0 0 0 0 0 2 3
oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)				; oligos_6nt_mkv1_m2 versus oligos_6nt_mkv1_m2; m=1/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score= 1; ---GrGGAGAGrk ; cor=; Ncor= a 0 0 0 2 6 0 0 10 0 10 0 3 2 c 0 0 0 0 1 0 0 0 0 0 0 2 1 g 0 0 0 8 3 10 10 0 10 0 10 3 4 t 0 0 0 0 0 0 0 0 0 0 0 2 3
oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)				; oligos_6nt_mkv1_m2 versus oligos_6nt_mkv1_m3; m=2/7; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.784138; ---rrGGGGAGmr ; cor=; Ncor= a 0 0 0 4 3 0 0 1 0 10 0 5 4 c 0 0 0 0 2 0 0 0 0 0 0 3 1 g 0 0 0 4 4 10 10 9 10 0 10 2 3 t 0 0 0 2 1 0 0 0 0 0 0 0 2
oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2)				; oligos_6nt_mkv1_m2 versus oligos_7nt_mkv1_m2; m=3/7; ncol2=13; w=-3; offset=-3; strand=D; shift=0; score=0.725898; krGGAGGAGArrr ; cor=; Ncor= a 2 5 2 0 10 1 0 12 1 12 3 6 5 c 1 1 0 0 0 0 0 0 0 0 1 1 0 g 3 5 9 12 2 11 12 0 10 0 8 4 6 t 6 1 1 0 0 0 0 0 1 0 0 1 1
oligos_7nt_mkv1_m5_shift1 (oligos_7nt_mkv1_m5)				; oligos_6nt_mkv1_m2 versus oligos_7nt_mkv1_m5; m=4/7; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.671512; -drGGGGAGArr- ; cor=; Ncor= a 0 5 7 1 2 2 1 13 0 12 5 5 0 c 0 0 0 0 1 0 0 0 0 1 1 3 0 g 0 4 4 12 10 11 12 0 13 0 6 5 0 t 0 4 2 0 0 0 0 0 0 0 1 0 0
oligos_6nt_mkv1_m1_shift1 (oligos_6nt_mkv1_m1)				; oligos_6nt_mkv1_m2 versus oligos_6nt_mkv1_m1; m=5/7; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.620231; -rrGAGGAGAr-- ; cor=; Ncor= a 0 4 3 0 8 0 0 8 0 7 2 0 0 c 0 0 0 0 0 0 0 0 0 0 1 0 0 g 0 3 5 8 0 8 8 0 8 0 4 0 0 t 0 1 0 0 0 0 0 0 0 1 1 0 0
oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)				; oligos_6nt_mkv1_m2 versus oligos_7nt_mkv1_m1; m=6/7; ncol2=12; w=-3; offset=-3; strand=D; shift=0; score=0.536436; vrAGAGGGGArr- ; cor=; Ncor= a 4 5 11 0 11 0 1 2 0 10 3 7 0 c 3 1 0 0 0 0 1 0 0 0 2 2 0 g 4 6 1 12 1 12 10 10 12 2 6 3 0 t 1 0 0 0 0 0 0 0 0 0 1 0 0
oligos_6nt_mkv1_m4_shift0 (oligos_6nt_mkv1_m4)				; oligos_6nt_mkv1_m2 versus oligos_6nt_mkv1_m4; m=7/7; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.46351; arAGAGGGGwk-- ; cor=; Ncor= a 5 6 12 0 14 0 1 3 0 8 2 0 0 c 3 1 0 0 0 0 0 0 0 0 2 0 0 g 3 5 2 14 0 13 13 11 14 2 6 0 0 t 3 2 0 0 0 1 0 0 0 4 4 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m3_shift0 (oligos_7nt_mkv1_m3)				; oligos_7nt_mkv1_m3; m=0 (reference); ncol1=13; shift=0; ncol=13; vbCGACGGmGrky ; Alignment reference a 1 0 0 0 3 0 0 0 1 0 1 0 0 c 1 1 3 0 0 3 0 0 2 0 0 0 2 g 1 1 0 3 0 0 3 3 0 3 2 2 0 t 0 1 0 0 0 0 0 0 0 0 0 1 1
oligos_7nt_mkv1_m3_shift0 (oligos_7nt_mkv1_m3)				; oligos_7nt_mkv1_m3 versus oligos_7nt_mkv1_m3; m=1/3; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; vbCGACGGmGrky ; cor=; Ncor= a 1 0 0 0 3 0 0 0 1 0 1 0 0 c 1 1 3 0 0 3 0 0 2 0 0 0 2 g 1 1 0 3 0 0 3 3 0 3 2 2 0 t 0 1 0 0 0 0 0 0 0 0 0 1 1
oligos_6nt_mkv1_m5_shift0 (oligos_6nt_mkv1_m5)				; oligos_7nt_mkv1_m3 versus oligos_6nt_mkv1_m5; m=2/3; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.672895; shCGrCGGhb--- ; cor=; Ncor= a 1 2 0 0 4 0 1 0 2 0 0 0 0 c 2 2 7 0 0 7 0 0 2 2 0 0 0 g 4 1 0 7 2 0 5 7 1 3 0 0 0 t 0 2 0 0 1 0 1 0 2 2 0 0 0
oligos_7nt_mkv1_m4_shift4 (oligos_7nt_mkv1_m4)				; oligos_7nt_mkv1_m3 versus oligos_7nt_mkv1_m4; m=3/3; ncol2=13; w=0; offset=4; strand=D; shift=4; score=0.415402; ----rsGGcGGGC ; cor=; Ncor= a 0 0 0 0 2 1 1 0 1 0 1 0 0 c 0 0 0 0 1 2 0 0 4 0 0 0 5 g 0 0 0 0 3 3 5 6 1 6 5 6 1 t 0 0 0 0 0 0 0 0 0 0 0 0 0