; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD/results/oligos_7nt_mkv1/peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD/results/oligos_7nt_mkv1/peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD/results/oligos_7nt_mkv1/peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD/results/oligos_7nt_mkv1/peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	4	5	11	0	11	0	1	2	0	10	3	7
c	3	1	0	0	0	0	1	0	0	0	2	2
g	4	6	1	12	1	12	10	10	12	2	6	3
t	1	0	0	0	0	0	0	0	0	0	1	0
//
; Sites	12
>site_0
CAGGAGGGGAGC
>site_1
CAAGAGGGGGAG
>site_2
CAAGAGGAGACA
>site_3
GGAGAGGGGATA
>site_4
AAAGAGGGGACC
>site_5
GCAGAGGGGGGA
>site_6
AGAGGGGGGAGA
>site_7
GGAGAGCGGAAG
>site_8
AGAGAGAGGAGA
>site_9
AGAGAGGAGAGG
>site_10
GGAGAGGGGAAA
>site_11
TAAGAGGGGAGA
a	2	5	2	0	10	1	0	12	1	12	3	6	5
c	1	1	0	0	0	0	0	0	0	0	1	1	0
g	3	5	9	12	2	11	12	0	10	0	8	4	6
t	6	1	1	0	0	0	0	0	1	0	0	1	1
//
; Sites	12
>site_0
GAGGGGGAGAGAA
>site_1
CAAGAGGAGACAG
>site_2
TTGGAGGAGAGGG
>site_3
TCTGAGGAAAGAG
>site_4
TGGGAAGAGAGGG
>site_5
AGGGGGGAGAGCG
>site_6
AGAGAGGAGAGGG
>site_7
TAGGAGGATAAGA
>site_8
GGGGAGGAGAGAA
>site_9
TAGGAGGAGAAAA
>site_10
TAGGAGGAGAAAA
>site_11
GGGGAGGAGAGTT
a	1	0	0	0	3	0	0	0	1	0	1	0	0
c	1	1	3	0	0	3	0	0	2	0	0	0	2
g	1	1	0	3	0	0	3	3	0	3	2	2	0
t	0	1	0	0	0	0	0	0	0	0	0	1	1
//
; Sites	3
>site_0
CTCGACGGCGGGC
>site_1
GGCGACGGCGGTT
>site_2
ACCGACGGAGAGC
a	2	1	1	0	1	0	1	0	0	0	1	2	1
c	1	2	0	0	4	0	0	0	5	0	0	2	1
g	3	3	5	6	1	6	5	6	1	6	5	2	4
t	0	0	0	0	0	0	0	0	0	0	0	0	0
//
; Sites	6
>site_0
ACGGCGGGCGGAG
>site_1
GGGGAGAGCGGAA
>site_2
GAGGCGGGCGGGC
>site_3
CGGGCGGGCGACG
>site_4
GCGGGGGGCGGGG
>site_5
AGAGCGGGGGGCG
a	5	7	1	2	2	1	13	0	12	5	5
c	0	0	0	1	0	0	0	0	1	1	3
g	4	4	12	10	11	12	0	13	0	6	5
t	4	2	0	0	0	0	0	0	0	1	0
//
; Sites	13
>site_0
AGGGGGAGAGA
>site_1
AAGGGGAGAAG
>site_2
AAGAGGAGACA
>site_3
TGGGGGAGCTC
>site_4
TGAGGGAGAAG
>site_5
TTGGGAAGAGA
>site_6
GGGGGGAGAGC
>site_7
GAGAGGAGAGG
>site_8
AAGCGGAGAAA
>site_9
TTGGGGAGAGG
>site_10
GAGGGGAGAAA
>site_11
GAGGAGAGAAG
>site_12
AAGGAGAGAGC
; Host name	rsat
; Job started	2025-04-26.155746
; Job done	2025-04-26.155746
; Seconds	0.12
;	user	0.12
;	system	0.02
;	cuser	0
;	csystem	0
