RSAT - peak-motifs result

Analysis: R1-plus (26/04/2025 15:58)

peak-motifs  -v 1 -title R1-plus -i $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD/peak-motifspeak_seq -max_seq_len 100 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -1str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD

motif discovery
oligos_6nt_mkv1	oligos_6nt_mkv1_m1 assembly: gaggag (sig=2.03; e-value=0.0093) RC: ctcctc oligos_6nt_mkv1_m2 assembly: ggagag (sig=2.03; e-value=0.0093) RC: ctctcc oligos_6nt_mkv1_m3 assembly: ggggag (sig=1.81; e-value=0.015) RC: ctcccc oligos_6nt_mkv1_m4 assembly: agagggg (sig=1.81; e-value=0.015) RC: cccctct oligos_6nt_mkv1_m5 assembly: cgacgg (sig=1.50; e-value=0.032) RC: ccgtcg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv1	oligos_7nt_mkv1_m1 assembly: agagggga (sig=2.83; e-value=0.0015) RC: tcccctct oligos_7nt_mkv1_m2 assembly: ggaggagag (sig=2.61; e-value=0.0025) RC: ctctcctcc oligos_7nt_mkv1_m3 assembly: cgacggcgg (sig=1.46; e-value=0.035) RC: ccgccgtcg oligos_7nt_mkv1_m4 assembly: ggcgggcgg (sig=0.65; e-value=0.22) RC: ccgcccgcc oligos_7nt_mkv1_m5 assembly: ggggaga (sig=0.63; e-value=0.23) RC: tctcccc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv1_m1	k-mer sig=2.03; evalue=0.0093 rGGaGGaGas STCTCCTCCY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 7 (13.46%) Max nb of predicted sites per peak: 1  (max_circle:8094-8195()) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv1_m2	k-mer sig=2.03; evalue=0.0093 GvGGaGaGss SSCTCTCCBC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 7 (13.46%) Max nb of predicted sites per peak: 2  (max_circle:5122-5223()) Mean nb of predicted sites per peak: 1.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv1_m3	k-mer sig=1.81; evalue=0.015 rsGGGGaGVv BBCTCCCCSY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (9.62%) Max nb of predicted sites per peak: 2  (max_circle:5122-5223()) Mean nb of predicted sites per peak: 1.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv1_m4	k-mer sig=1.81; evalue=0.015 SraGaGGGGas STCCCCTCTYS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 7 (13.46%) Max nb of predicted sites per peak: 3  (max_circle:5122-5223()) Mean nb of predicted sites per peak: 1.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv1_m5	k-mer sig=1.50; evalue=0.032 SCCGrCGGCS SGCCGYCGGS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (7.69%) Max nb of predicted sites per peak: 2  (max_circle:6562-6663()) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv1_m1	k-mer sig=2.83; evalue=0.0015 SvaGaGSGGasv BSTCCSCTCTBS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (11.54%) Max nb of predicted sites per peak: 6  (max_circle:5122-5223()) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv1_m2	k-mer sig=2.61; evalue=0.0025 bvGGaGGaGaSvr YBSTCTCCTCCBV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 10 (19.23%) Max nb of predicted sites per peak: 2  (max_circle:5122-5223()) Mean nb of predicted sites per peak: 1.10	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv1_m3	k-mer sig=1.46; evalue=0.035 SSCGaCGGCGGGC GCCCGCCGTCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (5.77%) Max nb of predicted sites per peak: 1  (max_circle:6562-6663()) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv1_m4	k-mer sig=0.65; evalue=0.22 sSGGCGGGCGGSS SSCCGCCCGCCSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (5.77%) Max nb of predicted sites per peak: 3  (max_circle:6562-6663()) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv1_m5	k-mer sig=0.63; evalue=0.23 rrGSGGaGmvV BBKCTCCSCYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (11.54%) Max nb of predicted sites per peak: 2  (max_circle:6682-6783()) Mean nb of predicted sites per peak: 1.67	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title R1-plus -i $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD/peak-motifspeak_seq -max_seq_len 100 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -1str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD

TimeWarn: 2025-04-26.155741 Reading pattern file -origin

TimeWarn: 2025-04-26.155741 Reading pattern file -origin

TimeWarn: 2025-04-26.155748 Reading pattern file -origin

Warning: Not a single pattern was found in file tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD/results/positions_6nt/peak-motifs_positions-1str-noov_6nt_ci50.tab

TimeWarn: 2025-04-26.155749 Reading pattern file -origin

Warning: Not a single pattern was found in file tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155738_2025-04-26.155738_OSbARD/results/positions_7nt/peak-motifs_positions-1str-noov_7nt_ci50.tab