/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB/data/sequences/peak-motifs_test_maxlen100_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title R1-minus -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB/data/sequences/peak-motifs_test_maxlen100_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	20
	Sum of sequence lengths      	2000
	Min sequence length          	0
	Max sequence length          	100
	Average sequence length      	100
	Possible positions           	1980
 Sequences:
	#	length	ID
	1	100	max_circle:3470-3571()
	2	100	max_circle:3522-3623()
	3	100	max_circle:3676-3777()
	4	100	max_circle:3749-3850()
	5	100	max_circle:3837-3938()
	6	100	max_circle:3997-4098()
	7	100	max_circle:6700-6801()
	8	100	max_circle:6954-7055()
	9	100	max_circle:7914-8015()
	10	100	max_circle:8042-8143()
	11	100	max_circle:8998-9099()
	12	100	max_circle:10787-10888()
	13	100	max_circle:11003-11104()
	14	100	max_circle:12344-12445()
	15	100	max_circle:12469-12570()
	16	100	max_circle:12673-12774()
	17	100	max_circle:14064-14165()
	18	100	max_circle:14095-14196()
	19	100	max_circle:14242-14343()
	20	100	max_circle:14273-14374()
 Oligonucleotide statistics:
	Total occurrences    	1794
 Position interval parameters:
	Position interval    	20
	Number of windows    	6
	Total positions      	1980
	Degrees of freedom   	5
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-3	[-59,-40]	-49.5	20	200
	2	-2	[-39,-20]	-29.5	20	400
	3	-1	[-19,0]	-9.5	20	400
	4	0	[1,20]	10.5	20	400
	5	1	[21,40]	30.5	20	400
	6	2	[41,60]	50.5	20	180

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-49.5          	occurrences in window	1	[-59,-40]
	11	-29.5          	occurrences in window	2	[-39,-20]
	12	-9.5           	occurrences in window	3	[-19,0]
	13	10.5           	occurrences in window	4	[1,20]
	14	30.5           	occurrences in window	5	[21,40]
	15	50.5           	occurrences in window	6	[41,60]
seq id occ chi2 df Pval Eval sig rank -49.5 -29.5 -9.5 10.5 30.5 50.5
tt tt 157 26.4 5 7.5e-05 0.0012 2.92 1 11 57 24 29 27 9
cc cc 116 25.2 5 1.3e-04 0.0021 2.68 2 13 9 12 34 33 15
ga ga 91 13.4 5 2.0e-02 0.31 0.50 3 13 9 16 14 27 12
ag ag 109 11.2 5 4.7e-02 0.76 0.12 4 16 11 18 23 29 12
ac ac 97 10.7 5 5.8e-02 0.92 0.04 5 8 11 24 15 25 14
gc gc 32 10.7 5 5.9e-02 0.94 0.03 6 5 3 3 5 13 3
ca ca 117 9.6 5 8.8e-02 1.4 -0.15 7 8 15 27 21 30 16
aa aa 334 6.7 5 2.5e-01 4 -0.60 8 29 57 82 71 61 34
ta ta 195 5.7 5 3.4e-01 5.4 -0.74 9 17 52 38 39 33 16
tc tc 89 4.8 5 4.5e-01 7.1 -0.85 10 5 19 14 21 23 7
at at 201 3.3 5 6.5e-01 10 -1.02 11 17 50 40 41 36 17
ct ct 79 2.3 5 8.1e-01 13 -1.11 12 8 15 12 17 17 10
tg tg 52 2.0 5 8.5e-01 14 -1.13 13 3 9 13 10 12 5
gt gt 59 1.6 5 9.0e-01 14 -1.16 14 6 11 10 13 15 4
gg gg 44 0.6 5 9.9e-01 16 -1.20 15 7 8 9 7 10 3
cg cg 22 0.0 5 1.0e+00 16 -1.20 16 4 4 0 2 9 3 
 Host name	rsat
 Job started	2025-04-26.160000
 Job done	2025-04-26.160000
 Seconds	0.1
	user	0.1
	system	0.02
	cuser	0.01
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