; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB/results/oligos_6nt_mkv1/peak-motifs_oligos-1str-noov_6nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB/results/oligos_6nt_mkv1/peak-motifs_oligos-1str-noov_6nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB/results/oligos_6nt_mkv1/peak-motifs_oligos-1str-noov_6nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB/results/oligos_6nt_mkv1/peak-motifs_oligos-1str-noov_6nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	5	4	2	0	1	0	0	0	0	0	0	1	3	3
c	3	5	5	7	5	0	9	0	9	8	9	8	3	2
g	0	0	0	1	0	0	0	0	0	0	0	0	0	0
t	1	0	2	1	3	9	0	9	0	1	0	0	3	4
//
; Sites	9
>site_0
ACCCCTCTCCCCTT
>site_1
CCTCCTCTCCCCAA
>site_2
AACCCTCTCCCCAA
>site_3
CCCCCTCTCCCCCT
>site_4
CACTTTCTCCCCAA
>site_5
AAACTTCTCCCCCC
>site_6
AAACTTCTCCCCCC
>site_7
ACCCATCTCCCATT
>site_8
TCTGCTCTCTCCTT
a	1	0	0	0	0	0	1	0	2	3
c	3	3	0	7	0	0	5	0	2	0
g	0	3	0	0	7	0	0	0	1	0
t	3	1	7	0	0	7	1	7	2	4
//
; Sites	7
>site_0
TGTCGTCTCT
>site_1
TGTCGTCTCT
>site_2
CCTCGTCTAA
>site_3
CCTCGTCTAA
>site_4
TGTCGTCTGT
>site_5
ACTCGTTTTA
>site_6
CTTCGTATTT
a	6	4	2	0	0	0	0	0	0	1	3
c	0	2	7	0	10	10	0	10	4	5	5
g	1	0	0	0	0	0	0	0	4	0	1
t	3	4	1	10	0	0	10	0	2	4	1
//
; Sites	10
>site_0
ATCTCCTCCCA
>site_1
ATCTCCTCCCA
>site_2
AACTCCTCGAT
>site_3
TCCTCCTCCTC
>site_4
TCCTCCTCTCC
>site_5
AATTCCTCGTC
>site_6
GTCTCCTCTTG
>site_7
TTCTCCTCCTA
>site_8
AAATCCTCGCC
>site_9
AAATCCTCGCC
a	2	3	0	5	0	5	0	4	1	2
c	0	1	0	0	5	0	0	0	1	0
g	2	1	5	0	0	0	5	0	2	2
t	1	0	0	0	0	0	0	1	1	1
//
; Sites	5
>site_0
GAGACAGACG
>site_1
ACGACAGTGT
>site_2
TAGACAGAAA
>site_3
GGGACAGAGG
>site_4
AAGACAGATA
; Host name	rsat
; Job started	2025-04-26.160004
; Job done	2025-04-26.160004
; Seconds	0.1
;	user	0.1
;	system	0.01
;	cuser	0
;	csystem	0
