RSAT - peak-motifs result

Analysis: R1-minus (26/04/2025 16:00)

peak-motifs  -v 1 -title R1-minus -i $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB/peak-motifspeak_seq -max_seq_len 100 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -1str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB

motif discovery
oligos_6nt_mkv1	oligos_6nt_mkv1_m1 assembly: ccctctcccc (sig=3.79; e-value=0.00016) RC: ggggagaggg oligos_6nt_mkv1_m2 assembly: tcgtct (sig=1.30; e-value=0.05) RC: agacga oligos_6nt_mkv1_m3 assembly: ctcctcg (sig=1.20; e-value=0.063) RC: cgaggag oligos_6nt_mkv1_m4 assembly: gacaga (sig=0.94; e-value=0.11) RC: tctgtc oligos_6nt_mkv1_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv1	oligos_7nt_mkv1_m1 assembly: cccctctcccca (sig=4.74; e-value=1.8e-05) RC: tggggagagggg oligos_7nt_mkv1_m2 assembly: ctcctcc (sig=1.14; e-value=0.072) RC: ggaggag oligos_7nt_mkv1_m3 assembly: ttcctcgtcta (sig=1.08; e-value=0.083) RC: tagacgaggaa oligos_7nt_mkv1_m4 assembly: cacataa (sig=0.80; e-value=0.16) RC: ttatgtg oligos_7nt_mkv1_m5 assembly: tattaata (sig=0.77; e-value=0.17) RC: tattaata	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv1_m1	k-mer sig=3.79; evalue=0.00016 mMCCYTCTCCCCyy RRGGGGAGARGGKK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (30.00%) Max nb of predicted sites per peak: 3  (max_circle:3676-3777()) Mean nb of predicted sites per peak: 1.67	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv1_m2	k-mer sig=1.30; evalue=0.05 ySTCGTCTbw WVAGACGASR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (20.00%) Max nb of predicted sites per peak: 1  (max_circle:3749-3850()) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv1_m3	k-mer sig=1.20; evalue=0.063 wyCTCCTCSyc GRSGAGGAGRW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (15.00%) Max nb of predicted sites per peak: 3  (max_circle:3676-3777()) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv1_m4	k-mer sig=0.94; evalue=0.11 GvGaCaGaSG CSTCTGTCBC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (15.00%) Max nb of predicted sites per peak: 2  (max_circle:3997-4098()) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_7nt_mkv1_m1	k-mer sig=4.74; evalue=1.8e-05 vCCCCYTCTCCCCawS SWTGGGGAGARGGGGB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (20.00%) Max nb of predicted sites per peak: 3  (max_circle:3676-3777()) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv1_m2	k-mer sig=1.14; evalue=0.072 ahCTCCTCCyc GRGGAGGAGDT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (30.00%) Max nb of predicted sites per peak: 3  (max_circle:3676-3777()) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv1_m3	k-mer sig=1.08; evalue=0.083 aawTCCTCGYCTttt AAAAGRCGAGGAWTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (5.00%) Max nb of predicted sites per peak: 1  (max_circle:3676-3777()) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv1_m4	k-mer sig=0.80; evalue=0.16 wbCaCaTaaRm KYTTATGTGVW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (15.00%) Max nb of predicted sites per peak: 3  (max_circle:12344-12445()) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv1_m5	k-mer sig=0.77; evalue=0.17 kaTaTTaaTawa TWTATTAATATM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (10.00%) Max nb of predicted sites per peak: 2  (max_circle:3749-3850()) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title R1-minus -i $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB/peak-motifspeak_seq -max_seq_len 100 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -1str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB

Warning: Not a single pattern was found in file tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB/results/positions_6nt/peak-motifs_positions-1str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/26/peak-motifs.2025-04-26.155957_2025-04-26.155957_kQZNmB/results/positions_7nt/peak-motifs_positions-1str-noov_7nt_ci50.tab