RSAT - peak-motifs result

Analysis: R2-minus (26/04/2025 16:04)

peak-motifs  -v 1 -title R2-minus -i $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160359_2025-04-26.160359_Bog9iY/peak-motifspeak_seq -max_seq_len 100 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -1str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160359_2025-04-26.160359_Bog9iY

motif discovery
oligos_6nt_mkv1	oligos_6nt_mkv1_m1 assembly: ccctctcccc (sig=3.14; e-value=0.00072) RC: ggggagaggg oligos_6nt_mkv1_m2 assembly: tcgtcta (sig=2.06; e-value=0.0087) RC: tagacga oligos_6nt_mkv1_m3 assembly: cgcccc (sig=1.07; e-value=0.085) RC: ggggcg oligos_6nt_mkv1_m4 assembly: ccccgc (sig=1.07; e-value=0.085) RC: gcgggg oligos_6nt_mkv1_m5 assembly: gacaga (sig=0.89; e-value=0.13) RC: tctgtc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv1	oligos_7nt_mkv1_m1 assembly: cgccccctctcccca (sig=3.55; e-value=0.00028) RC: tggggagagggggcg oligos_7nt_mkv1_m2 assembly: ctctctc (sig=1.68; e-value=0.021) RC: gagagag oligos_7nt_mkv1_m3 assembly: cctcgtcta (sig=1.57; e-value=0.027) RC: tagacgagg oligos_7nt_mkv1_m4 assembly: gttcaca (sig=1.14; e-value=0.072) RC: tgtgaac oligos_7nt_mkv1_m5 assembly: cccccgc (sig=0.97; e-value=0.11) RC: gcggggg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv1_m1	k-mer sig=3.14; evalue=0.00072 mMCCYTCTCCCCcy RGGGGGAGARGGKK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 8 (27.59%) Max nb of predicted sites per peak: 3  (max_circle:3676-3777()) Mean nb of predicted sites per peak: 1.88	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv1_m2	k-mer sig=2.06; evalue=0.0087 ySTCGTCTrwa TWYAGACGASR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (13.79%) Max nb of predicted sites per peak: 1  (max_circle:3750-3851()) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv1_m3	k-mer sig=1.07; evalue=0.085 CyCGCCCCCy RGGGGGCGRG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (13.79%) Max nb of predicted sites per peak: 2  (max_circle:3601-3702()) Mean nb of predicted sites per peak: 1.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv1_m4	k-mer sig=1.07; evalue=0.085 msCCCCGCYS SRGCGGGGSK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (10.34%) Max nb of predicted sites per peak: 2  (max_circle:3601-3702()) Mean nb of predicted sites per peak: 1.67	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv1_m5	k-mer sig=0.89; evalue=0.13 KrGaCaGaGG CCTCTGTCYM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (10.34%) Max nb of predicted sites per peak: 2  (max_circle:3996-4097()) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv1_m1	k-mer sig=3.55; evalue=0.00028 CCCGCCCCCTCTCCCCawS SWTGGGGAGAGGGGGCGGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (13.79%) Max nb of predicted sites per peak: 3  (max_circle:3676-3777()) Mean nb of predicted sites per peak: 2.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv1_m2	k-mer sig=1.68; evalue=0.021 SbCTCTCTCyy RRGAGAGAGVS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (17.24%) Max nb of predicted sites per peak: 2  (max_circle:3484-3585()) Mean nb of predicted sites per peak: 1.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv1_m3	k-mer sig=1.57; evalue=0.027 kTYSTCGTCTrwa TWYAGACGASRAM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (17.24%) Max nb of predicted sites per peak: 1  (max_circle:3750-3851()) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv1_m4	k-mer sig=1.14; evalue=0.072 SyGTyCaCabc GVTGTGRACRS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (13.79%) Max nb of predicted sites per peak: 1  (max_circle:8992-9093()) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv1_m5	k-mer sig=0.97; evalue=0.11 ssCCCCCKCyC GRGMGGGGGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (17.24%) Max nb of predicted sites per peak: 5  (max_circle:3601-3702()) Mean nb of predicted sites per peak: 2.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title R2-minus -i $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160359_2025-04-26.160359_Bog9iY/peak-motifspeak_seq -max_seq_len 100 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -1str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160359_2025-04-26.160359_Bog9iY

Warning: Not a single pattern was found in file tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160359_2025-04-26.160359_Bog9iY/results/positions_6nt/peak-motifs_positions-1str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160359_2025-04-26.160359_Bog9iY/results/positions_7nt/peak-motifs_positions-1str-noov_7nt_ci50.tab