; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1/peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1/peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1/peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1/peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1/peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	1	7	7	3	11	0	11	0	1	2	0	6	2
c	1	0	0	3	0	0	0	0	1	0	0	0	1
g	8	4	3	5	0	11	0	11	9	9	10	1	4
t	1	0	1	0	0	0	0	0	0	0	1	4	4
//
; Sites	11
>site_0
TAAAAGAGGAGTT
>site_1
GAGGAGAGGGGAT
>site_2
GAACAGAGGGGTA
>site_3
GGAAAGAGGGGAC
>site_4
GAAGAGAGGGGTT
>site_5
CGAGAGAGAGGAG
>site_6
AGAGAGAGGAGAG
>site_7
GAGGAGAGGGGAA
>site_8
GATAAGAGGGGAG
>site_9
GGACAGAGGGTTT
>site_10
GAGCAGAGCGGGG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1//peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1//peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo_m1_rc.png
;
a	2	4	2	0	10	1	0	11	1	11	3	5	4
c	1	1	0	0	0	0	0	0	0	0	1	1	0
g	2	5	8	11	1	10	11	0	9	0	7	4	6
t	6	1	1	0	0	0	0	0	1	0	0	1	1
//
; Sites	11
>site_0
CAAGAGGAGACAG
>site_1
TTGGAGGAGAGGG
>site_2
TCTGAGGAAAGAG
>site_3
TGGGAAGAGAGGG
>site_4
AGGGGGGAGAGCG
>site_5
AGAGAGGAGAGGG
>site_6
TAGGAGGATAAGA
>site_7
GGGGAGGAGAGAA
>site_8
TAGGAGGAGAAAA
>site_9
TAGGAGGAGAAAA
>site_10
GGGGAGGAGAGTT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1//peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1//peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo_m2_rc.png
;
a	5	3	0	0	9	0	8	0	1	4	3
c	1	0	0	8	0	1	1	1	0	0	0
g	0	3	9	1	0	0	0	8	0	2	2
t	3	3	0	0	0	8	0	0	8	3	4
//
; Sites	9
>site_0
AGGCATAGTTA
>site_1
TAGCATAGTAA
>site_2
AAGCATAGAAA
>site_3
CAGCACAGTTG
>site_4
TTGCATCGTGG
>site_5
TTGCATACTTT
>site_6
AGGCATAGTAT
>site_7
AGGCATAGTAT
>site_8
ATGGATAGTGT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1//peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1//peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo_m3_rc.png
;
a	2	2	1	0	3	0	1	4	0	0	2	2
c	0	1	3	0	0	0	3	0	0	0	0	0
g	0	0	0	4	0	4	0	0	4	3	1	1
t	2	1	0	0	1	0	0	0	0	1	1	1
//
; Sites	4
>site_0
TTCGAGCAGGTT
>site_1
AACGTGCAGTAA
>site_2
TCCGAGAAGGGG
>site_3
AAAGAGCAGGAA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1//peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1//peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo_m4_rc.png
;
a	1	6	0	9	10	1	3	10	0	4	4
c	3	0	10	0	0	1	0	0	0	0	0
g	1	3	0	1	0	8	6	0	0	1	2
t	5	1	0	0	0	0	1	0	10	5	4
//
; Sites	10
>site_0
TACAAGTATAA
>site_1
TACAAGAATAA
>site_2
TACAAGAATAA
>site_3
TACAACGATTT
>site_4
CGCAAGGATTG
>site_5
CGCAAGGATTG
>site_6
AACAAGGATTT
>site_7
CACAAAGATAA
>site_8
GGCGAGGATTT
>site_9
TTCAAGAATGT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1//peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/oligos_7nt_mkv1//peak-motifs_oligos-1str-noov_7nt_mkv1_pssm_count_matrices_logo_m5_rc.png
;
; Host name	rsat
; Job started	2025-04-26.160508
; Job done	2025-04-26.160509
; Seconds	0.13
;	user	0.13
;	system	0.04
;	cuser	1.19
;	csystem	0.23
