RSAT - peak-motifs result

Analysis: R2-plus (26/04/2025 16:05)

peak-motifs  -v 1 -title R2-plus -i $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/peak-motifspeak_seq -max_seq_len 100 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -1str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt

motif discovery
oligos_6nt_mkv1	oligos_6nt_mkv1_m1 assembly: cagagggg (sig=1.65; e-value=0.022) RC: cccctctg oligos_6nt_mkv1_m2 assembly: ggagag (sig=1.35; e-value=0.045) RC: ctctcc oligos_6nt_mkv1_m3 assembly: ggaggag (sig=1.35; e-value=0.045) RC: ctcctcc oligos_6nt_mkv1_m4 assembly: ccccgc (sig=0.65; e-value=0.22) RC: gcgggg oligos_6nt_mkv1_m5 assembly: ttgtaa (sig=0.34; e-value=0.46) RC: ttacaa	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv1	oligos_7nt_mkv1_m1 assembly: acagagggg (sig=3.41; e-value=0.00039) RC: cccctctgt oligos_7nt_mkv1_m2 assembly: ggaggagag (sig=2.89; e-value=0.0013) RC: ctctcctcc oligos_7nt_mkv1_m3 assembly: gcatagt (sig=1.01; e-value=0.098) RC: actatgc oligos_7nt_mkv1_m4 assembly: cgagcagg (sig=0.56; e-value=0.28) RC: cctgctcg oligos_7nt_mkv1_m5 assembly: caaggat (sig=0.38; e-value=0.42) RC: atccttg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv1_m1	k-mer sig=1.65; evalue=0.022 rrSaGaGGGGws SWCCCCTCTSYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 8 (14.55%) Max nb of predicted sites per peak: 4  (max_circle:5130-5231()) Mean nb of predicted sites per peak: 1.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv1_m2	k-mer sig=1.35; evalue=0.045 GvGGaGaGSs SSCTCTCCBC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 7 (12.73%) Max nb of predicted sites per peak: 2  (max_circle:5130-5231()) Mean nb of predicted sites per peak: 1.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv1_m3	k-mer sig=1.35; evalue=0.045 brGGaGGaGas STCTCCTCCYV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 9 (16.36%) Max nb of predicted sites per peak: 1  (max_circle:8094-8195()) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv1_m4	k-mer sig=0.65; evalue=0.22 CYCCCCbCYC GRGVGGGGRG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (1.82%) Max nb of predicted sites per peak: 12  (max_circle:14226-14327()) Mean nb of predicted sites per peak: 12.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv1_m5	k-mer sig=0.34; evalue=0.46 wtTTGTaaat ATTTACAAAW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (27.27%) Max nb of predicted sites per peak: 2  (max_circle:20781-20882()) Mean nb of predicted sites per peak: 1.80	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv1_m1	k-mer sig=3.41; evalue=0.00039 SrrSaGaGSGGwb VWCCSCTCTSYYS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 7 (12.73%) Max nb of predicted sites per peak: 4  (max_circle:5130-5231()) Mean nb of predicted sites per peak: 1.43	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv1_m2	k-mer sig=2.89; evalue=0.0013 ysGGaGGaGaSvG CBSTCTCCTCCSR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 10 (18.18%) Max nb of predicted sites per peak: 2  (max_circle:5130-5231()) Mean nb of predicted sites per peak: 1.10	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv1_m3	k-mer sig=1.01; evalue=0.098 mgGCaymStrk MYASKRTGCCK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (9.09%) Max nb of predicted sites per peak: 2  (max_circle:4097-4198()) Mean nb of predicted sites per peak: 1.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv1_m4	k-mer sig=0.56; evalue=0.28 wMCGaGCaGGrr YYCCTGCTCGKW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (7.27%) Max nb of predicted sites per peak: 1  (max_circle:6674-6775()) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv1_m5	k-mer sig=0.38; evalue=0.42 YrCaaSGaTwd HWATCSTTGYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (9.09%) Max nb of predicted sites per peak: 1  (max_circle:7975-8076()) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title R2-plus -i $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/peak-motifspeak_seq -max_seq_len 100 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -1str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt

TimeWarn: 2025-04-26.160502 Reading pattern file -origin

TimeWarn: 2025-04-26.160503 Reading pattern file -origin

TimeWarn: 2025-04-26.160510 Reading pattern file -origin

Warning: Not a single pattern was found in file tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/positions_6nt/peak-motifs_positions-1str-noov_6nt_ci50.tab

TimeWarn: 2025-04-26.160510 Reading pattern file -origin

Warning: Not a single pattern was found in file tmp/www-data/2025/04/26/peak-motifs.2025-04-26.160500_2025-04-26.160500_72i0jt/results/positions_7nt/peak-motifs_positions-1str-noov_7nt_ci50.tab