; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 1 3 4 0 0 0 0 0 2 0 7 2 3
c 1 0 0 7 0 0 0 0 5 0 0 1 0
g 2 3 0 0 7 0 7 7 0 6 0 1 4
t 3 1 3 0 0 7 0 0 0 1 0 3 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m1_rc.png
;
a 5 1 0 0 1 0 9 0 0 0 3 0
c 2 6 9 8 1 8 0 9 9 8 1 6
g 0 2 0 0 7 0 0 0 0 0 5 0
t 2 0 0 1 0 1 0 0 0 1 0 3
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m2_rc.png
;
a 17 18 36 3 34 35 35 2 9 32 22 12
c 5 5 0 0 2 0 0 2 26 1 6 5
g 10 3 0 31 0 0 0 30 0 2 4 14
t 4 10 0 2 0 1 1 2 1 1 4 5
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m3_rc.png
;
a 1 0 0 0 0 0 0 5 0 0 0 3
c 0 3 0 5 2 0 5 0 5 5 2 1
g 3 0 5 0 3 5 0 0 0 0 1 1
t 1 2 0 0 0 0 0 0 0 0 2 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m4_rc.png
;
a 6 3 0 0 15 15 0 0 7 4
c 5 6 15 15 0 0 0 15 4 5
g 2 2 0 0 0 0 0 0 0 1
t 2 4 0 0 0 0 15 0 4 5
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m5_rc.png
;
a 4 10 19 19 19 0 1 18 2 2 5 3
c 4 1 0 0 0 16 2 1 0 0 1 5
g 4 4 0 0 0 1 15 0 0 16 8 2
t 7 4 0 0 0 2 1 0 17 1 5 9
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m6_rc.png
;
a 2 3 0 6 0 6 0 0 1 6 2 3
c 3 1 6 0 0 0 0 6 0 0 1 0
g 1 0 0 0 6 0 5 0 0 0 2 2
t 0 2 0 0 0 0 1 0 5 0 1 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m7_rc.png
;
a 7 10 1 22 0 2 20 19 0 2 8 5
c 6 3 19 0 0 0 2 0 0 0 4 2
g 3 2 1 0 0 16 0 0 0 19 3 8
t 6 7 1 0 22 4 0 3 22 1 7 7
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m8_rc.png
;
a 37 52 112 108 4 3 94 5 12 52 47
c 13 17 0 1 4 6 1 0 1 11 13
g 31 21 2 3 1 4 7 2 88 23 22
t 39 30 6 8 111 107 18 113 19 34 38
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m9_rc.png
;
a 4 3 0 2 1 2 1 1 0 4 2
c 3 5 14 0 13 0 0 14 2 4 7
g 5 3 1 13 1 13 0 0 12 5 2
t 3 4 0 0 0 0 14 0 1 2 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m10_rc.png
;
a 17 32 3 53 3 53 2 59 5 58 21 32
c 5 4 1 2 0 2 2 2 1 0 5 0
g 35 17 57 3 60 4 57 1 56 3 29 14
t 6 10 2 5 0 4 2 1 1 2 8 17
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m11_rc.png
;
a 1 3 1 0 5 0 0 0 6 0 2 3
c 2 1 4 0 1 0 6 0 0 0 1 1
g 2 1 0 6 0 6 0 6 0 6 1 2
t 1 1 1 0 0 0 0 0 0 0 2 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m12_rc.png
;
a 4 5 14 0 0 0 14 0 8 4
c 3 0 0 0 0 0 0 0 1 3
g 4 6 0 14 14 14 0 14 2 5
t 3 3 0 0 0 0 0 0 3 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m13_rc.png
;
a 11 9 26 3 1 0 0 24 24 4 10 14
c 1 1 0 1 0 0 0 1 0 3 1 1
g 6 5 1 21 0 0 0 1 1 20 7 5
t 9 12 0 2 26 27 27 1 2 0 9 7
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m14_rc.png
;
a 5 5 0 15 14 0 2 0 15 1 6 3
c 5 1 13 0 0 0 0 2 0 1 0 5
g 1 5 1 0 1 14 13 13 0 11 4 5
t 4 4 1 0 0 1 0 0 0 2 5 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m15_rc.png
;
a 4 6 10 0 0 1 9 0 0 9 3 6
c 2 1 0 9 10 2 1 10 10 1 2 2
g 3 1 0 1 0 6 0 0 0 0 2 0
t 1 2 0 0 0 1 0 0 0 0 3 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m16_rc.png
;
a 8 8 23 4 1 31 3 0 0 3 10 9
c 9 6 1 0 0 0 0 0 2 0 3 3
g 6 5 5 4 31 1 0 0 28 27 7 7
t 10 14 4 25 1 1 30 33 3 3 13 14
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m17_rc.png
;
a 5 4 17 19 2 1 0 18 0 3 9 9
c 2 4 0 0 0 0 3 1 0 0 4 2
g 9 4 0 0 16 0 16 0 0 16 5 1
t 3 7 2 0 1 18 0 0 19 0 1 7
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m18_rc.png
;
a 3 5 0 0 13 0 0 13 3 4
c 5 1 13 0 0 13 0 0 1 2
g 2 1 0 0 0 0 0 0 3 3
t 3 6 0 13 0 0 13 0 6 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.085040_PFMW3f_pssm_count_matrices_logo_m19_rc.png
;
; Host name rsat
; Job started 2025-04-28.085047
; Job done 2025-04-28.085052
; Seconds 0.23
; user 0.23
; system 0.13
; cuser 4.41
; csystem 0.78