; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 763 785 1208 1540 1483 369 1474 1474 271 564 444 1235 425 1229 1423 258 239 1368 227 220 361 586 641
c 254 276 168 80 96 89 99 83 68 165 148 123 127 140 85 94 107 92 67 58 138 250 223
g 231 234 135 69 69 83 99 80 78 602 157 128 113 134 69 82 100 100 84 93 153 286 279
t 631 584 368 190 231 1338 207 242 1462 548 1130 393 1214 376 302 1445 1433 319 1501 1508 1227 757 736
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m1_rc.png
;
a 525 546 74 78 110 1372 95 99 1481 614 629
c 245 185 35 49 50 64 1370 1406 47 292 258
g 263 317 53 1355 1380 64 33 39 45 193 244
t 584 569 1455 135 77 117 119 73 44 518 486
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m2_rc.png
;
a 172 130 137 15 513 13 16 3 8 106 157 169
c 90 109 226 489 0 487 2 2 6 49 122 87
g 87 122 49 6 2 2 487 0 489 226 109 90
t 169 157 106 8 3 16 13 513 15 137 130 172
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m3_rc.png
;
a 835 897 155 186 2362 225 2328 91 177 785 880
c 438 365 96 2078 50 2070 26 51 101 450 404
g 380 415 77 106 36 63 106 21 2045 365 408
t 896 872 2221 179 101 191 89 2386 226 949 857
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m4_rc.png
;
a 1693 1756 638 4264 538 4388 4370 4377 432 1671 1759
c 636 646 246 112 3641 125 101 72 96 745 667
g 776 677 3385 102 225 56 71 92 127 819 695
t 1598 1624 434 225 299 134 161 162 4048 1468 1582
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m5_rc.png
;
a 217 260 73 495 83 484 123 85 504 96 485 473 66 143 60 495 72 495 184 243
c 79 85 20 24 27 25 58 26 18 36 29 29 14 36 23 24 24 23 105 64
g 75 86 22 23 26 26 320 30 22 30 29 42 22 323 32 30 24 38 81 99
t 248 188 504 77 483 84 118 478 75 457 76 75 517 117 504 70 499 63 249 213
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m6_rc.png
;
a 241 281 516 535 88 521 138 94 520 88 482 494 79 143 75 514 68 499 217 248
c 90 83 20 27 22 20 53 27 24 35 39 27 30 37 22 15 33 22 85 65
g 79 70 22 11 35 28 318 23 21 30 27 31 17 320 27 31 34 36 72 96
t 224 200 76 61 489 65 125 490 69 481 86 82 508 134 510 74 499 77 260 225
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m7_rc.png
;
a 2242 2334 545 5541 5772 348 799 5829 364 2116 2165
c 1018 1027 209 244 123 158 4445 88 173 918 831
g 812 843 190 210 120 119 331 93 104 1053 874
t 2265 2133 5393 342 322 5712 762 327 5696 2250 2467
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m8_rc.png
;
a 47 54 18 106 18 105 26 108 14 20 93 10 92 33 43 20 101 23 101 99 13 44 11 98 12 93 46 39
c 24 17 9 5 11 6 47 1 7 5 6 10 5 44 8 11 7 6 2 8 6 11 6 1 5 8 11 18
g 18 11 8 5 1 6 11 6 8 2 6 7 11 8 44 5 10 6 5 7 1 47 6 11 5 9 17 24
t 39 46 93 12 98 11 44 13 99 101 23 101 20 43 33 92 10 93 20 14 108 26 105 18 106 18 54 47
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m9_rc.png
;
a 2720 3002 5152 6247 6200 600 6069 6110 746 5020 2606 2647
c 996 1004 395 99 129 187 180 130 148 313 868 823
g 932 777 339 78 78 146 134 141 136 419 912 909
t 2037 1902 799 261 278 5752 302 304 5655 933 2299 2306
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m10_rc.png
;
a 333 322 283 607 716 719 729 105 190 147 755 125 719 750 80 139 163 208 474 330 334
c 113 128 87 66 36 31 29 30 60 34 31 24 43 15 17 42 52 80 82 119 102
g 114 121 341 64 44 36 37 42 483 50 43 30 55 25 41 525 62 367 94 111 139
t 327 316 176 150 91 101 92 710 154 656 58 708 70 97 749 181 610 232 237 327 312
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m11_rc.png
;
a 344 350 142 35 915 85 42 910 44 907 284 394
c 116 128 49 17 16 766 27 16 26 17 167 126
g 127 129 695 25 15 59 8 29 10 15 107 137
t 390 370 91 900 31 67 900 22 897 38 419 320
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m12_rc.png
;
a 3822 4135 8295 8335 1159 1343 8434 8432 8473 3835 3610
c 1381 1325 235 191 212 636 184 212 147 1234 1402
g 1295 1272 234 235 291 6178 199 210 163 1282 1333
t 2682 2448 416 419 7518 1023 363 326 397 2829 2835
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m13_rc.png
;
a 940 1009 2160 2160 2160 0 2160 2160 1160 1068
c 319 276 0 0 0 0 0 0 205 283
g 332 406 0 0 0 2160 0 0 369 317
t 569 469 0 0 0 0 0 0 426 492
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m14_rc.png
;
a 574 563 109 1554 86 1514 40 166 217 613 564
c 284 262 1362 20 26 24 16 1242 84 238 261
g 258 225 46 22 21 37 18 82 1149 223 218
t 524 590 123 44 1507 65 1566 150 190 566 597
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m15_rc.png
;
a 378 377 376 143 832 175 945 90 72 900 80 844 193 869 163 743 378 408
c 163 155 106 66 47 672 30 30 35 28 40 54 552 36 84 66 152 126
g 152 131 323 49 62 53 24 20 46 37 31 52 70 47 39 85 122 152
t 376 406 264 811 128 169 70 929 916 104 918 119 254 117 783 175 417 383
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m16_rc.png
;
a 2555 2593 1180 5934 961 6042 6146 6130 6006 2828 2720
c 926 881 418 189 4764 202 123 107 96 955 1049
g 1038 1010 4314 115 360 98 76 107 127 968 922
t 1965 2000 572 246 399 142 139 140 255 1733 1793
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m17_rc.png
;
a 353 346 946 0 0 946 0 946 387 352
c 154 186 0 0 0 0 946 0 140 155
g 99 141 0 0 0 0 0 0 99 159
t 340 273 0 946 946 0 0 0 320 280
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m18_rc.png
;
a 169 160 414 0 0 414 414 0 128 140
c 74 66 0 414 0 0 0 0 82 71
g 56 56 0 0 414 0 0 0 64 56
t 115 132 0 0 0 0 0 414 140 147
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m19_rc.png
;
a 154 153 0 448 0 448 0 448 168 185
c 67 59 0 0 0 0 448 0 70 57
g 67 92 0 0 448 0 0 0 60 77
t 160 144 448 0 0 0 0 0 150 129
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m20.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.210703_oMdNN9_pssm_count_matrices_logo_m20_rc.png
;
; Host name rsat
; Job started 2025-04-28.210719
; Job done 2025-04-28.210728
; Seconds 1.07
; user 1.07
; system 0.3
; cuser 6.41
; csystem 0.89