; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/04/28/oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 513 545 1254 1315 147 1325 104 146 64 672 280 473 424
c 256 269 58 40 1146 14 1143 39 22 142 134 240 273
g 209 225 50 18 37 29 33 1129 16 258 109 233 216
t 435 374 51 40 83 45 133 99 1311 341 890 467 500
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m1_rc.png
;
a 866 926 1711 1809 1765 2086 301 137 200 2140 2121 1719 868 806
c 368 407 192 159 117 18 127 65 1833 65 47 188 322 382
g 311 351 152 136 133 59 1615 59 104 19 38 139 404 373
t 737 598 227 178 267 119 239 2021 145 58 76 236 688 721
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m2_rc.png
;
a 478 441 375 66 80 119 57 83 1234 1257 1157 517 488
c 180 174 145 36 32 29 22 1141 58 30 54 201 198
g 212 197 187 54 1111 1111 18 51 17 26 53 224 200
t 474 532 637 1188 121 85 1247 69 35 31 80 402 458
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m3_rc.png
;
a 79 70 142 26 190 2 8 6 7 201 10 79 84
c 30 46 21 31 12 203 1 0 6 3 203 33 35
g 50 35 24 13 7 5 197 0 198 7 2 47 23
t 60 68 32 149 10 9 13 213 8 8 4 60 77
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m4_rc.png
;
a 138 155 331 360 24 49 23 15 3 17 99 113
c 55 67 12 6 331 10 290 2 3 12 51 66
g 66 51 12 3 2 290 10 331 6 12 67 55
t 113 99 17 3 15 23 49 24 360 331 155 138
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m5_rc.png
;
a 392 426 859 904 157 945 110 127 61 75 70 68 259 313
c 177 201 64 42 763 22 778 31 18 51 30 55 160 164
g 164 160 55 30 51 18 31 778 22 763 42 64 201 177
t 313 259 68 70 75 61 127 110 945 157 904 859 426 392
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m6_rc.png
;
a 422 422 530 1019 1016 1029 151 82 142 1028 1028 239 174 402 410
c 175 217 231 49 28 20 63 39 866 36 33 721 71 189 204
g 172 176 152 32 42 27 821 29 50 25 29 63 731 182 159
t 373 327 229 42 56 66 107 992 84 53 52 119 166 369 369
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m7_rc.png
;
a 550 445 139 102 87 77 194 1587 1512 658 577
c 225 225 41 54 95 1452 1380 44 65 289 263
g 256 275 1362 1421 44 38 32 12 21 263 256
t 644 730 133 98 1449 108 69 32 77 465 579
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m8_rc.png
;
a 176 137 366 22 393 19 27 6 26 23 139 130
c 51 61 13 42 2 347 5 4 8 12 78 72
g 68 86 11 9 2 5 356 1 358 329 69 70
t 114 125 19 336 12 38 21 398 17 45 123 137
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m9_rc.png
;
a 352 349 249 935 66 948 54 109 37 834 140 342 311
c 180 173 386 24 845 9 823 22 27 31 96 177 179
g 162 153 136 14 20 17 12 806 19 69 53 176 153
t 307 326 230 28 70 27 112 64 918 67 712 306 358
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m10_rc.png
;
a 1183 1231 119 259 304 3304 322 3255 3306 1367 1374
c 484 337 73 97 152 74 138 115 65 520 488
g 587 608 62 2900 2894 78 132 109 59 610 610
t 1392 1470 3392 390 296 190 3054 167 216 1149 1174
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m11_rc.png
;
a 432 345 712 82 1068 72 137 32 81 40 615 381 378
c 167 208 85 72 15 927 12 17 22 24 136 191 206
g 195 197 119 33 28 28 933 8 981 33 155 194 199
t 361 405 239 968 44 128 73 1098 71 1058 249 389 372
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m12_rc.png
;
a 1327 1389 3168 3162 262 3076 347 166 326 1253 1199
c 533 520 65 78 62 60 88 36 155 332 501
g 488 548 92 55 104 114 2627 45 2666 623 534
t 1116 1007 139 169 3036 214 402 3217 317 1256 1230
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m13_rc.png
;
a 2704 2826 1261 6354 1023 6515 6664 6631 6523 3000 2972
c 1007 988 411 219 5205 230 122 131 114 1075 1037
g 1060 1087 4732 130 418 106 93 115 140 999 952
t 2262 2132 629 330 387 182 154 156 256 1959 2072
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m14_rc.png
;
a 944 1001 1817 1870 687 556 2263 362 184 273 2476 2487 2422 1016 978
c 418 412 210 180 247 195 54 123 97 2060 82 58 90 384 392
g 371 405 232 155 194 259 142 1860 84 119 53 53 60 416 410
t 957 872 431 485 1562 1680 231 345 2325 238 79 92 118 874 910
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m15_rc.png
;
a 867 860 1004 107 78 183 2387 260 115 209 153 491 782 857
c 420 468 287 44 28 102 55 1871 60 104 109 316 383 407
g 467 384 375 44 64 2117 64 155 30 80 153 413 453 406
t 896 938 984 2455 2480 248 144 364 2445 2257 2235 1430 1032 980
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m16_rc.png
;
a 1127 1176 2587 2587 0 2587 2587 2587 1341 1138
c 366 344 0 0 0 0 0 0 329 350
g 437 472 0 0 2587 0 0 0 364 370
t 657 595 0 0 0 0 0 0 553 729
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m17_rc.png
;
a 242 262 469 748 37 737 40 35 14 103 249 257
c 160 168 96 12 715 14 684 14 5 392 121 173
g 137 128 101 4 7 12 9 702 16 157 125 104
t 236 217 109 11 16 12 42 24 740 123 280 241
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m18_rc.png
;
a 633 672 1732 1706 77 52 72 128 100 179 634 696
c 349 329 43 40 46 14 25 78 30 1383 279 284
g 242 262 52 31 33 32 52 1540 48 99 264 257
t 672 633 69 119 1740 1798 1747 150 1718 235 719 659
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m19_rc.png
;
a 354 433 746 1035 77 96 23 31 22 109 307 330
c 186 193 157 10 908 24 20 15 4 101 186 181
g 192 156 68 10 18 884 10 939 14 96 196 203
t 342 292 103 19 71 70 1021 89 1034 768 385 360
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m20.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28//oligo-analysis_2025-04-28.211124_zC3wIe_pssm_count_matrices_logo_m20_rc.png
;
; Host name rsat
; Job started 2025-04-28.211137
; Job done 2025-04-28.211144
; Seconds 0.93
; user 0.93
; system 0.24
; cuser 6.15
; csystem 0.74