; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	10	9	1	8	32	10	34	4	6	40	1	0	1	44	2	37	1	7	33	4	4	5	22	15
c	10	9	36	4	9	5	3	34	5	3	4	48	1	1	5	2	11	6	2	5	34	8	10	15
g	15	10	8	34	5	2	6	11	2	5	1	1	48	4	3	5	34	3	5	9	4	36	9	10
t	15	22	5	4	4	33	7	1	37	2	44	1	0	1	40	6	4	34	10	32	8	1	9	10
//
; Sites	50
>site_0
GATAAATACATCGATAGTATCGGC
>site_1
GCCGATACTATCGATGTATTTATC
>site_2
GACAACATCCTCGATAGTATAGTG
>site_3
CACTATACTATCGAGGATGTTGTC
>site_4
CTCGATAGAGCCGATAGTATCGAG
>site_5
CTCGATACTATCGGCTCTATCGAG
>site_6
ATCTAAGATACCGATAGCATCGCG
>site_7
CGCGATGCTATCGGTATCTTAGAT
>site_8
TACGATACTATCGATAGCCGTCAG
>site_9
CTGACGGCTATCGATAGTATCGTA
>site_10
AACAAAGCAATCGATACTATTGGA
>site_11
TCCAATAGTATCGATTGCTTTGTT
>site_12
TCCGCTCCTATCCGATGTATCGGA
>site_13
TCCGATACATCGGATAGGAGCGGA
>site_14
GATGCTACTATCGATAGTATCGAA
>site_15
TTCGATACTATCGATAGTAGCATC
>site_16
TTGTGAACGGTCGATAGTATCGAC
>site_17
GTCGATACTATCGACCGTTCACAA
>site_18
GTCGATAGTATCGACAGAGCGGCA
>site_19
TGCCGCTCTGTCGATACTATCGAC
>site_20
AGTCGCTCTATCGATACTATCGCA
>site_21
TGCGATAGTATCGATAGAGCGACT
>site_22
CGATGTGCGTTCGATAGTATCGAT
>site_23
ATCGATACTATCGAACGCACATCG
>site_24
GTTAAATGTATCGATACTATCGCG
>site_25
CGCGATAGTATCGATACATTTAAC
>site_26
ATCGATACTATCGCGAGTGGCCAA
>site_27
TTGGCCACTCGCGATAGTATCGAT
>site_28
CACGATAGTATCGATACGTACGAG
>site_29
CTCGTACGTATCGATACTATCGTG
>site_30
GTGAATACAATCGATGGTTGCGGG
>site_31
CCCGCAACCATCGATTGTATTCAC
>site_32
TCTGTATACATCGATAGTATCGAC
>site_33
GTCGATACTATCGATGTATACAGA
>site_34
GTCGATACTATCGGCACTATCGGC
>site_35
GCCGATAGTGCCGATAGTATCGAC
>site_36
GCCGATACTATCGATACAAGCCCA
>site_37
TGGGCTTGTATCGATAGTATCGGC
>site_38
TCCGATAACATTGAGTGTATCGCA
>site_39
TGCGATACACTCAATGTTATCGGA
>site_40
GACACTACTATCGTTACTATCGAT
>site_41
ATCGATAGTAACGATAGTAGTGTC
>site_42
ATCGTTACTATCGATAGCTGGCAT
>site_43
ATGCCAGCTATCGATAGTAACGAT
>site_44
GGCGATACTATCGATTGGCGGCAC
>site_45
GTGCCGCCAATCGATAGTATCGCC
>site_46
TACGTATCTATCGATAGTATCGCA
>site_47
TGCGATACTATCGATAGATACGTA
>site_48
ATCGATACTATCGACAGTGCCCAT
>site_49
ATGGGCACTGTCGATAGTATCGAT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m1_rc.png
;
a	22	19	19	14	32	6	0	2	62	0	61	1	1	59	2	2	3	35	14	22
c	18	10	24	22	10	11	63	0	0	1	0	25	3	2	3	59	1	13	16	9
g	6	18	10	9	12	7	0	60	1	3	1	35	0	1	1	0	59	10	12	18
t	18	17	11	19	10	40	1	2	1	60	2	3	60	2	58	3	1	6	22	15
//
; Sites	64
>site_0
AGCGGTCGATACTATCGATG
>site_1
CGTCATCGATAGTATCGACC
>site_2
ATACATCGATAGTATCGGCT
>site_3
ACAAGCCGATACTATCGATG
>site_4
AGCGACCGATACTATCGTGG
>site_5
CTGCCACGATAGTATCGGTC
>site_6
ACACACCGATAGTATCGCAA
>site_7
CCATATCGATAGAAACACTA
>site_8
AAACGCCGATAGTATCGAAT
>site_9
ATCATTCGATACTATCGGCG
>site_10
TAACCACTATACTATCGAGG
>site_11
CATCCTCGATAGTATAGTGG
>site_12
CATCCTCGATAGTATAGTGG
>site_13
TAACCACTATACTATCGAGG
>site_14
TATATTCGATAATCTCGAAC
>site_15
AGTGTTCGAGATTATCGAAT
>site_16
TAGAGCCGATAGTATCGAGT
>site_17
TGCACTCGATACTATCGGCT
>site_18
AGATACCGATAGCATCGCGC
>site_19
CGCATACGATACTATCGATA
>site_20
GGCTATCGATAGTATCGTAT
>site_21
GCACTGCGATAGTATCGCTG
>site_22
TGTCAGCGATACTATCGCAG
>site_23
AGCAATCGATACTATTGGAA
>site_24
CTATTCCAATAGTATCGATT
>site_25
TACTATCGATAGTAGCATCG
>site_26
TACTATCGATAGTATCGAAC
>site_27
ACGGTTCGATACTATCGATA
>site_28
CTAGCTCGATAGCACCTATA
>site_29
AACGGTCGATAGTATCGACA
>site_30
CTCTGTCGATACTATCGACC
>site_31
CTCTATCGATACTATCGCAG
>site_32
CCACTGCGATAGTATCGATA
>site_33
TGCGTTCGATAGTATCGATG
>site_34
CGGCATCGATACTATCGAAC
>site_35
ATGTATCGATACTATCGCGA
>site_36
CACTCGCGATAGTATCGATA
>site_37
CACGCACGATAGTATCGATA
>site_38
ACGTATCGATACTATCGTGC
>site_39
TGCCATCGATAGTTCTGGCT
>site_40
GGGAATCGATAGTGCCGGCA
>site_41
AACCATCGATTGTATTCACT
>site_42
ATACATCGATAGTATCGACT
>site_43
GTTAGTCGATACTATCGATG
>site_44
CGCAGTCGATACTATCGGCA
>site_45
TAGTGCCGATAGTATCGACT
>site_46
TTACACCGATACTTTCAAAT
>site_47
CGGCGCCGATACTATCGATA
>site_48
TTGTATCGATAGTATCGGCG
>site_49
CAACCACGGCAGTATCGAGA
>site_50
TTATATCGATGTTATCGCGA
>site_51
TAACATTGAGTGTATCGCAG
>site_52
ATTTATCGATAGTCTCGGTG
>site_53
GCTCACCGAGACTATCGATA
>site_54
TACTATCGTTACTATCGATA
>site_55
AGCTATCGATAGTAACGATA
>site_56
TGTAAGCAATAGTATCGCAG
>site_57
AAAGGGCGATACTATCGATT
>site_58
GCCAATCGATAGTATCGCCC
>site_59
ATACATCGATATCATCGCGA
>site_60
ATCTATCGATAGTATCGCAT
>site_61
TCCATGCGATACTATCGATA
>site_62
ATTAATCGATACTATCGACA
>site_63
CACTGTCGATAGTATCGATT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m2_rc.png
;
a	8	3	4	0	2	21	3	22	1	2	23	1	0	1	22	1	19	2	8	16	4	2	5	9
c	6	6	2	23	0	3	0	1	11	1	1	2	26	0	1	4	1	10	2	0	6	18	2	7
g	4	9	7	1	24	0	0	0	14	0	2	0	0	25	2	0	4	11	2	4	4	2	16	5
t	8	8	13	2	0	2	23	3	0	23	0	23	0	0	1	21	2	3	14	6	12	4	3	5
//
; Sites	26
>site_0
ACTCGATAGAGCCGATAGTATCGA
>site_1
ACTCGATACTATCGGCTCTATCGA
>site_2
CTGCGATAGTATCGCTGACAAATA
>site_3
CGATGCTACTATCGATAGTATCGA
>site_4
GTTCGATACTATCGATAGTAGCAT
>site_5
TATCGATAGTATCGAACCGTGCAT
>site_6
GGTCGATAGTATCGACAGAGCGGC
>site_7
CTGCGATAGTATCGATAGAGCGAC
>site_8
GTTCGATAGTATCGATGCCGCTTG
>site_9
TGTTAAATGTATCGATACTATCGC
>site_10
TCGCGATAGTATCGATACATTTAA
>site_11
GCACGATAGTATCGATACGTACGA
>site_12
ACTCGTACGTATCGATACTATCGT
>site_13
AGTCGATACTATCGATGTATACAG
>site_14
AGTCGATACTATCGGCACTATCGG
>site_15
TGCCGATAGTGCCGATAGTATCGA
>site_16
CGCCGATACTATCGATACAAGCCC
>site_17
CTGGGCTTGTATCGATAGTATCGG
>site_18
TCGCGATAACATCGATATAACTGC
>site_19
CTGCGATACACTCAATGTTATCGG
>site_20
TGACACTACTATCGTTACTATCGA
>site_21
TATCGATAGTAACGATAGTAGTGT
>site_22
ATACGTATCTATCGATAGTATCGC
>site_23
ATGCGATACTATCGATAGATACGT
>site_24
TGTCGATAGTATCGATTAATCATC
>site_25
AATCGATACTATCGACAGTGCCCA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m3_rc.png
;
a	11	4	5	0	3	25	3	26	0	1	27	1	0	0	25	2	20	3	9	14	4	1	7	12
c	6	5	8	27	0	3	0	1	12	0	0	2	30	0	1	5	2	10	5	1	5	18	4	6
g	4	13	4	1	27	0	0	0	18	0	2	0	0	30	2	1	3	15	2	7	6	3	16	4
t	9	8	13	2	0	2	27	3	0	29	1	27	0	0	2	22	5	2	14	8	15	8	3	8
//
; Sites	30
>site_0
AGCCGATACTATCGATGTATTTAT
>site_1
CACCGATAGTATCGCAAAAGTTAA
>site_2
ACTCGATAGAGCCGATAGTATCGA
>site_3
ACTCGATACTATCGGCTCTATCGA
>site_4
AGCCGATAGTATCGAGTGCAATTA
>site_5
ATACGATACTATCGATAGCCGTCA
>site_6
TTCCAATAGTATCGATTGCTTTGT
>site_7
CGATGCTACTATCGATAGTATCGA
>site_8
GTTCGATACTATCGATAGTAGCAT
>site_9
TATCGATAGTATCGAACCGTGCAT
>site_10
GGTCGATAGTATCGACAGAGCGGC
>site_11
CTGCGATAGTATCGATAGAGCGAC
>site_12
GTTCGATAGTATCGATGCCGCTTG
>site_13
TGTTAAATGTATCGATACTATCGC
>site_14
TCGCGATAGTATCGATACATTTAA
>site_15
GCACGATAGTATCGATACGTACGA
>site_16
ACTCGTACGTATCGATACTATCGT
>site_17
AGTCGATACTATCGATGTATACAG
>site_18
TGCCGATAGTATCGACTGCGTGCT
>site_19
AGTCGATACTATCGGCACTATCGG
>site_20
TGCCGATAGTGCCGATAGTATCGA
>site_21
CGCCGATAGTTTCGTTCATGGCGA
>site_22
CGCCGATACTATCGATACAAGCCC
>site_23
CTGGGCTTGTATCGATAGTATCGG
>site_24
TGACACTACTATCGTTACTATCGA
>site_25
TATCGATAGTAACGATAGTAGTGT
>site_26
ATACGTATCTATCGATAGTATCGC
>site_27
ATGCGATACTATCGATAGATACGT
>site_28
TGTCGATAGTATCGATTAATCATC
>site_29
AATCGATACTATCGACAGTGCCCA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m4_rc.png
;
a	19	24	59	59	59	59	0	59	18	17
c	11	11	0	0	0	0	0	0	11	15
g	15	7	0	0	0	0	0	0	5	11
t	14	17	0	0	0	0	59	0	25	16
//
; Sites	59
>site_0
AAAAAATACG
>site_1
ATAAAATAAA
>site_2
AGAAAATAAC
>site_3
CAAAAATATG
>site_4
TAAAAATATT
>site_5
ATAAAATATA
>site_6
AAAAAATATT
>site_7
TAAAAATAGG
>site_8
GAAAAATAAA
>site_9
TAAAAATAAA
>site_10
GCAAAATAGG
>site_11
GAAAAATATC
>site_12
TTAAAATATC
>site_13
CAAAAATAAA
>site_14
GAAAAATAAT
>site_15
GAAAAATACC
>site_16
GTAAAATACC
>site_17
ACAAAATATT
>site_18
AGAAAATATA
>site_19
GGAAAATATA
>site_20
AGAAAATACT
>site_21
CCAAAATATT
>site_22
GCAAAATAAA
>site_23
TAAAAATAAT
>site_24
ATAAAATAAA
>site_25
GTAAAATACC
>site_26
CAAAAATATT
>site_27
CTAAAATATC
>site_28
TTAAAATAGT
>site_29
ATAAAATATC
>site_30
TCAAAATACG
>site_31
CTAAAATATC
>site_32
GAAAAATATG
>site_33
CAAAAATATA
>site_34
CCAAAATAAA
>site_35
GCAAAATAGT
>site_36
GAAAAATAAG
>site_37
ATAAAATATG
>site_38
TAAAAATAGT
>site_39
GTAAAATAAA
>site_40
TAAAAATACT
>site_41
AAAAAATATG
>site_42
TCAAAATATT
>site_43
CTAAAATATA
>site_44
ACAAAATATA
>site_45
TAAAAATAAT
>site_46
AGAAAATACC
>site_47
ACAAAATATC
>site_48
ATAAAATAAG
>site_49
CGAAAATAAA
>site_50
CAAAAATACT
>site_51
ACAAAATATC
>site_52
TAAAAATACC
>site_53
TTAAAATACC
>site_54
TTAAAATATG
>site_55
GGAAAATATT
>site_56
GTAAAATAAC
>site_57
AAAAAATAAA
>site_58
AAAAAATAAA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m5_rc.png
;
; Host name	rsat
; Job started	2025-04-28.044649
; Job done	2025-04-28.044651
; Seconds	0.16
;	user	0.16
;	system	0.05
;	cuser	1.27
;	csystem	0.21
