/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila
	match_table_html	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_index.html
 Matrices
	file1	19 matrices	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	24	50
		file1	2	20	64
		file1	3	24	26
		file1	4	24	30
		file1	5	10	59
		file1	6	14	97
		file1	7	14	93
		file1	8	24	35
		file1	9	24	43
		file1	10	24	32
		file1	11	22	51
		...	9 more matrices
	file2	41 matrices	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
		file2		1		6		45.00005
		file2		2		6		18
		file2		3		6		14
		file2		4		8		49.00004
		file2		5		8		18.00005
		file2		6		7		21
		file2		7		11		16
		file2		8		8		8
		file2		9		7		11
		file2		10		8		10
		file2		11		9		13
		...	31 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_6nt_m2 Dref positions_6nt_m2 Dref 0.889 0.635 14 10 10 14 0.7143 0.7143 1.0000 R 2
positions_6nt_m1 Dref positions_6nt_m1 Dref 0.885 0.632 14 10 10 14 0.7143 0.7143 1.0000 D 2
positions_7nt_m2 Dref positions_7nt_m2 Dref 0.881 0.629 14 10 10 14 0.7143 0.7143 1.0000 R 3
oligos_7nt_mkv2_m5 br-Z4 oligos_7nt_mkv2_m5 br-Z4 0.811 0.590 11 8 8 11 0.7273 0.7273 1.0000 R 3
positions_7nt_m1 Dref positions_7nt_m1 Dref 0.887 0.554 16 10 10 16 0.6250 0.6250 1.0000 R 3
dyads_m4 hb dyads_m4 hb 0.702 0.526 12 9 9 12 0.7500 0.7500 1.0000 D 0
oligos_6nt_mkv2_m5 hb oligos_6nt_mkv2_m5 hb 0.715 0.520 10 9 8 11 0.7273 0.8000 0.8889 D -1
oligos_7nt_mkv2_m5 zen oligos_7nt_mkv2_m5 zen 0.895 0.488 11 6 6 11 0.5455 0.5455 1.0000 D 1
oligos_6nt_mkv2_m5 Antp oligos_6nt_mkv2_m5 Antp 0.813 0.488 10 6 6 10 0.6000 0.6000 1.0000 D 4
oligos_7nt_mkv2_m5 Antp oligos_7nt_mkv2_m5 Antp 0.875 0.477 11 6 6 11 0.5455 0.5455 1.0000 D 1
oligos_7nt_mkv2_m5 br-Z2 oligos_7nt_mkv2_m5 br-Z2 0.733 0.467 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_6nt_mkv2_m5 ap oligos_6nt_mkv2_m5 ap 0.769 0.462 10 6 6 10 0.6000 0.6000 1.0000 D 4
dyads_m4 br-Z3 dyads_m4 br-Z3 0.715 0.460 12 11 9 14 0.6429 0.7500 0.8182 R 3
oligos_7nt_mkv2_m5 abd-A oligos_7nt_mkv2_m5 abd-A 0.837 0.456 11 6 6 11 0.5455 0.5455 1.0000 D 2
oligos_6nt_mkv2_m5 zen oligos_6nt_mkv2_m5 zen 0.756 0.453 10 6 6 10 0.6000 0.6000 1.0000 D 4
oligos_6nt_mkv2_m5 br-Z3 oligos_6nt_mkv2_m5 br-Z3 0.725 0.446 10 11 8 13 0.6154 0.8000 0.7273 R 2
oligos_6nt_mkv2_m2 Dref oligos_6nt_mkv2_m2 Dref 0.872 0.436 20 10 10 20 0.5000 0.5000 1.0000 D 2
oligos_7nt_mkv2_m5 gt oligos_7nt_mkv2_m5 gt 0.846 0.423 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_6nt_mkv2_m5 abd-A oligos_6nt_mkv2_m5 abd-A 0.701 0.421 10 6 6 10 0.6000 0.6000 1.0000 R 3
oligos_6nt_mkv2_m5 gt oligos_6nt_mkv2_m5 gt 0.751 0.410 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_7nt_mkv2_m5 ap oligos_7nt_mkv2_m5 ap 0.747 0.408 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m5 vvl oligos_7nt_mkv2_m5 vvl 0.744 0.406 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv2_m5 cad oligos_7nt_mkv2_m5 cad 0.749 0.403 11 9 7 13 0.5385 0.6364 0.7778 R -2 
 Host name	rsat
 Job started	2025-04-28.044810
 Job done	2025-04-28.044814
 Seconds	0.3
	user	0.3
	system	0.15
	cuser	3.69
;	csystem	0.61