; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	13	12	7	1	2	30	6	36	2	2	39	1	0	1	39	1	32	4	10	23	7	3	9	22
c	13	12	6	37	3	8	4	1	35	2	2	2	46	0	1	6	3	9	5	2	8	25	11	9
g	9	12	14	5	37	4	2	4	9	1	4	1	0	45	4	4	8	26	4	10	7	5	24	6
t	11	10	19	3	4	4	34	5	0	41	1	42	0	0	2	35	3	7	27	11	24	13	2	9
//
; Sites	46
>site_0
GGTCGATACTATCGATGACGCTCA
>site_1
AGCCGATACTATCGATGTATTTAT
>site_2
TTGCGATACTATCGGTGTGTATCG
>site_3
TAGTGTTTCTATCGATATGGTTAT
>site_4
CCACTATACTATCGAGGATGTTAT
>site_5
CCACTATACTATCGAGGATGTTGT
>site_6
ACTCGATAGAGCCGATAGTATCGA
>site_7
ACTCGATACTATCGGCTCTATCGA
>site_8
GCGCGATGCTATCGGTATCTTAGA
>site_9
ATACGATACTATCGATAGCCGTCA
>site_10
GCTGACGGCTATCGATAGTATCGT
>site_11
CGATGCTACTATCGATAGTATCGA
>site_12
GTTCGATACTATCGATAGTAGCAT
>site_13
TGTCGATACTATCGACCGTTCACA
>site_14
GGTCGATAGTATCGACAGAGCGGC
>site_15
GTGCCGCTCTGTCGATACTATCGA
>site_16
CAGCTAAAATATCGATGGTGTGTC
>site_17
CAGTCGCTCTATCGATACTATCGC
>site_18
CTGCGATAGTATCGATAGAGCGAC
>site_19
CCGATGTGCGTTCGATAGTATCGA
>site_20
CATCGATACTATCGAACGCACATC
>site_21
TCGCGATAGTATCGATACATTTAA
>site_22
TATCGATACTATCGCGAGTGGCCA
>site_23
GTTGGCCACTCGCGATAGTATCGA
>site_24
TATCGATACTATCGTGCGTGCTAC
>site_25
GCACGATAGTATCGATACGTACGA
>site_26
ACTCGTACGTATCGATACTATCGT
>site_27
AGCCGCAACTATCGACAGATACAA
>site_28
CCCCGCAACCATCGATTGTATTCA
>site_29
AGTCGATACTATCGATGTATACAG
>site_30
AGTCGATACTATCGGCACTATCGG
>site_31
TGCCGATAGTGCCGATAGTATCGA
>site_32
CGCCGATACTATCGATACAAGCCC
>site_33
CTGGGCTTGTATCGATAGTATCGG
>site_34
TCGCGATAACATCGATATAACTGC
>site_35
CTGCGATACACTCAATGTTATCGG
>site_36
CACCGAGACTATCGATAAATATCG
>site_37
TGACACTACTATCGTTACTATCGA
>site_38
TATCGATAGTAACGATAGTAGTGT
>site_39
TATCGTTACTATCGATAGCTGGCA
>site_40
AATGCCAGCTATCGATAGTAACGA
>site_41
GGGCGATACTATCGATTGGCGGCA
>site_42
ATACGTATCTATCGATAGTATCGC
>site_43
ATGCGATACTATCGATAGATACGT
>site_44
AATCGATACTATCGACAGTGCCCA
>site_45
AATGGGCACTGTCGATAGTATCGA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1_rc.png
;
a	14	19	20	15	7	26	4	0	2	50	1	49	1	1	50	2	3	2	30	10	14	10	14	13
c	14	16	9	19	21	9	8	51	0	0	0	0	18	1	1	0	47	1	12	12	7	8	13	5
g	15	5	9	9	6	11	7	0	48	1	2	1	31	0	0	1	0	48	5	8	20	20	10	17
t	9	12	14	9	18	6	33	1	2	1	49	2	2	50	1	49	2	1	5	22	11	14	15	17
//
; Sites	52
>site_0
CAGCGGTCGATACTATCGATGACG
>site_1
GCGTCATCGATAGTATCGACCGCT
>site_2
AATACATCGATAGTATCGGCTTGT
>site_3
GACAAGCCGATACTATCGATGTAT
>site_4
GCTGCCACGATAGTATCGGTCGCT
>site_5
TACACACCGATAGTATCGCAAAAG
>site_6
ACCATATCGATAGAAACACTATCA
>site_7
GAAACGCCGATAGTATCGAATGAT
>site_8
TATCATTCGATACTATCGGCGTTT
>site_9
CTAACCACTATACTATCGAGGATG
>site_10
ACATCCTCGATAGTATAGTGGTTA
>site_11
ACATCCTCGATAGTATAGTGGTTA
>site_12
CTAACCACTATACTATCGAGGATG
>site_13
ATAGAGCCGATAGTATCGAGTGCA
>site_14
CGGCTATCGATAGTATCGTATGCG
>site_15
CGCACTGCGATAGTATCGCTGACA
>site_16
TTGTCAGCGATACTATCGCAGTGC
>site_17
TCTATTCCAATAGTATCGATTGCT
>site_18
ATACTATCGATAGTAGCATCGATG
>site_19
CTACTATCGATAGTATCGAACCGT
>site_20
CACGGTTCGATACTATCGATAGTA
>site_21
GAACGGTCGATAGTATCGACAGAG
>site_22
GCTCTGTCGATACTATCGACCGTT
>site_23
ACACCATCGATATTTTAGCTGCGA
>site_24
GCTCTATCGATACTATCGCAGTGG
>site_25
ACCACTGCGATAGTATCGATAGAG
>site_26
GTGCGTTCGATAGTATCGATGCCG
>site_27
GCGGCATCGATACTATCGAACGCA
>site_28
AATGTATCGATACTATCGCGAGTG
>site_29
CCACTCGCGATAGTATCGATACAT
>site_30
GCACGCACGATAGTATCGATACGT
>site_31
TACGTATCGATACTATCGTGCGTG
>site_32
CAACCATCGATTGTATTCACTCTA
>site_33
TATACATCGATAGTATCGACTAAC
>site_34
GGTTAGTCGATACTATCGATGTAT
>site_35
ATAGTGCCGATAGTATCGACTGCG
>site_36
AAAACCTCGGAAGTATTTATGTAG
>site_37
ACGGCGCCGATACTATCGATACAA
>site_38
CTTGTATCGATAGTATCGGCGCCG
>site_39
ATAACATTGAGTGTATCGCAGTAA
>site_40
TATTTATCGATAGTCTCGGTGAGC
>site_41
AGCTCACCGAGACTATCGATAAAT
>site_42
CTACTATCGTTACTATCGATAGCT
>site_43
CAGCTATCGATAGTAACGATAGTA
>site_44
TTGTAAGCAATAGTATCGCAGTGC
>site_45
GAAAGGGCGATACTATCGATTGGC
>site_46
CGCCAATCGATAGTATCGCCCTTT
>site_47
CCACTCGCGATGATATCGATGTAT
>site_48
GATACATCGATATCATCGCGAGTG
>site_49
TATCTATCGATAGTATCGCATGGA
>site_50
GATTAATCGATACTATCGACAGTG
>site_51
GCACTGTCGATAGTATCGATTAAT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m2_rc.png
;
a	11	4	5	0	3	26	3	27	0	1	28	1	0	0	25	2	20	4	9	15	5	2	7	13
c	7	5	8	28	0	3	0	1	12	0	0	2	31	0	2	5	2	10	6	1	5	18	4	6
g	4	13	5	1	28	0	0	0	19	0	2	0	0	31	2	1	4	15	2	7	6	3	16	4
t	9	9	13	2	0	2	28	3	0	30	1	28	0	0	2	23	5	2	14	8	15	8	4	8
//
; Sites	31
>site_0
AGCCGATACTATCGATGTATTTAT
>site_1
CACCGATAGTATCGCAAAAGTTAA
>site_2
ACTCGATAGAGCCGATAGTATCGA
>site_3
ACTCGATACTATCGGCTCTATCGA
>site_4
AGCCGATAGTATCGAGTGCAATTA
>site_5
ATACGATACTATCGATAGCCGTCA
>site_6
CTGCGATAGTATCGCTGACAAATA
>site_7
TTCCAATAGTATCGATTGCTTTGT
>site_8
CGATGCTACTATCGATAGTATCGA
>site_9
GTTCGATACTATCGATAGTAGCAT
>site_10
TATCGATAGTATCGAACCGTGCAT
>site_11
GGTCGATAGTATCGACAGAGCGGC
>site_12
CTGCGATAGTATCGATAGAGCGAC
>site_13
GTTCGATAGTATCGATGCCGCTTG
>site_14
TGTTAAATGTATCGATACTATCGC
>site_15
TCGCGATAGTATCGATACATTTAA
>site_16
GCACGATAGTATCGATACGTACGA
>site_17
ACTCGTACGTATCGATACTATCGT
>site_18
AGTCGATACTATCGATGTATACAG
>site_19
TGCCGATAGTATCGACTGCGTGCT
>site_20
AGTCGATACTATCGGCACTATCGG
>site_21
TGCCGATAGTGCCGATAGTATCGA
>site_22
CGCCGATAGTTTCGTTCATGGCGA
>site_23
CGCCGATACTATCGATACAAGCCC
>site_24
CTGGGCTTGTATCGATAGTATCGG
>site_25
TGACACTACTATCGTTACTATCGA
>site_26
TATCGATAGTAACGATAGTAGTGT
>site_27
ATACGTATCTATCGATAGTATCGC
>site_28
ATGCGATACTATCGATAGATACGT
>site_29
TGTCGATAGTATCGATTAATCATC
>site_30
AATCGATACTATCGACAGTGCCCA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m3_rc.png
;
a	27	21	23	63	66	63	67	0	66	16	21	17
c	15	12	11	1	0	0	0	0	0	12	15	7
g	2	17	6	2	0	0	0	1	1	5	13	20
t	23	17	27	1	1	4	0	66	0	34	18	23
//
; Sites	67
>site_0
CAAAAAATACGG
>site_1
AATAAAATAAAG
>site_2
TAGAAAATAACA
>site_3
ACAAAAATATGG
>site_4
TTAAAAATATTT
>site_5
AATAAAATATAT
>site_6
TCTGAAATATAT
>site_7
AAAAAAATATTA
>site_8
CTAAAAATAGGA
>site_9
CATATAATATAC
>site_10
TATAATATACTA
>site_11
CGAAAAATAAAA
>site_12
ATAAAAATAAAC
>site_13
TGCAAAATAGGT
>site_14
TGAAAAATATCG
>site_15
ACAAAAATAAAT
>site_16
AGAAAAATAATT
>site_17
TGTCAAATATCG
>site_18
CGAAAAATACCG
>site_19
TGTAAAATACCA
>site_20
CACAAAATATTT
>site_21
TAGAAAATATAA
>site_22
TGGAAAATATAA
>site_23
AAGAAAATACTT
>site_24
ACCAAAATATTG
>site_25
AGCAAAATAAAT
>site_26
CTAAAAATAATG
>site_27
TATAAAATAAAT
>site_28
ATTAAAATGTAG
>site_29
CGTAAAATACCT
>site_30
TCAAAAATATTT
>site_31
TCTAAAATATCG
>site_32
ATTAATATATAG
>site_33
ATTAAAATAGTA
>site_34
AATAAAATATCT
>site_35
ATTAAAAGATAT
>site_36
TTCAAAATACGA
>site_37
GCTAAAATATCG
>site_38
AGTGAAATATGT
>site_39
ATTAATATATAT
>site_40
TCTTAAATATTA
>site_41
TGAAAAATATGG
>site_42
CCAAAAATATAT
>site_43
GCCAAAATAAAC
>site_44
AGCAAAATAGTC
>site_45
CGAAAAATAAGT
>site_46
TATAAAATATGG
>site_47
ATAAAAATAGTA
>site_48
CGTAAAATAAAT
>site_49
TTAAAAATACTG
>site_50
TAAAAAATATGG
>site_51
ATCAAAATATTA
>site_52
ACTAAAATATAC
>site_53
AACAAAATATAC
>site_54
CATAATATATGT
>site_55
CTAAAAATAATT
>site_56
AAGAAAATACCT
>site_57
CACAAAATATCG
>site_58
AATAAAATAAGG
>site_59
ACAAAAATACTA
>site_60
CACAAAATATCA
>site_61
TTAAAAATACCA
>site_62
ATTAAAATACCG
>site_63
TTTAAAATATGG
>site_64
TGGAAAATATTT
>site_65
TGTAAAATAACA
>site_66
AAAAAAATAAAC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m4_rc.png
;
a	9	7	5	3	1	38	0	2	34	31	13	15
c	10	10	1	5	37	0	0	37	3	3	9	8
g	11	14	30	30	1	1	37	0	2	4	7	8
t	9	8	3	1	0	0	2	0	0	1	10	8
//
; Sites	39
>site_0
AAGGCAGCGATA
>site_1
CCAGCAGCAAAC
>site_2
CGGGCAGCAGCA
>site_3
GCAGCAGCAACA
>site_4
GCGACAGCAAGA
>site_5
GTGGCAGCCAGC
>site_6
TCGCCAGCAACC
>site_7
TGGCCAGCAAAA
>site_8
GAAGCAGCAAAG
>site_9
CGGCCAGCAAAA
>site_10
TAGGCAGAAATA
>site_11
GCGGCAGAAATG
>site_12
AGGGCAGCCAGA
>site_13
AGCGCAGCAAGC
>site_14
GAAGCAGCAAGA
>site_15
GCGGCAGCAACG
>site_16
CGGTCAGCAACC
>site_17
GTGGCAGCAGAT
>site_18
CGGGCAGCAGTG
>site_19
AGTGCAGCAAGT
>site_20
TGGGCAGCCAAC
>site_21
CAGCCAGCAATT
>site_22
TCGGCATCAAAA
>site_23
TCGGCATCAAAA
>site_24
TGGGCAGCAGTG
>site_25
CCGGGAGCAATC
>site_26
CTGGCAGCATCG
>site_27
GTGACAGCAAAT
>site_28
TGGGCGGCAACT
>site_29
TCGACAGCAAAC
>site_30
ATGGCAGCACAT
>site_31
AGTGCAGCAATA
>site_32
ATGGCAGCGAAT
>site_33
CGTGCAGCAATT
>site_34
CTGGCAGCACCG
>site_35
AAAGCAGCAACA
>site_36
AGGGAAGCAAGA
>site_37
GAGCCAGCAATA
>site_38
GTGGCAGCACAG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.044641_2025-04-28.044641_ntYsd5/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m5_rc.png
;
; Host name	rsat
; Job started	2025-04-28.044706
; Job done	2025-04-28.044708
; Seconds	0.18
;	user	0.18
;	system	0.06
;	cuser	1.26
;	csystem	0.19
