RSAT - peak-motifs result

Analysis: TnaA_WD_PREs (28/04/2025 20:36)

peak-motifs  -v 1 -title TnaA_WD_PREs -i $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203522_2025-04-28.203522_Er6E3H/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 10 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db DMMPMM_drosophila tf $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203522_2025-04-28.203522_Er6E3H

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: cgatactatcgatagtatcg (sig=9.81; e-value=1.5e-10) RC: cgatactatcgatagtatcg oligos_6nt_mkv2_m2 assembly: aacatcgatagtatcga (sig=9.81; e-value=1.5e-10) RC: tcgatactatcgatgtt oligos_6nt_mkv2_m3 assembly: aaaata (sig=1.33; e-value=0.047) RC: tatttt oligos_6nt_mkv2_m4 : (sig=; e-value=1) RC: oligos_6nt_mkv2_m5 : (sig=; e-value=1) RC: oligos_6nt_mkv2_m6 : (sig=; e-value=1) RC: oligos_6nt_mkv2_m7 : (sig=; e-value=1) RC: oligos_6nt_mkv2_m8 : (sig=; e-value=1) RC: oligos_6nt_mkv2_m9 : (sig=; e-value=1) RC: oligos_6nt_mkv2_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_6nt	Not a single significant pattern	[local_words_6nt]
positions_6nt	positions_6nt_m1 assembly: tcgatag (sig=1.97; e-value=0.011) RC: ctatcga positions_6nt_m2 : (sig=; e-value=1) RC: positions_6nt_m3 : (sig=; e-value=1) RC: positions_6nt_m4 : (sig=; e-value=1) RC: positions_6nt_m5 : (sig=; e-value=1) RC: positions_6nt_m6 : (sig=; e-value=1) RC: positions_6nt_m7 : (sig=; e-value=1) RC: positions_6nt_m8 : (sig=; e-value=1) RC: positions_6nt_m9 : (sig=; e-value=1) RC: positions_6nt_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: cgatactatcgatagtatcg (sig=10.77; e-value=1.7e-11) RC: cgatactatcgatagtatcg oligos_7nt_mkv2_m2 assembly: aaacatcgatagtatcgatg (sig=10.77; e-value=1.7e-11) RC: catcgatactatcgatgttt oligos_7nt_mkv2_m3 assembly: aataaata (sig=1.15; e-value=0.071) RC: tatttatt oligos_7nt_mkv2_m4 assembly: aaaacatcgatagtatcgat (sig=10.77; e-value=1.7e-11) RC: atcgatactatcgatgtttt oligos_7nt_mkv2_m5 assembly: gcgatactatcgatagtatc (sig=10.77; e-value=1.7e-11) RC: gatactatcgatagtatcgc oligos_7nt_mkv2_m6 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m7 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m8 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m9 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_7nt	Not a single significant pattern	[local_words_7nt]
positions_7nt	Not a single significant pattern	[positions_7nt]
dyads	dyads_m1 assembly: cgatactatcgatagtatcg (sig=14.30; e-value=5e-15) RC: cgatactatcgatagtatcg dyads_m2 assembly: aacatcgatagtatcgatgt (sig=14.30; e-value=5e-15) RC: acatcgatactatcgatgtt dyads_m3 assembly: taaaata (sig=3.11; e-value=0.00078) RC: tatttta dyads_m4 assembly: actnnnnnnnnnnnnnngcg (sig=1.88; e-value=0.013) RC: cgcnnnnnnnnnnnnnnagt dyads_m5 assembly: acatcgg (sig=3.37; e-value=0.00043) RC: ccgatgt dyads_m6 assembly: cccannnccc (sig=0.60; e-value=0.25) RC: gggnnntggg dyads_m7 assembly: ccgatagtatcgatactatc (sig=14.30; e-value=5e-15) RC: gatagtatcgatactatcgg dyads_m8 assembly: gcagca (sig=0.32; e-value=0.48) RC: tgctgc dyads_m9 assembly: taannnnnnaaa (sig=0.22; e-value=0.6) RC: tttnnnnnntta dyads_m10 assembly: ctgcac (sig=0.22; e-value=0.6) RC: gtgcag	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=9.81; evalue=1.5e-10 kyCGmTACwATCGATwGTAkCGrm KYCGMTACWATCGATWGTAKCGRM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor kyCGmTACwATCGATwGTAkCGrm Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (37.14%) Max nb of predicted sites per peak: 4  (TnaA-WD_peak_77::chr3R:29063656-29063911(.)) Mean nb of predicted sites per peak: 2.46	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=9.81; evalue=1.5e-10 saamyatCGATAsTATCGatm KATCGATASTATCGATRKTTS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor saamyatCGATAsTATCGatm Dref Dref D 10 0.4762 0.884 0.421 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 12 (34.29%) Max nb of predicted sites per peak: 5  (TnaA-WD_peak_117::chrX:10744996-10745212(.)) Mean nb of predicted sites per peak: 2.58	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=1.33; evalue=0.047 rwAAAATAww WWTATTTTWY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rwAAAATAww hb hb D 8 0.7273 0.716 0.521 NA NA Antp Antp D 6 0.6000 0.813 0.488 NA NA ap ap D 6 0.6000 0.771 0.462 NA NA Total matches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (42.86%) Max nb of predicted sites per peak: 5  (TnaA-WD_peak_116::chrX:5737857-5738203(.)) Mean nb of predicted sites per peak: 1.87	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   positions_6nt_m1	k-mer sig=1.97; evalue=0.011 haTCGATAGyw WRCTATCGATD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor haTCGATAGyw Dref Dref D 9 0.7500 0.914 0.685 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (54.29%) Max nb of predicted sites per peak: 4  (TnaA-WD_peak_77::chr3R:29063656-29063911(.)) Mean nb of predicted sites per peak: 2.11	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_7nt_mkv2_m1	k-mer sig=10.77; evalue=1.7e-11 stCGmTACtATCGATagTAkCGas STCGMTACTATCGATAGTAKCGAS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor stCGmTACtATCGATagTAkCGas Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (37.14%) Max nb of predicted sites per peak: 4  (TnaA-WD_peak_77::chr3R:29063656-29063911(.)) Mean nb of predicted sites per peak: 2.31	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m2	k-mer sig=10.77; evalue=1.7e-11 rvaamcrTCGATASTATCGAyrrw WYYRTCGATASTATCGAYGKTTBY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rvaamcrTCGATASTATCGAyrrw Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (42.86%) Max nb of predicted sites per peak: 5  (TnaA-WD_peak_18::chr2L:16257528-16257751(.)) Mean nb of predicted sites per peak: 2.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m3	k-mer sig=1.15; evalue=0.071 thaATAAATAww WWTATTTATTDA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor thaATAAATAww br-Z4 br-Z4 R 8 0.6667 0.789 0.526 NA NA zen zen D 6 0.5000 0.946 0.473 NA NA gt gt D 7 0.5833 0.764 0.446 NA NA Total matches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 12 (34.29%) Max nb of predicted sites per peak: 3  (TnaA-WD_peak_84::chr4:43674-43954(.)) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m4	k-mer sig=10.77; evalue=1.7e-11 yvsaamcatCGATAsTATCGAtag CTATCGATASTATCGATGKTTSBR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yvsaamcatCGATAsTATCGAtag Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (40.00%) Max nb of predicted sites per peak: 4  (TnaA-WD_peak_18::chr2L:16257528-16257751(.)) Mean nb of predicted sites per peak: 2.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m5	k-mer sig=10.77; evalue=1.7e-11 mcyCGmtACtATCGATastAtCsa TSGATASTATCGATAGTAKCGRGK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mcyCGmtACtATCGATastAtCsa Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (37.14%) Max nb of predicted sites per peak: 5  (TnaA-WD_peak_117::chrX:10744996-10745212(.)) Mean nb of predicted sites per peak: 2.23	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   dyads_m1	k-mer sig=14.30; evalue=5e-15 kyCGmTACwATCGATwGTAkCGrm KYCGMTACWATCGATWGTAKCGRM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor kyCGmTACwATCGATwGTAkCGrm Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (37.14%) Max nb of predicted sites per peak: 4  (TnaA-WD_peak_77::chr3R:29063656-29063911(.)) Mean nb of predicted sites per peak: 2.46	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   dyads_m2	k-mer sig=14.30; evalue=5e-15 saamsrTCGATAsTATCGAtrgrt AYCYATCGATASTATCGAYSKTTS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor saamsrTCGATAsTATCGAtrgrt Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (40.00%) Max nb of predicted sites per peak: 4  (TnaA-WD_peak_117::chrX:10744996-10745212(.)) Mean nb of predicted sites per peak: 2.07	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   dyads_m3	k-mer sig=3.11; evalue=0.00078 wrwAAAATAhw WDTATTTTWYW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wrwAAAATAhw hb hb D 8 0.6667 0.735 0.490 NA NA Antp Antp D 6 0.5455 0.822 0.448 NA NA pan pan D 6 0.5455 0.773 0.422 NA NA Total matches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (45.71%) Max nb of predicted sites per peak: 5  (TnaA-WD_peak_116::chrX:5737857-5738203(.)) Mean nb of predicted sites per peak: 1.88	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   dyads_m4	k-mer sig=1.88; evalue=0.013 sgACTvbmssssmrmtysrGCGky RMCGCYSRAKYKSSSSKVBAGTCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor sgACTvbmssssmrmtysrGCGky Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 11 (31.43%) Max nb of predicted sites per peak: 3  (TnaA-WD_peak_46::chr3L:10871817-10873573(.)) Mean nb of predicted sites per peak: 1.55	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   dyads_m5	k-mer sig=3.37; evalue=0.00043 aaACATCGrtk MAYCGATGTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaACATCGrtk Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (37.14%) Max nb of predicted sites per peak: 4  (TnaA-WD_peak_77::chr3R:29063656-29063911(.)) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   dyads_m6	k-mer sig=0.60; evalue=0.25 hcCCCamcyCCCmv BKGGGRGKTGGGGD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor hcCCCamcyCCCmv Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 8 (22.86%) Max nb of predicted sites per peak: 4  (TnaA-WD_peak_4::chr2L:6078941-6079245(.)) Mean nb of predicted sites per peak: 2.12	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   dyads_m7	k-mer sig=14.30; evalue=5e-15 wstCGATAsTATCGATastwkCgw WCGMWASTATCGATASTATCGASW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wstCGATAsTATCGATastwkCgw Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 11 (31.43%) Max nb of predicted sites per peak: 3  (TnaA-WD_peak_32::chr2R:15931900-15932129(.)) Mean nb of predicted sites per peak: 1.82	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 17   dyads_m8	k-mer sig=0.32; evalue=0.48 swGCAGCAgs SCTGCTGCWS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor swGCAGCAgs Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 8 (22.86%) Max nb of predicted sites per peak: 9  (TnaA-WD_peak_46::chr3L:10871817-10873573(.)) Mean nb of predicted sites per peak: 2.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 18   dyads_m9	k-mer sig=0.22; evalue=0.6 wwTAAwrmwymAAAaw WTTTTKRWKYWTTAWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwTAAwrmwymAAAaw hb hb D 9 0.5625 0.848 0.477 NA NA cad cad R 9 0.5625 0.732 0.412 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 12 (34.29%) Max nb of predicted sites per peak: 3  (TnaA-WD_peak_116::chrX:5737857-5738203(.)) Mean nb of predicted sites per peak: 1.42	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 19   dyads_m10	k-mer sig=0.22; evalue=0.6 ksCTGCACay RTGTGCAGSM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
DMMPMM_drosophila name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ksCTGCACay Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 11 (31.43%) Max nb of predicted sites per peak: 4  (TnaA-WD_peak_46::chr3L:10871817-10873573(.)) Mean nb of predicted sites per peak: 1.45	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title TnaA_WD_PREs -i $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203522_2025-04-28.203522_Er6E3H/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 10 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db DMMPMM_drosophila tf $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203522_2025-04-28.203522_Er6E3H

Warning: Not a single pattern was found in file tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203522_2025-04-28.203522_Er6E3H/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203522_2025-04-28.203522_Er6E3H/results/local_words_6nt/peak-motifs_local_words-2str-noov_6nt_windgroup50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203522_2025-04-28.203522_Er6E3H/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50.tab