One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_motifs/dyads_m9/peak-motifs_dyads_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_motifs/dyads_m9/peak-motifs_dyads_m9_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: dyads_m9_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m9_shift0 (dyads_m9) |
 |
|
|
; dyads_m9; m=0 (reference); ncol1=16; shift=0; ncol=16; wwTAAwrhwymAAAaw
; Alignment reference
a 11 9 0 23 23 9 9 6 9 4 8 22 23 23 11 9
c 3 5 0 0 0 1 1 8 2 7 6 0 0 0 3 5
g 2 2 0 0 0 4 8 3 5 5 5 0 0 0 4 2
t 7 7 23 0 0 9 5 6 7 7 4 1 0 0 5 7
|
| hb_shift7 (hb) |
 |
|
|
; dyads_m9 versus hb; m=1/2; ncol2=9; w=0; offset=7; strand=D; shift=7; score=0.47691; -------mayAAAAAa
; cor=; Ncor=
a 0 0 0 0 0 0 0 30.2913 47.4563 1.00971 96.932 101.981 104 97.9417 102.99 68.6602
c 0 0 0 0 0 0 0 49.4757 16.1553 29.2816 1.00971 1.00971 0 1.00971 1.00971 8.07767
g 0 0 0 0 0 0 0 21.2039 17.165 11.1068 4.03883 0 0 4.03883 0 12.1165
t 0 0 0 0 0 0 0 3.02913 23.2233 62.6019 2.01942 1.00971 0 1.00971 0 15.1456
|
| cad_rc_shift5 (cad_rc) |
 |
|
|
; dyads_m9 versus cad_rc; m=2/2; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.411694; -----WrtYrwAAA--
; cor=; Ncor=
a 0 0 0 0 0 9 8 1 0 7 4 12 11 11 0 0
c 0 0 0 0 0 0 1 3 9 1 2 0 2 0 0 0
g 0 0 0 0 0 0 4 3 0 5 1 1 0 0 0 0
t 0 0 0 0 0 4 0 6 4 0 6 0 0 2 0 0
|