RSAT - compare-matrices result

Analysis: result (28/04/2025 20:38)

Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_DMMPMM_drosophila

Input files

Type	File
file1	peak-motifs_positions_6nt_m1.tf
file2	../../../../../../../../../motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf

Output files

Type	File
match_table_txt	peak-motifs_positions_6nt_m1_vs_db_DMMPMM_drosophila.tab
match_table_html	peak-motifs_positions_6nt_m1_vs_db_DMMPMM_drosophila.html
alignments_1ton	peak-motifs_positions_6nt_m1_vs_db_DMMPMM_drosophila_alignments_1ton.tab
alignments_1ton_html	peak-motifs_positions_6nt_m1_vs_db_DMMPMM_drosophila_alignments_1ton.html

Directories

Type	Directory
output	.
aligned_logos	peak-motifs_positions_6nt_m1_vs_db_DMMPMM_drosophila_aligned_logos