/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila
	match_table_html	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_vs_db/peak-motifs_motifs_vs_db_DMMPMM_drosophila.html
 Matrices
	file1	19 matrices	$RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	24	22
		file1	2	21	23
		file1	3	10	35
		file1	4	11	88
		file1	5	24	18
		file1	6	24	19
		file1	7	12	41
		file1	8	24	23
		file1	9	24	17
		file1	10	24	22
		file1	11	24	16
		...	9 more matrices
	file2	41 matrices	$RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf
		file2		1		6		45.00005
		file2		2		6		18
		file2		3		6		14
		file2		4		8		49.00004
		file2		5		8		18.00005
		file2		6		7		21
		file2		7		11		16
		file2		8		8		8
		file2		9		7		11
		file2		10		8		10
		file2		11		9		13
		...	31 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_6nt_m1 Dref positions_6nt_m1 Dref 0.914 0.685 11 10 9 12 0.7500 0.8182 0.9000 D -1
oligos_7nt_mkv2_m3 br-Z4 oligos_7nt_mkv2_m3 br-Z4 0.789 0.526 12 8 8 12 0.6667 0.6667 1.0000 R 4
oligos_6nt_mkv2_m3 hb oligos_6nt_mkv2_m3 hb 0.716 0.521 10 9 8 11 0.7273 0.8000 0.8889 D -1
dyads_m3 hb dyads_m3 hb 0.735 0.490 11 9 8 12 0.6667 0.7273 0.8889 D -1
oligos_6nt_mkv2_m3 Antp oligos_6nt_mkv2_m3 Antp 0.813 0.488 10 6 6 10 0.6000 0.6000 1.0000 D 4
dyads_m9 hb dyads_m9 hb 0.848 0.477 16 9 9 16 0.5625 0.5625 1.0000 D 7
oligos_7nt_mkv2_m3 zen oligos_7nt_mkv2_m3 zen 0.946 0.473 12 6 6 12 0.5000 0.5000 1.0000 D 2
oligos_6nt_mkv2_m3 ap oligos_6nt_mkv2_m3 ap 0.771 0.462 10 6 6 10 0.6000 0.6000 1.0000 D 4
oligos_6nt_mkv2_m3 zen oligos_6nt_mkv2_m3 zen 0.753 0.452 10 6 6 10 0.6000 0.6000 1.0000 D 4
dyads_m3 Antp dyads_m3 Antp 0.822 0.448 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_6nt_mkv2_m3 br-Z3 oligos_6nt_mkv2_m3 br-Z3 0.728 0.448 10 11 8 13 0.6154 0.8000 0.7273 R 2
oligos_7nt_mkv2_m3 gt oligos_7nt_mkv2_m3 gt 0.764 0.446 12 7 7 12 0.5833 0.5833 1.0000 D 0
oligos_7nt_mkv2_m3 Antp oligos_7nt_mkv2_m3 Antp 0.865 0.433 12 6 6 12 0.5000 0.5000 1.0000 D 2
dyads_m3 pan dyads_m3 pan 0.773 0.422 11 6 6 11 0.5455 0.5455 1.0000 D 0
oligos_6nt_mkv2_m2 Dref oligos_6nt_mkv2_m2 Dref 0.884 0.421 21 10 10 21 0.4762 0.4762 1.0000 D 3
dyads_m3 ap dyads_m3 ap 0.766 0.418 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 br-Z2 oligos_7nt_mkv2_m3 br-Z2 0.711 0.415 12 7 7 12 0.5833 0.5833 1.0000 R 4
dyads_m3 br-Z3 dyads_m3 br-Z3 0.723 0.413 11 11 8 14 0.5714 0.7273 0.7273 R 3
dyads_m9 cad dyads_m9 cad 0.732 0.412 16 9 9 16 0.5625 0.5625 1.0000 R 5
dyads_m3 zen dyads_m3 zen 0.754 0.411 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv2_m3 abd-A oligos_7nt_mkv2_m3 abd-A 0.815 0.408 12 6 6 12 0.5000 0.5000 1.0000 D 3
oligos_6nt_mkv2_m3 gt oligos_6nt_mkv2_m3 gt 0.739 0.403 10 7 6 11 0.5455 0.6000 0.8571 D -1 
 Host name	rsat
 Job started	2025-04-28.203841
 Job done	2025-04-28.203845
 Seconds	0.28
	user	0.28
	system	0.16
	cuser	3.26
;	csystem	0.54