; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	4	4	0	4	13	5	16	2	6	19	1	0	1	19	1	13	0	1	16	3	0	2	10	7
c	5	6	17	2	6	0	3	15	3	1	2	20	1	0	1	0	5	2	1	0	16	3	2	6
g	6	2	3	16	0	1	2	5	0	1	0	1	20	2	1	3	15	3	0	6	2	17	6	5
t	7	10	2	0	3	16	1	0	13	1	19	1	0	1	19	6	2	16	5	13	4	0	4	4
//
; Sites	22
>site_0
CTCGATAGAGCCGATAGTATCGAG
>site_1
CTCGATACTATCGGCTCTATCGAG
>site_2
AACAAAGCAATCGATACTATTGGA
>site_3
TCCAATAGTATCGATTGCTTTGTT
>site_4
TCCGCTCCTATCCGATGTATCGGA
>site_5
TCCGATACATCGGATAGGAGCGGA
>site_6
GATGCTACTATCGATAGTATCGAA
>site_7
TTCGATACTATCGATAGTAGCATC
>site_8
CACGATAGTATCGATACGTACGAG
>site_9
CTCGTACGTATCGATACTATCGTG
>site_10
GTGAATACAATCGATGGTTGCGGG
>site_11
CCCGCAACCATCGATTGTATTCAC
>site_12
TCTGTATACATCGATAGTATCGAC
>site_13
GTCGATACTATCGATGTATACAGA
>site_14
TCCGATAACATTGAGTGTATCGCA
>site_15
TGCGATACACTCAATGTTATCGGA
>site_16
GACACTACTATCGTTACTATCGAT
>site_17
ATCGATAGTAACGATAGTAGTGTC
>site_18
ATCGTTACTATCGATAGCTGGCAT
>site_19
ATGCCAGCTATCGATAGTAACGAT
>site_20
GGCGATACTATCGATTGGCGGCAC
>site_21
GTGCCGCCAATCGATAGTATCGCC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1_rc.png
;
a	3	8	7	5	2	9	1	0	0	14	1	15	0	0	15	1	0	0	13	3	5	4	6	3
c	6	2	3	6	6	2	2	15	0	0	0	0	6	0	1	0	15	0	2	3	3	2	3	3
g	5	3	3	1	4	4	1	0	16	1	2	0	10	0	0	0	0	15	1	0	5	6	4	2
t	2	3	3	4	4	1	12	1	0	1	13	1	0	16	0	15	1	1	0	10	3	4	3	8
//
; Sites	16
>site_0
CAGCGGTCGATACTATCGATGACG
>site_1
GCGTCATCGATAGTATCGACCGCT
>site_2
GAAACGCCGATAGTATCGAATGAT
>site_3
CTACTATCGATAGTATCGAACCGT
>site_4
CACGGTTCGATACTATCGATAGTA
>site_5
GCACGCACGATAGTATCGATACGT
>site_6
TATACATCGATAGTATCGACTAAC
>site_7
GGTTAGTCGATACTATCGATGTAT
>site_8
AAAACCTCGGAAGTATTTATGTAG
>site_9
ATAACATTGAGTGTATCGCAGTAA
>site_10
TATTTATCGATAGTCTCGGTGAGC
>site_11
AGCTCACCGAGACTATCGATAAAT
>site_12
CTACTATCGTTACTATCGATAGCT
>site_13
CAGCTATCGATAGTAACGATAGTA
>site_14
GAAAGGGCGATACTATCGATTGGC
>site_15
CGCCAATCGATAGTATCGCCCTTT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m2_rc.png
;
a	14	13	13	38	38	35	38	0	38	11	11
c	8	7	6	0	0	0	0	0	0	9	8
g	1	10	6	0	0	0	0	0	0	5	8
t	15	8	13	0	0	3	0	38	0	13	11
//
; Sites	38
>site_0
AATAAAATATA
>site_1
AAAAAAATATT
>site_2
CTAAAAATAGG
>site_3
TATAATATACT
>site_4
ACTAATATAAG
>site_5
ACTAATATAGA
>site_6
CGAAAAATAAA
>site_7
ATAAAAATAAA
>site_8
TGCAAAATAGG
>site_9
TAGAAAATATA
>site_10
TGGAAAATATA
>site_11
AAGAAAATACT
>site_12
ACCAAAATATT
>site_13
AGCAAAATAAA
>site_14
CTAAAAATAAT
>site_15
TATAAAATAAA
>site_16
CGTAAAATACC
>site_17
TCAAAAATATT
>site_18
TCTAAAATATC
>site_19
TAAAAAATACA
>site_20
AGCAAAATAGT
>site_21
CGAAAAATAAG
>site_22
TATAAAATATG
>site_23
ATAAAAATAGT
>site_24
CGTAAAATAAA
>site_25
TTAAAAATACT
>site_26
TAAAAAATATG
>site_27
AAGAAAATACC
>site_28
CACAAAATATC
>site_29
AATAAAATAAG
>site_30
GCGAAAATAAA
>site_31
ACAAAAATACT
>site_32
CACAAAATATC
>site_33
TTAAAAATACC
>site_34
ATTAAAATACC
>site_35
TTTAAAATATG
>site_36
TGGAAAATATT
>site_37
TGTAAAATAAC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m3_rc.png
;
a	6	3	24	0	0	7	4	7	4	6	4	5	7	8	7	4	4	4	10	0	0	1	5	6
c	8	5	0	23	1	6	7	11	7	7	8	7	8	5	11	5	6	6	4	0	22	0	5	7
g	7	10	0	1	0	6	6	3	10	6	6	8	4	6	3	5	4	9	7	24	0	22	6	1
t	3	6	0	0	23	5	7	3	3	5	6	4	5	5	3	10	10	5	3	0	2	1	8	10
//
; Sites	24
>site_0
CGACTGCACTCTCACACTCGCGAC
>site_1
CGACTCGCCTCACACTCTCGCTGT
>site_2
ATACTATCGGCGTTTCCGCGCGTC
>site_3
GTACTTGTAATCGAAGTAGGCGTT
>site_4
ATACTATCGGCTCTATCGAGTGTT
>site_5
CGACTCTGCCTCCACTTCGGCGGC
>site_6
TTACCCAGGAGGAGAACGAGCGTC
>site_7
ATACTCAACCGCCACTGCGGCGAC
>site_8
CGACTACTCACTAAACTCAGCAGT
>site_9
TCACTATCAAATTTGCTTTGCGCT
>site_10
ACACTGCAGGCGGGCGTCAGCGGT
>site_11
AGACTGACATTCCCGGTGCGCGAC
>site_12
CAAGTAGAGCGGTCGTAGGGCGGT
>site_13
GAACTGGCGGTCAGCTGAAGCGTA
>site_14
GCACTTCAATGAGATCTTGGCGCA
>site_15
TGACTCGGTGGCTGCGGCGGCGCC
>site_16
GGACTCTCCCTGCGCCAGAGCGGA
>site_17
CGACTGCAGCACATCTTCAGCGCA
>site_18
GCACTTTCCCCGATTTTATGCGTT
>site_19
GGACTTGTTAAGACCTGTAGCGAT
>site_20
CAACTAACGGAACAAAAATGCGCA
>site_21
AGACTTCCGATAACATTGAGTGTA
>site_22
CTACTATCGTCGGCCGCGAGCGTG
>site_23
GCACTGCATCGATGAAAGGGCGAT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m4_rc.png
;
a	25	23	41	1	46	1	1	1	16	11	10
c	7	10	6	45	1	0	47	2	3	11	6
g	8	7	2	1	1	1	1	45	29	8	14
t	9	9	0	2	1	47	0	1	1	19	19
//
; Sites	49
>site_0
GCACAGCGGTC
>site_1
CGACATCCGAT
>site_2
GGACATCGGAT
>site_3
AAACATCGCTG
>site_4
ACACAACGGTA
>site_5
AAACATCGATT
>site_6
CCACTTCGGCG
>site_7
GGGCATCGGTT
>site_8
CGCCATCGGTC
>site_9
CTACATCGACA
>site_10
TTACATCTGGT
>site_11
ATACATCCGCT
>site_12
ATACATCGGAT
>site_13
CCCCATCGGAC
>site_14
AAACATCGATG
>site_15
CCAGATCGGAA
>site_16
TCACGTCGGGG
>site_17
AAACATCGGAT
>site_18
ATACATCGTCG
>site_19
AAACATCGATT
>site_20
AAACATCGATG
>site_21
TAACATAGGGC
>site_22
GCACATCAGGG
>site_23
TAACATCGAAT
>site_24
GAACATCGAGC
>site_25
GACCATCGGTG
>site_26
ATACATGGGGT
>site_27
CCATATCGGTT
>site_28
TAATATCGGCT
>site_29
AAACATCGATG
>site_30
ATACATCGATA
>site_31
AACCATCGGCT
>site_32
TAAAATCGGGG
>site_33
AAACCTCGGAA
>site_34
AAACATCGGCG
>site_35
ATACATCGACT
>site_36
AGCCATCGGGA
>site_37
GAACATCGAAA
>site_38
TAACATCGGTG
>site_39
ATACATCGATA
>site_40
GGGCATCGGTT
>site_41
AACCATCGGCT
>site_42
AAACATCGAAT
>site_43
ACACATCGGCT
>site_44
TGACATCGATA
>site_45
AAACATCGAAA
>site_46
ACACATCGCCC
>site_47
AAACATCGCTG
>site_48
TAACATCGATG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m5_rc.png
;
a	11	9	3	2	1	24	11	10	6	2	2	7	13	11
c	12	14	35	38	36	8	15	16	15	38	36	34	12	10
g	6	10	0	0	2	3	5	10	9	0	0	0	6	11
t	12	8	3	1	2	6	10	5	11	1	3	0	10	9
//
; Sites	41
>site_0
CCCCCACACCACTT
>site_1
TCCCCCACACCACT
>site_2
CTCCCCCACACCAC
>site_3
ACCCCTCCCCCACA
>site_4
CACCCCTCCCCCAC
>site_5
CCACCACTTCCCAT
>site_6
AGCCCAAACCCCGA
>site_7
TTCCTCTCACCCCA
>site_8
TCCTCTCACCCCAC
>site_9
CACCCCACTCTCTT
>site_10
CTCCCTGACCCAGA
>site_11
CCTCCCTGACCCAG
>site_12
AACCCTCCTCCCTG
>site_13
GCCCCAACCCTCCT
>site_14
GCCCCAGCCCCAAC
>site_15
AGCCCCAGCCCCAA
>site_16
GTCCCAGATCTCCT
>site_17
TGCCCAAGTTCCTC
>site_18
ATCCCACGCCACCG
>site_19
GACCCTCTGACCAA
>site_20
TGCCCGCCGCCCTG
>site_21
GCCCCATCACCAAG
>site_22
TCACCAAGTCCCGG
>site_23
GTTCCAGATCCCGC
>site_24
ACCCAACACCCCAT
>site_25
TACCCAACACCCCA
>site_26
CTCCCAGGGCCCCG
>site_27
CACCCCTGGCCCGG
>site_28
AGCCCGCCTCCCTG
>site_29
TGCCCAAATCCCAC
>site_30
AGCCCATCCCCATC
>site_31
ACCACACAGCCCAT
>site_32
CGCCCGCCGCCCAC
>site_33
CGCCCACGGCCCCG
>site_34
CGTCCACGCCCCCG
>site_35
TCCCGTATTCCCTC
>site_36
TTCCCAACACCATA
>site_37
TCACCATTTCCCTT
>site_38
TACCTATTGCCCCA
>site_39
AACCGATGCCCCGA
>site_40
AACACATCGCCCCA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m6_rc.png
;
a	5	2	3	0	2	9	1	11	0	1	11	1	0	0	10	1	7	0	1	8	3	0	3	6
c	1	4	2	11	0	2	0	1	5	0	0	1	12	0	0	1	1	5	2	0	0	9	0	0
g	2	4	0	0	10	0	0	0	7	0	1	0	0	12	1	1	1	6	2	0	3	0	8	1
t	4	2	7	1	0	1	11	0	0	11	0	10	0	0	1	9	3	1	7	4	6	3	1	5
//
; Sites	12
>site_0
ACTCGATAGAGCCGATAGTATCGA
>site_1
ACTCGATACTATCGGCTCTATCGA
>site_2
AGCCGATAGTATCGAGTGCAATTA
>site_3
TTCCAATAGTATCGATTGCTTTGT
>site_4
CGATGCTACTATCGATAGTATCGA
>site_5
GTTCGATACTATCGATAGTAGCAT
>site_6
TATCGATAGTATCGAACCGTGCAT
>site_7
GCACGATAGTATCGATACGTACGA
>site_8
ACTCGTACGTATCGATACTATCGT
>site_9
AGTCGATACTATCGATGTATACAG
>site_10
TGACACTACTATCGTTACTATCGA
>site_11
TATCGATAGTAACGATAGTAGTGT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m7_rc.png
;
a	4	8	0	0	30	0	0	30	7	4
c	11	4	0	30	0	0	30	0	6	10
g	9	7	30	0	0	30	0	0	13	10
t	6	11	0	0	0	0	0	0	4	6
//
; Sites	30
>site_0
GTGCAGCATG
>site_1
CAGCAGCAAA
>site_2
GGGCAGCAGC
>site_3
CAGCAGCAAC
>site_4
ATGCAGCAGG
>site_5
ACGCAGCATC
>site_6
ATGCAGCACT
>site_7
TCGCAGCAGT
>site_8
GCGCAGCAAG
>site_9
GTGCAGCAGG
>site_10
CTGCAGCACG
>site_11
CTGCAGCACC
>site_12
TGGCAGCAGA
>site_13
CAGCAGCAGC
>site_14
CAGCAGCAGC
>site_15
CAGCAGCAGC
>site_16
CAGCAGCAGG
>site_17
GGGCAGCAGT
>site_18
GTGCAGCAAG
>site_19
CTGCAGCAGG
>site_20
GGGCAGCAGT
>site_21
CAGCAGCAGG
>site_22
TCGCAGCATG
>site_23
CTGCAGCACA
>site_24
TGGCAGCATC
>site_25
TGGCAGCACA
>site_26
GTGCAGCAAT
>site_27
GTGCAGCAAT
>site_28
TGGCAGCACC
>site_29
AAGCAGCAAC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m8_rc.png
;
a	11	9	0	23	23	9	9	6	9	4	8	22	23	23	11	9
c	3	5	0	0	0	1	1	8	2	7	6	0	0	0	3	5
g	2	2	0	0	0	4	8	3	5	5	5	0	0	0	4	2
t	7	7	23	0	0	9	5	6	7	7	4	1	0	0	5	7
//
; Sites	23
>site_0
CATAATTGCCTAAAAA
>site_1
TGTAAGTAGTGTAAGT
>site_2
TATAATGCCTGAAACC
>site_3
ACTAAATATCGAAACT
>site_4
ACTAATATAGAAAAAG
>site_5
GCTAAAGCAAAAAAGA
>site_6
ACTAAAGCTCAAAAAC
>site_7
AATAAAGTTTTAAACA
>site_8
AATAAGCTGGCAAATA
>site_9
TTTAATACATGAAAAT
>site_10
TTTAATAAATAAAAGT
>site_11
AATAATGAAAAAAAAA
>site_12
TTTAAGATTTCAAAAA
>site_13
CTTAAAAATGTAAATG
>site_14
AATAATATTTCAAATC
>site_15
AATAAATTAGCAAAAT
>site_16
ATTAATAGTGAAAAGT
>site_17
GATAAAGCGATAAAAT
>site_18
TTTAAAACGCAAAAAC
>site_19
AATAAGGAGCGAAAAC
>site_20
ACTAACGGAACAAAAA
>site_21
TTTAAATCACAAAATA
>site_22
CGTAATACACCAAATA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m9_rc.png
;
a	2	2	0	0	0	0	22	0	11	3
c	3	6	22	0	2	21	0	22	3	7
g	10	11	0	0	20	1	0	0	4	4
t	7	3	0	22	0	0	0	0	4	8
//
; Sites	22
>site_0
GGCTGCACCC
>site_1
GCCTGCACAT
>site_2
TGCTGCACAT
>site_3
GACTGCACTC
>site_4
CCCTCCACGT
>site_5
GTCTGCACGC
>site_6
GTCTGGACAC
>site_7
TGCTGCACAA
>site_8
ACCTGCACAT
>site_9
CGCTGCACAA
>site_10
TTCTGCACAC
>site_11
CACTGCACAT
>site_12
TGCTGCACTC
>site_13
AGCTGCACCA
>site_14
GCCTGCACCT
>site_15
TCCTCCACTG
>site_16
GGCTGCACAT
>site_17
GGCTGCACAT
>site_18
GCCTGCACGG
>site_19
GGCTGCACAC
>site_20
TGCTGCACTG
>site_21
TGCTGCACGG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m10_rc.png
;
; Host name	rsat
; Job started	2025-04-28.203758
; Job done	2025-04-28.203802
; Seconds	0.19
;	user	0.19
;	system	0.06
;	cuser	2.49
;	csystem	0.44
