; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	4	4	0	4	13	5	16	2	6	19	1	0	1	19	1	13	0	1	16	3	0	2	10	7
c	5	6	17	2	6	0	3	15	3	1	2	20	1	0	1	0	5	2	1	0	16	3	2	6
g	6	2	3	16	0	1	2	5	0	1	0	1	20	2	1	3	15	3	0	6	2	17	6	5
t	7	10	2	0	3	16	1	0	13	1	19	1	0	1	19	6	2	16	5	13	4	0	4	4
//
; Sites	22
>site_0
CTCGATAGAGCCGATAGTATCGAG
>site_1
CTCGATACTATCGGCTCTATCGAG
>site_2
AACAAAGCAATCGATACTATTGGA
>site_3
TCCAATAGTATCGATTGCTTTGTT
>site_4
TCCGCTCCTATCCGATGTATCGGA
>site_5
TCCGATACATCGGATAGGAGCGGA
>site_6
GATGCTACTATCGATAGTATCGAA
>site_7
TTCGATACTATCGATAGTAGCATC
>site_8
CACGATAGTATCGATACGTACGAG
>site_9
CTCGTACGTATCGATACTATCGTG
>site_10
GTGAATACAATCGATGGTTGCGGG
>site_11
CCCGCAACCATCGATTGTATTCAC
>site_12
TCTGTATACATCGATAGTATCGAC
>site_13
GTCGATACTATCGATGTATACAGA
>site_14
TCCGATAACATTGAGTGTATCGCA
>site_15
TGCGATACACTCAATGTTATCGGA
>site_16
GACACTACTATCGTTACTATCGAT
>site_17
ATCGATAGTAACGATAGTAGTGTC
>site_18
ATCGTTACTATCGATAGCTGGCAT
>site_19
ATGCCAGCTATCGATAGTAACGAT
>site_20
GGCGATACTATCGATTGGCGGCAC
>site_21
GTGCCGCCAATCGATAGTATCGCC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m1_rc.png
;
a	4	10	10	6	4	13	2	0	1	22	0	21	1	0	21	1	0	1	16	4	6
c	7	4	4	8	8	2	4	22	0	0	0	0	7	1	2	0	22	1	3	5	6
g	7	3	3	4	4	5	1	0	22	0	2	0	14	0	0	1	0	21	2	3	5
t	5	6	6	5	7	3	16	1	0	1	21	2	1	22	0	21	1	0	2	11	6
//
; Sites	23
>site_0
CAGCGGTCGATACTATCGATG
>site_1
GCGTCATCGATAGTATCGACC
>site_2
GCTGCCACGATAGTATCGGTC
>site_3
GAAACGCCGATAGTATCGAAT
>site_4
TTATATTCGATAATCTCGAAC
>site_5
ATAGAGCCGATAGTATCGAGT
>site_6
TCTATTCCAATAGTATCGATT
>site_7
ATACTATCGATAGTAGCATCG
>site_8
CTACTATCGATAGTATCGAAC
>site_9
CACGGTTCGATACTATCGATA
>site_10
GCACGCACGATAGTATCGATA
>site_11
TACGTATCGATACTATCGTGC
>site_12
CAACCATCGATTGTATTCACT
>site_13
TATACATCGATAGTATCGACT
>site_14
GGTTAGTCGATACTATCGATG
>site_15
ATAACATTGAGTGTATCGCAG
>site_16
TATTTATCGATAGTCTCGGTG
>site_17
AGCTCACCGAGACTATCGATA
>site_18
CTACTATCGTTACTATCGATA
>site_19
CAGCTATCGATAGTAACGATA
>site_20
GAAAGGGCGATACTATCGATT
>site_21
CGCCAATCGATAGTATCGCCC
>site_22
GATACATCGATATCATCGCGA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m2_rc.png
;
a	12	13	35	35	35	35	0	35	10	10
c	5	6	0	0	0	0	0	0	8	8
g	10	6	0	0	0	0	0	0	4	7
t	8	10	0	0	0	0	35	0	13	10
//
; Sites	35
>site_0
ATAAAATATA
>site_1
AAAAAATATT
>site_2
TAAAAATAGG
>site_3
GAAAAATAAA
>site_4
TAAAAATAAA
>site_5
GCAAAATAGG
>site_6
AGAAAATATA
>site_7
GGAAAATATA
>site_8
AGAAAATACT
>site_9
CCAAAATATT
>site_10
GCAAAATAAA
>site_11
TAAAAATAAT
>site_12
ATAAAATAAA
>site_13
GTAAAATACC
>site_14
CAAAAATATT
>site_15
CTAAAATATC
>site_16
AAAAAATACA
>site_17
GCAAAATAGT
>site_18
GAAAAATAAG
>site_19
ATAAAATATG
>site_20
TAAAAATAGT
>site_21
GTAAAATAAA
>site_22
TAAAAATACT
>site_23
AAAAAATATG
>site_24
AGAAAATACC
>site_25
ACAAAATATC
>site_26
ATAAAATAAG
>site_27
CGAAAATAAA
>site_28
CAAAAATACT
>site_29
ACAAAATATC
>site_30
TAAAAATACC
>site_31
TTAAAATACC
>site_32
TTAAAATATG
>site_33
GGAAAATATT
>site_34
GTAAAATAAC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/28/peak-motifs.2025-04-28.203737_2025-04-28.203737_n2namY/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m3_rc.png
;
; Host name	rsat
; Job started	2025-04-28.203745
; Job done	2025-04-28.203746
; Seconds	0.12
;	user	0.12
;	system	0.03
;	cuser	0.74
;	csystem	0.1
