RSAT - peak-motifs result

Analysis: test_astro_up (15/05/2025 22:10)

peak-motifs  -v 1 -title test_astro_up -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.220916_2025-05-15.220916_HlRG2E/peak-motifspeak_seq -max_seq_len 1000 -min_markov 1 -max_markov 1 -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_nematodes_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_nematodes_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.220916_2025-05-15.220916_HlRG2E

motif discovery
oligos_6nt_mkv1	oligos_6nt_mkv1_m1 assembly: ttattttaattaaaataaaa (sig=37.48; e-value=3.3e-38) RC: ttttattttaattaaaataa oligos_6nt_mkv1_m2 assembly: aaagaaaa (sig=18.33; e-value=4.7e-19) RC: ttttcttt oligos_6nt_mkv1_m3 assembly: ctcctccc (sig=17.09; e-value=8.1e-18) RC: gggaggag oligos_6nt_mkv1_m4 assembly: atataaataaaatat (sig=37.48; e-value=3.3e-38) RC: atattttatttatat oligos_6nt_mkv1_m5 assembly: aaaacacacagc (sig=15.05; e-value=8.9e-16) RC: gctgtgtgtttt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv1	oligos_7nt_mkv1_m1 assembly: aaaaataaaatata (sig=23.40; e-value=4e-24) RC: tatattttattttt oligos_7nt_mkv1_m2 assembly: tgactca (sig=15.89; e-value=1.3e-16) RC: tgagtca oligos_7nt_mkv1_m3 assembly: aaaaataaataataaaatat (sig=23.40; e-value=4e-24) RC: atattttattatttattttt oligos_7nt_mkv1_m4 assembly: ggccgggaag (sig=13.32; e-value=4.8e-14) RC: cttcccggcc oligos_7nt_mkv1_m5 assembly: acacacac (sig=10.85; e-value=1.4e-11) RC: gtgtgtgt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv1_m1	k-mer sig=37.48; evalue=3.3e-38 wwttATTTtAAttAAAATAAAAwr YWTTTTATTTTAATTAAAATAAWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwttATTTtAAttAAAATAAAAwr Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 72 (35.12%) Max nb of predicted sites per peak: 19  (chr20:45778255-45779970) Mean nb of predicted sites per peak: 3.68	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv1_m2	k-mer sig=18.33; evalue=4.7e-19 aaAAAGAAAAwa TWTTTTCTTTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAAAGAAAAwa blmp-1 MA0537.1 D 10 0.7692 0.726 0.559 NA NA fkh-9 MA1440.1 D 8 0.6667 0.750 0.500 NA NA let-381 MA2139.1 D 8 0.6667 0.701 0.467 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 83 (40.49%) Max nb of predicted sites per peak: 15  (chr3:194929659-194931337) Mean nb of predicted sites per peak: 2.81	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv1_m3	k-mer sig=17.09; evalue=8.1e-18 yyCtCCTCCCys SRGGGAGGAGRR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yyCtCCTCCCys klu-1 MA2137.1 D 7 0.5833 0.795 0.464 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 63 (30.73%) Max nb of predicted sites per peak: 9  (chr21:8212969-8213431) Mean nb of predicted sites per peak: 1.62	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv1_m4	k-mer sig=37.48; evalue=3.3e-38 wwawawAAATAAAATAwww WWWTATTTTATTTWTWTWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwawawAAATAAAATAwww Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 100 (48.78%) Max nb of predicted sites per peak: 17  (chr3:194929659-194931337) Mean nb of predicted sites per peak: 3.28	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv1_m5	k-mer sig=15.05; evalue=8.9e-16 ymaAaACACACAGccm KGGCTGTGTGTTTTKR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ymaAaACACACAGccm Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 50 (24.39%) Max nb of predicted sites per peak: 24  (chr1:182289636-182290661) Mean nb of predicted sites per peak: 2.78	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv1_m1	k-mer sig=23.40; evalue=4e-24 waAAAAAwAAAAwAwaww WWTWTWTTTTWTTTTTTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor waAAAAAwAAAAwAwaww Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 100 (48.78%) Max nb of predicted sites per peak: 28  (chr17:76790672-76792118) Mean nb of predicted sites per peak: 5.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv1_m2	k-mer sig=15.89; evalue=1.3e-16 rrTGACTCAyy RRTGAGTCAYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rrTGACTCAyy jun-1 MA2135.1 D 8 0.7273 0.968 0.704 NA NA fos-1 MA1448.1 D 7 0.6364 0.995 0.633 NA NA nhr-142 MA2142.1 R 7 0.5833 0.780 0.455 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 85 (41.46%) Max nb of predicted sites per peak: 4  (chr14:72476585-72477216) Mean nb of predicted sites per peak: 1.45	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv1_m3	k-mer sig=23.40; evalue=4e-24 waAAAAAwAAAwAAwAAAAwAwww WWWTWTTTTWTTWTTTWTTTTTTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor waAAAAAwAAAwAAwAAAAwAwww ceh-38 MA1699.2 D 14 0.5833 0.713 0.416 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 81 (39.51%) Max nb of predicted sites per peak: 35  (chr11:70251129-70252536) Mean nb of predicted sites per peak: 6.63	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv1_m4	k-mer sig=13.32; evalue=4.8e-14 ssGGCCGGGAAGsg CSCTTCCCGGCCSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssGGCCGGGAAGsg Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 59 (28.78%) Max nb of predicted sites per peak: 24  (chr21:8212969-8213431) Mean nb of predicted sites per peak: 2.88	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv1_m5	k-mer sig=10.85; evalue=1.4e-11 acACACACACac GTGTGTGTGTGT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor acACACACACac daf-12 MA0538.2 R 12 0.8571 0.879 0.753 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 40 (19.51%) Max nb of predicted sites per peak: 24  (chr1:182289636-182290661) Mean nb of predicted sites per peak: 4.58	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title test_astro_up -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.220916_2025-05-15.220916_HlRG2E/peak-motifspeak_seq -max_seq_len 1000 -min_markov 1 -max_markov 1 -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_nematodes_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_nematodes_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.220916_2025-05-15.220916_HlRG2E

Warning: Not a single pattern was found in file tmp/www-data/2025/05/15/peak-motifs.2025-05-15.220916_2025-05-15.220916_HlRG2E/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/05/15/peak-motifs.2025-05-15.220916_2025-05-15.220916_HlRG2E/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab