position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title astro_test -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 205 Sum of sequence lengths 178757 Min sequence length 0 Max sequence length 1000 Average sequence length 871 Possible positions 178757 Oligonucleotide statistics: Total occurrences 177054 Position interval parameters: Position interval 20 Number of windows 50 Total positions 178757 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 117 2227 2 -24 [-479,-460] -469.5 125 2436 3 -23 [-459,-440] -449.5 132 2550 4 -22 [-439,-420] -429.5 141 2730 5 -21 [-419,-400] -409.5 146 2859 6 -20 [-399,-380] -389.5 150 2965 7 -19 [-379,-360] -369.5 159 3101 8 -18 [-359,-340] -349.5 171 3296 9 -17 [-339,-320] -329.5 177 3465 10 -16 [-319,-300] -309.5 185 3641 11 -15 [-299,-280] -289.5 189 3732 12 -14 [-279,-260] -269.5 189 3780 13 -13 [-259,-240] -249.5 194 3838 14 -12 [-239,-220] -229.5 199 3939 15 -11 [-219,-200] -209.5 202 4021 16 -10 [-199,-180] -189.5 202 4040 17 -9 [-179,-160] -169.5 204 4064 18 -8 [-159,-140] -149.5 204 4080 19 -7 [-139,-120] -129.5 204 4080 20 -6 [-119,-100] -109.5 204 4080 21 -5 [-99,-80] -89.5 205 4100 22 -4 [-79,-60] -69.5 205 4100 23 -3 [-59,-40] -49.5 205 4100 24 -2 [-39,-20] -29.5 205 4100 25 -1 [-19,0] -9.5 205 4100 26 0 [1,20] 10.5 205 4100 27 1 [21,40] 30.5 205 4100 28 2 [41,60] 50.5 205 4100 29 3 [61,80] 70.5 205 4100 30 4 [81,100] 90.5 205 4100 31 5 [101,120] 110.5 204 4080 32 6 [121,140] 130.5 204 4080 33 7 [141,160] 150.5 204 4080 34 8 [161,180] 170.5 204 4062 35 9 [181,200] 190.5 202 4040 36 10 [201,220] 210.5 202 4017 37 11 [221,240] 230.5 199 3934 38 12 [241,260] 250.5 194 3833 39 13 [261,280] 270.5 189 3780 40 14 [281,300] 290.5 189 3726 41 15 [301,320] 310.5 185 3632 42 16 [321,340] 330.5 177 3461 43 17 [341,360] 350.5 171 3288 44 18 [361,380] 370.5 158 3091 45 19 [381,400] 390.5 150 2963 46 20 [401,420] 410.5 146 2855 47 21 [421,440] 430.5 140 2721 48 22 [441,460] 450.5 131 2545 49 23 [461,480] 470.5 125 2429 50 24 [481,500] 490.5 117 2216 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 45751 | 62.2 | 49 | 9.8e-02 | 0.39 | 0.41 | 1 | 547 | 608 | 618 | 649 | 701 | 777 | 803 | 842 | 896 | 937 | 924 | 924 | 964 | 1079 | 974 | 1039 | 1067 | 1044 | 1034 | 1065 | 1046 | 1070 | 1038 | 1043 | 1051 | 1118 | 1026 | 1042 | 1058 | 998 | 1019 | 1004 | 1014 | 1061 | 990 | 1074 | 1102 | 1002 | 1007 | 981 | 932 | 934 | 861 | 832 | 738 | 677 | 739 | 625 | 622 | 555 |
| g | g | 42766 | 60.8 | 49 | 1.2e-01 | 0.48 | 0.32 | 2 | 569 | 558 | 608 | 643 | 681 | 706 | 703 | 756 | 775 | 847 | 879 | 888 | 901 | 906 | 960 | 965 | 960 | 997 | 981 | 936 | 983 | 969 | 1006 | 979 | 933 | 979 | 1016 | 1010 | 978 | 958 | 1087 | 975 | 1050 | 981 | 1053 | 986 | 929 | 922 | 911 | 884 | 907 | 818 | 776 | 745 | 697 | 736 | 646 | 600 | 549 | 484 |
| c | c | 42744 | 50.8 | 49 | 4.0e-01 | 1.6 | -0.21 | 3 | 525 | 604 | 595 | 656 | 667 | 665 | 724 | 756 | 846 | 824 | 836 | 926 | 921 | 889 | 966 | 960 | 952 | 961 | 946 | 966 | 994 | 990 | 994 | 1019 | 1013 | 948 | 984 | 998 | 1049 | 1043 | 923 | 1009 | 927 | 983 | 966 | 950 | 948 | 938 | 907 | 915 | 851 | 818 | 790 | 739 | 704 | 702 | 617 | 651 | 609 | 580 |
| a | a | 45793 | 34.6 | 49 | 9.4e-01 | 3.8 | -0.58 | 4 | 566 | 628 | 669 | 731 | 762 | 755 | 813 | 885 | 859 | 903 | 998 | 977 | 988 | 1010 | 1064 | 1003 | 1012 | 1014 | 1054 | 1053 | 1037 | 1051 | 1060 | 1059 | 1103 | 1055 | 1074 | 1050 | 1009 | 1081 | 1033 | 1092 | 1089 | 1037 | 1031 | 1007 | 955 | 971 | 955 | 946 | 924 | 871 | 851 | 771 | 788 | 700 | 681 | 609 | 600 | 559 |
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