/var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title astro_test -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	205
	Sum of sequence lengths      	178757
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	871
	Possible positions           	178552
 Oligonucleotide statistics:
	Total occurrences    	176822
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	178552
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	117	2227
	2	-24	[-479,-460]	-469.5	125	2436
	3	-23	[-459,-440]	-449.5	132	2550
	4	-22	[-439,-420]	-429.5	141	2730
	5	-21	[-419,-400]	-409.5	146	2859
	6	-20	[-399,-380]	-389.5	150	2965
	7	-19	[-379,-360]	-369.5	159	3101
	8	-18	[-359,-340]	-349.5	171	3296
	9	-17	[-339,-320]	-329.5	177	3465
	10	-16	[-319,-300]	-309.5	185	3641
	11	-15	[-299,-280]	-289.5	189	3732
	12	-14	[-279,-260]	-269.5	189	3780
	13	-13	[-259,-240]	-249.5	194	3838
	14	-12	[-239,-220]	-229.5	199	3939
	15	-11	[-219,-200]	-209.5	202	4021
	16	-10	[-199,-180]	-189.5	202	4040
	17	-9	[-179,-160]	-169.5	204	4064
	18	-8	[-159,-140]	-149.5	204	4080
	19	-7	[-139,-120]	-129.5	204	4080
	20	-6	[-119,-100]	-109.5	204	4080
	21	-5	[-99,-80]	-89.5	205	4100
	22	-4	[-79,-60]	-69.5	205	4100
	23	-3	[-59,-40]	-49.5	205	4100
	24	-2	[-39,-20]	-29.5	205	4100
	25	-1	[-19,0]	-9.5	205	4100
	26	0	[1,20]	10.5	205	4100
	27	1	[21,40]	30.5	205	4100
	28	2	[41,60]	50.5	205	4100
	29	3	[61,80]	70.5	205	4100
	30	4	[81,100]	90.5	205	4099
	31	5	[101,120]	110.5	204	4080
	32	6	[121,140]	130.5	204	4080
	33	7	[141,160]	150.5	204	4080
	34	8	[161,180]	170.5	204	4060
	35	9	[181,200]	190.5	202	4040
	36	10	[201,220]	210.5	201	4014
	37	11	[221,240]	230.5	199	3929
	38	12	[241,260]	250.5	194	3828
	39	13	[261,280]	270.5	189	3780
	40	14	[281,300]	290.5	189	3722
	41	15	[301,320]	310.5	185	3624
	42	16	[321,340]	330.5	177	3455
	43	17	[341,360]	350.5	171	3275
	44	18	[361,380]	370.5	158	3083
	45	19	[381,400]	390.5	150	2959
	46	20	[401,420]	410.5	145	2849
	47	21	[421,440]	430.5	140	2712
	48	22	[441,460]	450.5	131	2539
	49	23	[461,480]	470.5	124	2421
	50	24	[481,500]	490.5	117	2099

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 13814 99.4 49 2.8e-05 0.00045 3.35 1 157 189 170 177 199 244 242 260 267 283 266 257 306 347 267 328 318 313 326 337 308 327 312 304 331 386 322 315 316 315 300 266 284 313 272 362 353 298 315 296 266 287 270 269 214 200 228 189 182 161
aa aa 13766 89.4 49 3.8e-04 0.006 2.22 2 148 175 186 223 222 215 245 270 251 243 297 321 292 309 346 284 293 309 328 339 300 334 330 303 366 337 330 304 281 339 301 352 331 278 311 322 276 321 298 289 261 243 254 251 277 184 181 174 194 148
cc cc 12454 88.9 49 4.2e-04 0.0067 2.17 3 154 163 165 189 182 187 195 218 252 246 243 284 288 259 284 273 269 256 286 296 300 289 300 302 308 260 292 302 340 341 252 285 239 272 265 286 279 272 273 281 227 247 220 213 211 208 140 195 184 182
gg gg 12642 69.8 49 2.7e-02 0.43 0.37 4 176 160 181 179 194 216 208 206 213 249 260 259 275 251 302 279 267 326 302 258 300 289 289 292 262 303 314 305 275 269 334 277 301 266 326 309 272 272 289 267 273 248 221 228 214 233 178 193 159 123
ca ca 13600 52.0 49 3.6e-01 5.7 -0.76 5 185 233 211 236 214 212 256 243 280 250 270 301 282 268 300 308 305 308 310 293 316 301 324 311 317 319 322 323 319 330 312 338 302 322 286 302 259 276 267 290 278 247 238 233 220 230 217 207 172 157
ta ta 7350 51.1 49 3.9e-01 6.3 -0.80 6 99 112 101 103 126 138 137 139 149 178 189 154 145 181 176 164 169 163 170 174 177 164 170 166 174 175 149 165 154 142 156 142 174 183 156 154 147 144 164 146 159 159 132 124 119 105 115 95 88 85
ga ga 11005 48.6 49 4.9e-01 7.9 -0.90 7 136 121 163 175 186 191 177 216 185 226 233 227 253 253 237 256 243 232 252 238 240 256 236 287 234 236 267 260 250 270 268 253 290 247 278 234 265 230 225 232 216 218 210 179 167 176 165 138 140 138
ag ag 13775 45.8 49 6.1e-01 9.7 -0.99 8 193 188 199 223 221 230 223 248 261 284 295 270 297 282 308 317 311 291 336 302 332 291 334 342 311 311 330 326 306 325 351 315 351 331 328 311 266 267 277 271 281 258 255 233 213 242 215 180 171 172
ct ct 13888 45.6 49 6.1e-01 9.8 -0.99 9 157 171 186 186 218 227 235 245 265 277 256 295 289 296 325 313 320 319 298 312 313 336 308 345 329 312 311 304 320 312 284 323 318 329 336 303 340 333 316 294 283 276 271 243 228 203 228 205 209 186
ac ac 8875 45.1 49 6.3e-01 10 -1.00 10 107 144 137 144 160 152 170 179 152 162 208 192 191 189 218 209 197 201 178 191 207 211 196 206 211 203 216 204 197 210 177 206 199 207 215 175 181 193 175 166 196 166 166 132 136 139 141 139 118 106
tc tc 10980 44.6 49 6.5e-01 10 -1.02 11 121 142 153 170 156 182 183 190 216 220 196 228 235 240 235 243 262 255 247 254 270 256 240 281 257 240 237 254 258 245 229 274 230 245 238 244 279 241 235 244 207 224 220 199 176 169 185 158 171 146
at at 9315 43.5 49 7.0e-01 11 -1.05 12 118 120 147 141 158 158 175 188 193 214 197 194 208 230 192 193 211 213 211 221 198 215 200 208 215 204 198 216 224 206 204 219 208 221 177 199 230 189 205 217 184 202 176 153 160 133 143 114 116 99
gt gt 8688 43.3 49 7.0e-01 11 -1.05 13 117 127 117 137 146 147 148 147 168 167 193 189 167 190 198 207 221 191 192 213 220 194 218 173 206 202 188 201 198 167 230 194 216 199 195 208 185 176 174 175 192 165 153 154 135 143 143 107 109 86
cg cg 2753 43.2 49 7.1e-01 11 -1.05 14 29 37 33 45 52 39 38 50 48 51 67 46 61 66 56 66 57 78 52 65 65 64 62 61 59 57 59 69 70 60 75 63 68 58 79 59 68 55 51 50 61 47 58 48 44 59 32 42 42 32
gc gc 10374 40.6 49 8.0e-01 13 -1.11 15 140 150 147 152 155 152 170 186 209 205 193 212 206 212 222 223 229 248 234 227 223 230 263 227 231 238 247 244 255 252 255 251 243 269 254 233 206 243 223 210 224 184 185 183 179 183 157 161 138 111
tg tg 13543 35.3 49 9.3e-01 15 -1.17 16 170 164 194 198 220 212 241 252 262 256 273 285 278 311 296 303 318 313 291 300 291 323 316 292 289 317 318 308 330 296 334 322 326 320 324 313 323 318 293 294 297 264 236 236 229 202 204 182 179 130 
 Host name	rsat
 Job started	2025-05-15.223840
 Job done	2025-05-15.223841
 Seconds	1.12
	user	1.12
	system	0.01
	cuser	0
;	csystem	0