; 2025-05-15.223836 peak-motifs -v 1 -title astro_test -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifspeak_seq -max_seq_len 1000 -disco positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz ; 2025-05-15.223836 rsync -ruptl $RSAT/perl-scripts/lib/images/arrow*.gif $RSAT/perl-scripts/lib/images/UCSC_icon.jpg $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/images_html ; 2025-05-15.223836 $RSAT/perl-scripts/convert-seq -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifspeak_seq -from fasta -to fasta -mask non-dna | $RSAT/perl-scripts/sub-sequence -origin center -from -500 -to 499 -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000.fasta ; 2025-05-15.223836 $RSAT/perl-scripts/purge-sequence -dna -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000.fasta -ml 40 -mis 3 -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta ; 2025-05-15.223836 $RSAT/perl-scripts/sequence-lengths -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_seqlen.tab ; $RSAT/perl-scripts/classfreq -v 1 -col 2 -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_seqlen.tab -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_seqlen_distrib.tab ; 2025-05-15.223837 $RSAT/perl-scripts/XYgraph -lines -pointsize 0 -format png -title 'Peak lengths; astro_test' -xsize 700 -xcol 3 -xleg1 'Peak length' -ysize 250 -ycol 4 -yleg1 'Number of peaks' -xmin 0 -ymin 0 -xgstep2 20 -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_seqlen_distrib.tab -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_seqlen_distrib.png ; 2025-05-15.223837 time -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab_time.txt $RSAT/bin/count-words -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -l 1 -1str -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab ; 2025-05-15.223837 $RSAT/perl-scripts/convert-background-model -from oligos -to inclusive -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt; $RSAT/perl-scripts/convert-background-model -from oligos -to transitions -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab ; cut -f 1-5,7 $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab | $RSAT/perl-scripts/draw-heatmap -min 0 -max 1 -digits 3 -out_format png -col_width 50 -rownames -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png ; 2025-05-15.223837 time -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab_time.txt $RSAT/bin/count-words -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -l 2 -1str -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab ; 2025-05-15.223837 $RSAT/perl-scripts/convert-background-model -from oligos -to inclusive -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt; $RSAT/perl-scripts/convert-background-model -from oligos -to transitions -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab ; cut -f 1-5,7 $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab | $RSAT/perl-scripts/draw-heatmap -min 0 -max 1 -digits 3 -out_format png -col_width 50 -rownames -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png ; 2025-05-15.223838 time -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab_time.txt $RSAT/perl-scripts/position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 'astro_test' -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab ; 2025-05-15.223839 grep -v ";" $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab | cut -f 1,10-10000 | $RSAT/perl-scripts/transpose-table | $RSAT/perl-scripts/XYgraph -xcol 1 -ycol 2-5 -xgstep2 20 -vline '#666666' 0 -xsize 700 -ysize 250 -format png -legend -lines -pointsize 0 -legend -header -colors $RSAT/perl-scripts/lib/color_palettes/1nt-1str_colors.tab -title 'Nucleotide composition profiles; test sequence; astro_test' -xleg1 'Position' -xsize 700 -yleg1 'Occurrences' -ysize 250 -ymin 0 -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png ; 2025-05-15.223839 time -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab_time.txt $RSAT/perl-scripts/position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title 'astro_test' -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab ; 2025-05-15.223843 grep -v ";" $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab | cut -f 1,10-10000 | $RSAT/perl-scripts/transpose-table | $RSAT/perl-scripts/XYgraph -xcol 1 -ycol 2-17 -xgstep2 20 -vline '#666666' 0 -xsize 700 -ysize 250 -format png -legend -lines -pointsize 0 -legend -header -colors $RSAT/perl-scripts/lib/color_palettes/2nt-1str_colors.tab -title 'Dinucleotide composition profiles; test sequence; astro_test' -xleg1 'Position' -xsize 700 -yleg1 'Occurrences' -ysize 250 -ymin 0 -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png ; 2025-05-15.223843 time -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab_time.txt $RSAT/perl-scripts/position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return chi,sig,rank,distrib,index -max_graphs 100 -2str -noov -seqtype dna -l 6 -ci 50 -lth_occ 1 -lth_sig 0 -uth_rank 100 -img_format png -title 'astro_test' -origin center -offset 0 -max_graphs 20 -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab ; 2025-05-15.223846 time -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_time.txt $RSAT/perl-scripts/matrix-from-patterns -v 1 -sites -seq $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000.fasta -pl $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab -bgfile $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -toppat 100 -max_asmb_nb 5 -max_asmb_width 20 -subst 1 -prefix positions_6nt -flanks 2 -collect_method matrix-scan-quick -logo -cluster none -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm ; 2025-05-15.223846 time -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab_time.txt $RSAT/perl-scripts/position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return chi,sig,rank,distrib,index -max_graphs 100 -2str -noov -seqtype dna -l 7 -ci 50 -lth_occ 1 -lth_sig 0 -uth_rank 100 -img_format png -title 'astro_test' -origin center -offset 0 -max_graphs 20 -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab ; 2025-05-15.223853 time -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_time.txt $RSAT/perl-scripts/matrix-from-patterns -v 1 -sites -seq $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000.fasta -pl $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab -bgfile $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -toppat 100 -max_asmb_nb 5 -max_asmb_width 20 -subst 1 -prefix positions_7nt -flanks 2 -collect_method matrix-scan-quick -logo -cluster none -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm ; 2025-05-15.223853 rm -f $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_discovered.tf ; 2025-05-15.223853 $RSAT/perl-scripts/compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab; $RSAT/perl-scripts/text-to-html -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa.html ; 2025-05-15.223853 $RSAT/perl-scripts/convert-graph -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab -ewidth -ecolors fire -layout spring -from tab -to gml -scol 3 -tcol 4 -wcol 5 -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa.gml ; 2025-05-15.223853 $RSAT/perl-scripts/text-to-html -font variable -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/reports/peak-motifs_timelog.txt -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/reports/peak-motifs_timelog.html ; peak-motifs -v 1 -title astro_test -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifspeak_seq -max_seq_len 1000 -disco positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz ; Program version 1.256 ; Parameter values ; seq_format fasta ; img_format png ; ref_motifs_format transfac ; purge_match_length 40 ; purge_mismatches 3 ; origin center ; offset 0 ; profiles_ci 20 ; profiles_max_graphs 20 ; profiles_strand -1str ; composition_oligo_lengths 1,2 ; profiles_noov -ovlp ; strand -2str ; disco_noov -noov ; oligo_min_len 6 ; oligo_max_len 7 ; patterns_max_rank 100 ; min_ratio 1 ; min_zscore 6 ; min_sig 0 ; oligo_min_mkv -2 ; oligo_max_mkv -2 ; under_represented 0 ; positions_max_graphs 20 ; asmb_toppat 100 ; max_asmb_width 20 ; matrix_nmotifs 5 ; Input files ; motif_db_JASPAR2024_CORE_vertebrates_non-redundant /var/www/html/rsat/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt ; test_seq /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifspeak_seq ; Directories ; output /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/ ; Output files ; 1nt_test_freq /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab ; 1nt_test_heatmap /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png ; 1nt_test_inclusive /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt ; 1nt_test_profiles /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab ; 1nt_test_profiles_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png ; 1nt_test_profiles_index /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_graph_index.html ; 1nt_test_transitions /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab ; 2nt_test_freq /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab ; 2nt_test_heatmap /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png ; 2nt_test_inclusive /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt ; 2nt_test_profiles /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab ; 2nt_test_profiles_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png ; 2nt_test_profiles_index /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20_graph_index.html ; 2nt_test_transitions /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab ; archive /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifs_archive.zip ; links /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/reports/peak-motifs_links.html ; log /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/reports/peak-motifs_log.txt ; merged_sites /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/sites/peak-motifs_all_motifs_seqcoord.tab ; merged_sites_bed /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/sites/peak-motifs_all_motifs_seqcoord.bed ; merged_words /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/merged_words/peak-motifs_merged_words.tab ; merged_words_heatmap /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/merged_words/peak-motifs_merged_words_heatmap.png ; merged_words_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/merged_words/peak-motifs_merged_words.html ; motifs_disco_clusters /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_discovered_clusters ; motifs_disco_clusters_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_discovered_clusters_SUMMARY.html ; motifs_disco_compa /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab ; motifs_disco_compa_alignments_1ton /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab ; motifs_disco_compa_alignments_1ton_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html ; motifs_disco_compa_gml /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa.gml ; motifs_disco_compa_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa.html ; motifs_discovered /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_discovered.tf ; motifs_discovered_table /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_discovered_table.tab ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_gml /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.gml ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html ; positions_6nt /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab ; positions_6nt_2pssm /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_log.txt ; positions_6nt_asmb /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm.asmb ; positions_6nt_pssm_counts /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices.txt ; positions_6nt_pssm_logo1 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m1.png ; positions_6nt_pssm_logo2 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m2.png ; positions_6nt_pssm_logo3 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m3.png ; positions_6nt_pssm_logo4 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m4.png ; positions_6nt_pssm_logo5 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m5.png ; positions_6nt_pssm_logo_rc1 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m1_rc.png ; positions_6nt_pssm_logo_rc2 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m2_rc.png ; positions_6nt_pssm_logo_rc3 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m3_rc.png ; positions_6nt_pssm_logo_rc4 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m4_rc.png ; positions_6nt_pssm_logo_rc5 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m5_rc.png ; positions_6nt_pssm_sig /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_sig_matrices.tf ; positions_6nt_pssm_tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices.tf ; positions_7nt /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab ; positions_7nt_2pssm /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_log.txt ; positions_7nt_asmb /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm.asmb ; positions_7nt_pssm_counts /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices.txt ; positions_7nt_pssm_logo1 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m1.png ; positions_7nt_pssm_logo2 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m2.png ; positions_7nt_pssm_logo3 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m3.png ; positions_7nt_pssm_logo4 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m4.png ; positions_7nt_pssm_logo5 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m5.png ; positions_7nt_pssm_logo_rc1 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m1_rc.png ; positions_7nt_pssm_logo_rc2 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m2_rc.png ; positions_7nt_pssm_logo_rc3 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m3_rc.png ; positions_7nt_pssm_logo_rc4 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m4_rc.png ; positions_7nt_pssm_logo_rc5 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices_logo_m5_rc.png ; positions_7nt_pssm_sig /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_sig_matrices.tf ; positions_7nt_pssm_tf /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50_pssm_count_matrices.tf ; small_summary /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifs_small_summary.html ; small_summary_txt /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/reports/peak-motifs_small_summary.txt ; synthesis /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifs_synthesis.html ; test_converted /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000.fasta ; test_purged /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta ; test_seqlen /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_seqlen.tab ; test_seqlen_distrib /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_seqlen_distrib.tab ; test_seqlen_distrib_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/data/sequences/peak-motifs_test_seqlen_distrib.png ; timelog /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/reports/peak-motifs_timelog.txt ; timelog_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/reports/peak-motifs_timelog.html ; timetable /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/reports/peak-motifs_timetable.txt ; 2025-05-15.223853 (cd $RSAT/public_html/tmp/www-data/2025/05/15 ; zip -ryq peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifs_archive.zip peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz -x peak-motifs_archive.zip) ; 2025-05-15.223854 rsync -ruptl $RSAT/perl-scripts/lib/images/arrow*.gif $RSAT/perl-scripts/lib/images/UCSC_icon.jpg $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/images_html ; peak-motifs -v 1 -title astro_test -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifspeak_seq -max_seq_len 1000 -disco positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz ; Program version 1.256 ; Parameter values ; seq_format fasta ; img_format png ; ref_motifs_format transfac ; purge_match_length 40 ; purge_mismatches 3 ; origin center ; offset 0 ; profiles_ci 20 ; profiles_max_graphs 20 ; profiles_strand -1str ; composition_oligo_lengths 1,2 ; profiles_noov -ovlp ; strand -2str ; disco_noov -noov ; oligo_min_len 6 ; oligo_max_len 7 ; patterns_max_rank 100 ; min_ratio 1 ; min_zscore 6 ; min_sig 0 ; oligo_min_mkv -2 ; oligo_max_mkv -2 ; under_represented 0 ; positions_max_graphs 20 ; asmb_toppat 100 ; max_asmb_width 20 ; matrix_nmotifs 5 ; Input files ; motif_db_JASPAR2024_CORE_vertebrates_non-redundant /var/www/html/rsat/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt ; test_seq /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifspeak_seq ; Directories ; output /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/ ; Output files ; 1nt_test_freq /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab ; 1nt_test_heatmap /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png ; 1nt_test_inclusive /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt ; 1nt_test_profiles /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab ; 1nt_test_profiles_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png ; 1nt_test_profiles_index /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_graph_index.html ; 1nt_test_transitions /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab ; 2nt_test_freq /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab ; 2nt_test_heatmap /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png ; 2nt_test_inclusive /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt ; 2nt_test_profiles /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab ; 2nt_test_profiles_graph /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png ; 2nt_test_profiles_index /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20_graph_index.html ; 2nt_test_transitions /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab ; archive /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifs_archive.zip ; links /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/reports/peak-motifs_links.html ; log /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/reports/peak-motifs_log.txt ; merged_sites /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/sites/peak-motifs_all_motifs_seqcoord.tab ; merged_sites_bed /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/sites/peak-motifs_all_motifs_seqcoord.bed ; merged_words /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/merged_words/peak-motifs_merged_words.tab ; merged_words_heatmap /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/merged_words/peak-motifs_merged_words_heatmap.png ; merged_words_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/merged_words/peak-motifs_merged_words.html ; motifs_disco_clusters /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_discovered_clusters ; motifs_disco_clusters_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_discovered_clusters_SUMMARY.html ; motifs_disco_compa /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab ; motifs_disco_compa_alignments_1ton /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab ; motifs_disco_compa_alignments_1ton_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html ; motifs_disco_compa_gml /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa.gml ; motifs_disco_compa_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_disco_compa.html ; motifs_discovered /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_discovered.tf ; motifs_discovered_table /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_motifs/peak-motifs_motifs_discovered_table.tab ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_gml /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.gml ; motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html ; positions_6nt /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab ; positions_6nt_2pssm /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_log.txt ; positions_6nt_asmb /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm.asmb ; positions_6nt_pssm_counts /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices.txt ; positions_6nt_pssm_logo1 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m1.png ; positions_6nt_pssm_logo2 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m2.png ; positions_6nt_pssm_logo3 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m3.png ; positions_6nt_pssm_logo4 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m4.png ; positions_6nt_pssm_logo5 /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices_logo_m5.png ; 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timelog /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/reports/peak-motifs_timelog.txt ; timelog_html /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/reports/peak-motifs_timelog.html ; timetable /var/www/html/rsat/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/reports/peak-motifs_timetable.txt ; 2025-05-15.223854 (cd $RSAT/public_html/tmp/www-data/2025/05/15 ; zip -ryq peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifs_archive.zip peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifs_synthesis.html -x peak-motifs_archive.zip) ; 2025-05-15.223854 $RSAT/perl-scripts/text-to-html -i $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/reports/peak-motifs_small_summary.txt -no_sort -o $RSAT/public_html/tmp/www-data/2025/05/15/peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifs_small_summary.html ; 2025-05-15.223854 (cd $RSAT/public_html/tmp/www-data/2025/05/15 ; zip -ryq peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifs_archive.zip peak-motifs.2025-05-15.223835_2025-05-15.223835_QmzWfz/peak-motifs_small_summary.html -x peak-motifs_archive.zip) ; Host name rsat ; Job started 2025-05-15.223836 ; Job done 2025-05-15.223854 ; Seconds 0.17 ; user 0.17 ; system 0.11 ; cuser 16.9 ; csystem 1.23