peak-motifs Astrocytes_control_MDD_ATAC_DE

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=7.09; evalue=8.1e-08

kmTGACTCAGcv

BGCTGAGTCAKM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kmTGACTCAGcv

Mafg MA0659.4 D 12 1.0000 0.892 0.892 NA NA

Bach1::Mafk MA0591.2 D 12 1.0000 0.881 0.881 NA NA

MAFG::NFE2L1 MA0089.3 D 11 0.9167 0.880 0.807 NA NA

Total matches= 35 (32 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 75 (36.59%)
Max nb of predicted sites per peak: 4
(chr22:22396640-22398556)
Mean nb of predicted sites per peak: 1.47

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=4.39; evalue=4.1e-05

wsTAATTAsw

WSTAATTASW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wsTAATTAsw

Lhx1 MA1518.3 R 10 1.0000 0.911 0.911 NA NA

LHX6 MA0658.2 R 8 0.8000 0.958 0.766 NA NA

Alx1 MA0854.2 D 8 0.8000 0.951 0.761 NA NA

Total matches= 105 (102 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 59 (28.78%)
Max nb of predicted sites per peak: 8
(chr19:38665847-38668163)
Mean nb of predicted sites per peak: 2.49

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=3.15; evalue=0.00071

ssCGCCGCss

SSGCGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCGCCGCss

ZNF610 MA1713.2 D 9 0.8182 0.795 0.650 NA NA

KLF12 MA0742.2 R 8 0.7273 0.725 0.527 NA NA

SP2 MA0516.3 R 8 0.7273 0.716 0.521 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 22 (10.73%)
Max nb of predicted sites per peak: 40
(chr17:78358810-78361046)
Mean nb of predicted sites per peak: 6.68

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=2.74; evalue=0.0018

cyCCTCCCys

SRGGGAGGRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyCCTCCCys

ZNF148 MA1653.2 D 10 1.0000 0.859 0.859 NA NA

ZNF281 MA1630.3 R 10 1.0000 0.785 0.785 NA NA

SP4 MA0685.2 R 9 0.9000 0.813 0.732 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 48 (23.41%)
Max nb of predicted sites per peak: 6
(chr17:78358810-78361046)
Mean nb of predicted sites per peak: 1.52

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=2.58; evalue=0.0026

srCTTGGCws

SWGCCAAGYS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor srCTTGGCws

NFIC MA0161.3 D 7 0.7000 0.938 0.657 NA NA

ZNF416 MA1979.2 D 9 0.8182 0.722 0.591 NA NA

NFIX MA0671.2 R 6 0.6000 0.959 0.575 NA NA

Total matches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 56 (27.32%)
Max nb of predicted sites per peak: 3
(chr15:78671512-78673908)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_mkv4_m1

k-mer sig=4.92; evalue=1.2e-05

rrTGACTCAty

RATGAGTCAYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrTGACTCAty

BACH2 MA1101.3 D 11 1.0000 0.887 0.887 NA NA

FOSL2 MA0478.2 D 10 0.9091 0.961 0.874 NA NA

NFE2 MA0841.2 D 10 0.9091 0.919 0.836 NA NA

Total matches= 35 (32 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 77 (37.56%)
Max nb of predicted sites per peak: 4
(chr14:72476585-72477216)
Mean nb of predicted sites per peak: 1.48

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_mkv4_m2

k-mer sig=2.71; evalue=0.0019

csCCCCCACCcc

GGGGTGGGGGSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor csCCCCCACCcc

ZNF740 MA0753.3 D 10 0.8333 0.789 0.657 NA NA

KLF5 MA0599.1 D 10 0.8333 0.788 0.656 NA NA

PATZ1 MA1961.2 R 10 0.7692 0.852 0.655 NA NA

Total matches= 28 (25 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 58 (28.29%)
Max nb of predicted sites per peak: 8
(chr21:8212969-8213431)
Mean nb of predicted sites per peak: 1.97

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv4_m3

k-mer sig=1.08; evalue=0.083

ybCCCCTCCcs

SGGGAGGGGVR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ybCCCCTCCcs

KLF5 MA0599.1 D 10 0.9091 0.851 0.774 NA NA

PATZ1 MA1961.2 R 10 0.8333 0.908 0.757 NA NA

ZNF148 MA1653.2 D 9 0.7500 0.965 0.724 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 56 (27.32%)
Max nb of predicted sites per peak: 12
(chr17:78358810-78361046)
Mean nb of predicted sites per peak: 1.91

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv4_m4

k-mer sig=0.77; evalue=0.17

rwAAGAAAAya

TRTTTTCTTWY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rwAAGAAAAya

ZNF677 MA2101.1 D 11 0.9167 0.735 0.674 NA NA

HOXB13 MA0901.3 D 9 0.8182 0.733 0.600 NA NA

ZNF384 MA1125.2 D 8 0.7273 0.765 0.556 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 68 (33.17%)
Max nb of predicted sites per peak: 4
(chr12:116455126-116456397)
Mean nb of predicted sites per peak: 1.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv4_m5

k-mer sig=0.64; evalue=0.23

ssCGCCGCGss

SSCGCGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCGCCGCGss

ZBED4 MA2328.1 D 10 0.9091 0.742 0.674 NA NA

ZNF610 MA1713.2 D 10 0.9091 0.716 0.651 NA NA

KLF12 MA0742.2 R 8 0.6667 0.721 0.481 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 28 (13.66%)
Max nb of predicted sites per peak: 54
(chr17:78358810-78361046)
Mean nb of predicted sites per peak: 7.64

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: Astrocytes_control_MDD_ATAC_DE_up (16/05/2025 17:05)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results