RSAT - peak-motifs result

Analysis: Exc_L3-4_RORB_CUX2_control_MDD_up (16/05/2025 17:39)

peak-motifs  -v 1 -title Exc_L3-4_RORB_CUX2_control_MDD_up -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.173849_2025-05-16.173849_eNzOUW/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 2 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.173849_2025-05-16.173849_eNzOUW

Command:  peak-motifs  -v 1 -title Exc_L3-4_RORB_CUX2_control_MDD_up -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.173849_2025-05-16.173849_eNzOUW/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 2 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.173849_2025-05-16.173849_eNzOUW

Warning: Not a single pattern was found in file tmp/www-data/2025/05/16/peak-motifs.2025-05-16.173849_2025-05-16.173849_eNzOUW/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1.tab

Error: Cannot scale matrix with only null values
Error occurred on RSAT site: rsat; host server: rsat; admin: compbio@eead.csic.es

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.173849_2025-05-16.173849_eNzOUW/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_sig_matrices_rescaled.tf

Warning: Input file contained not a single matrix

Error: OpenInputFile: File tmp/www-data/2025/05/16/peak-motifs.2025-05-16.173849_2025-05-16.173849_eNzOUW/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_sig_sites.ft does not exist.
Error occurred on RSAT site: rsat; host server: rsat; admin: compbio@eead.csic.es

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.173849_2025-05-16.173849_eNzOUW/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf

Warning: Input file contained not a single matrix

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.173849_2025-05-16.173849_eNzOUW/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf

Warning: Input file contained not a single matrix

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.173849_2025-05-16.173849_eNzOUW/results/discovered_motifs/peak-motifs_motifs_discovered.tf

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.173849_2025-05-16.173849_eNzOUW/results/discovered_motifs/peak-motifs_motifs_discovered.tf

Warning: Not a single discovered motif. Reducing the order of the Markov model may increase sensitivity.