; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	1	4	0	0	3	0	0	0	0	3	0
c	9	5	12	11	1	13	1	13	12	3	4
g	3	3	0	1	9	0	12	0	0	5	8
t	0	1	1	1	0	0	0	0	1	2	1
//
; Sites	13
>site_0
CCCGGCGCCAG
>site_1
GACCGCCCCCT
>site_2
CGCCACGCCGC
>site_3
CTCCGCGCCTG
>site_4
CACCGCGCTCC
>site_5
CACCACGCCAC
>site_6
ACCCCCGCCCG
>site_7
CGCCGCGCCTC
>site_8
CGTCGCGCCAG
>site_9
GCCTGCGCCGG
>site_10
CACCGCGCCGG
>site_11
GCCCGCGCCGG
>site_12
CCCCACGCCGG
a	2	3	1	2	10	9	0	0	10	1	4
c	3	0	0	1	0	0	1	10	0	2	0
g	4	3	9	0	0	0	0	0	0	3	4
t	1	4	0	7	0	1	9	0	0	4	2
//
; Sites	10
>site_0
GTGTAATCATA
>site_1
CGGAAATCAGT
>site_2
CAGTAATCATG
>site_3
GTGTATTCAGG
>site_4
TGGCAATCACT
>site_5
CTGAAATCATA
>site_6
ATGTAATCATG
>site_7
AAGTAATCAAA
>site_8
GGGTAACCACA
>site_9
GAATAATCAGG
a	3	1	0	8	0	0	0	0	1	0	0
c	5	5	10	0	10	0	9	9	1	6	7
g	2	4	0	2	0	10	0	0	7	4	1
t	0	0	0	0	0	0	1	1	1	0	2
//
; Sites	10
>site_0
CACACGCCTGC
>site_1
GGCACGCCGCC
>site_2
GCCACGCCGCT
>site_3
CGCACGCCCCT
>site_4
ACCACGCCACC
>site_5
AGCACGCTGCC
>site_6
CGCACGTCGCG
>site_7
ACCGCGCCGGC
>site_8
CCCGCGCCGGC
>site_9
CCCACGCCGGC
; Host name	rsat
; Job started	2025-05-16.174111
; Job done	2025-05-16.174111
; Seconds	0.13
;	user	0.13
;	system	0.02
;	cuser	0
;	csystem	0
