; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	1	4	0	0	3	0	0	0	0	3	0
c	9	5	12	11	1	13	1	13	12	3	4
g	3	3	0	1	9	0	12	0	0	5	8
t	0	1	1	1	0	0	0	0	1	2	1
//
; Sites	13
>site_0
CCCGGCGCCAG
>site_1
GACCGCCCCCT
>site_2
CGCCACGCCGC
>site_3
CTCCGCGCCTG
>site_4
CACCGCGCTCC
>site_5
CACCACGCCAC
>site_6
ACCCCCGCCCG
>site_7
CGCCGCGCCTC
>site_8
CGTCGCGCCAG
>site_9
GCCTGCGCCGG
>site_10
CACCGCGCCGG
>site_11
GCCCGCGCCGG
>site_12
CCCCACGCCGG
a	4	4	11	11	11	11	11	0	2	6
c	4	2	0	0	0	0	0	0	2	0
g	2	4	0	0	0	0	0	0	4	2
t	1	1	0	0	0	0	0	11	3	3
//
; Sites	11
>site_0
CAAAAAATCA
>site_1
CGAAAAATTA
>site_2
GGAAAAATAA
>site_3
CTAAAAATAG
>site_4
CCAAAAATGT
>site_5
ACAAAAATGG
>site_6
AAAAAAATTA
>site_7
AAAAAAATTA
>site_8
AAAAAAATGT
>site_9
TGAAAAATGA
>site_10
GGAAAAATCT
a	2	2	0	8	0	0	0	0	1	0
c	4	4	8	0	9	0	8	9	2	5
g	3	3	1	1	0	9	0	0	5	4
t	0	0	0	0	0	0	1	0	1	0
//
; Sites	9
>site_0
CACACGCCTG
>site_1
GGCACGCCGC
>site_2
GCCACGCCGC
>site_3
GAGACGCCCG
>site_4
CGCACGCCCC
>site_5
ACCACGCCAC
>site_6
CGCACGTCGC
>site_7
ACCGCGCCGG
>site_8
CCCACGCCGG
; Host name	rsat
; Job started	2025-05-16.174108
; Job done	2025-05-16.174108
; Seconds	0.09
;	user	0.09
;	system	0.02
;	cuser	0
;	csystem	0
