/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1.tf
		file1	1	11	13
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv1_m1 MA1516.2 oligos_6nt_mkv1_m1 KLF3 0.808 0.735 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv1_m1 MA2328.1 oligos_6nt_mkv1_m1 ZBED4 0.715 0.650 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv1_m1 MA0742.2 oligos_6nt_mkv1_m1 KLF12 0.791 0.647 11 9 9 11 0.8182 0.8182 1.0000 R 2
oligos_6nt_mkv1_m1 MA0079.5 oligos_6nt_mkv1_m1 SP1 0.777 0.636 11 9 9 11 0.8182 0.8182 1.0000 R 0
oligos_6nt_mkv1_m1 MA0746.3 oligos_6nt_mkv1_m1 SP3 0.756 0.630 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_6nt_mkv1_m1 MA1511.2 oligos_6nt_mkv1_m1 KLF10 0.761 0.623 11 9 9 11 0.8182 0.8182 1.0000 R 2
oligos_6nt_mkv1_m1 MA1961.2 oligos_6nt_mkv1_m1 PATZ1 0.747 0.622 11 11 10 12 0.8333 0.9091 0.9091 R 1
oligos_6nt_mkv1_m1 MA0685.2 oligos_6nt_mkv1_m1 SP4 0.754 0.617 11 9 9 11 0.8182 0.8182 1.0000 R 0
oligos_6nt_mkv1_m1 MA0516.3 oligos_6nt_mkv1_m1 SP2 0.749 0.613 11 9 9 11 0.8182 0.8182 1.0000 R 0
oligos_6nt_mkv1_m1 MA0740.2 oligos_6nt_mkv1_m1 KLF14 0.741 0.606 11 9 9 11 0.8182 0.8182 1.0000 R 2
oligos_6nt_mkv1_m1 MA1515.2 oligos_6nt_mkv1_m1 KLF2 0.825 0.600 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_6nt_mkv1_m1 MA0741.1 oligos_6nt_mkv1_m1 KLF16 0.712 0.594 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_6nt_mkv1_m1 MA1517.2 oligos_6nt_mkv1_m1 KLF6 0.718 0.587 11 9 9 11 0.8182 0.8182 1.0000 D 2
oligos_6nt_mkv1_m1 MA1959.2 oligos_6nt_mkv1_m1 KLF7 0.794 0.578 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_6nt_mkv1_m1 MA1564.2 oligos_6nt_mkv1_m1 SP9 0.766 0.574 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_6nt_mkv1_m1 MA0493.3 oligos_6nt_mkv1_m1 KLF1 0.779 0.566 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_6nt_mkv1_m1 MA1513.2 oligos_6nt_mkv1_m1 KLF15 0.760 0.552 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_6nt_mkv1_m1 MA1713.2 oligos_6nt_mkv1_m1 ZNF610 0.735 0.551 11 10 9 12 0.7500 0.8182 0.9000 D -1
oligos_6nt_mkv1_m1 MA1512.2 oligos_6nt_mkv1_m1 KLF11 0.730 0.547 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_6nt_mkv1_m1 MA1650.2 oligos_6nt_mkv1_m1 ZBTB14 0.714 0.519 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_6nt_mkv1_m1 MA0747.2 oligos_6nt_mkv1_m1 SP8 0.714 0.495 11 11 9 13 0.6923 0.8182 0.8182 D 2
oligos_6nt_mkv1_m1 MA0162.5 oligos_6nt_mkv1_m1 EGR1 0.744 0.458 11 10 8 13 0.6154 0.7273 0.8000 D -2
oligos_6nt_mkv1_m1 MA1727.2 oligos_6nt_mkv1_m1 ZNF417 0.713 0.454 11 7 7 11 0.6364 0.6364 1.0000 D 3 
 Host name	rsat
 Job started	2025-05-16.174117
 Job done	2025-05-16.174125
 Seconds	1.22
	user	1.22
	system	0.42
	cuser	5.19
;	csystem	0.73