/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3.tf
		file1	1	10	9
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv1_m3 MA0746.3 oligos_6nt_mkv1_m3 SP3 0.814 0.740 10 11 10 11 0.9091 1.0000 0.9091 D 0
oligos_6nt_mkv1_m3 MA0741.1 oligos_6nt_mkv1_m3 KLF16 0.807 0.734 10 11 10 11 0.9091 1.0000 0.9091 D 0
oligos_6nt_mkv1_m3 MA1517.2 oligos_6nt_mkv1_m3 KLF6 0.799 0.719 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6nt_mkv1_m3 MA1512.2 oligos_6nt_mkv1_m3 KLF11 0.827 0.677 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv1_m3 MA1564.2 oligos_6nt_mkv1_m3 SP9 0.827 0.677 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv1_m3 MA0742.2 oligos_6nt_mkv1_m3 KLF12 0.744 0.670 10 9 9 10 0.9000 0.9000 1.0000 R 1
oligos_6nt_mkv1_m3 MA1516.2 oligos_6nt_mkv1_m3 KLF3 0.815 0.667 10 10 9 11 0.8182 0.9000 0.9000 D -1
oligos_6nt_mkv1_m3 MA1511.2 oligos_6nt_mkv1_m3 KLF10 0.739 0.665 10 9 9 10 0.9000 0.9000 1.0000 R 1
oligos_6nt_mkv1_m3 MA0740.2 oligos_6nt_mkv1_m3 KLF14 0.732 0.659 10 9 9 10 0.9000 0.9000 1.0000 R 1
oligos_6nt_mkv1_m3 MA1515.2 oligos_6nt_mkv1_m3 KLF2 0.821 0.657 10 8 8 10 0.8000 0.8000 1.0000 D 1
oligos_6nt_mkv1_m3 MA0747.2 oligos_6nt_mkv1_m3 SP8 0.802 0.601 10 11 9 12 0.7500 0.9000 0.8182 D 1
oligos_6nt_mkv1_m3 MA1959.2 oligos_6nt_mkv1_m3 KLF7 0.713 0.570 10 8 8 10 0.8000 0.8000 1.0000 R 1
oligos_6nt_mkv1_m3 MA0493.3 oligos_6nt_mkv1_m3 KLF1 0.711 0.569 10 8 8 10 0.8000 0.8000 1.0000 R 1
oligos_6nt_mkv1_m3 MA1513.2 oligos_6nt_mkv1_m3 KLF15 0.710 0.568 10 8 8 10 0.8000 0.8000 1.0000 D 1
oligos_6nt_mkv1_m3 MA0006.2 oligos_6nt_mkv1_m3 Ahr::Arnt 0.990 0.495 10 5 5 10 0.5000 0.5000 1.0000 R 2
oligos_6nt_mkv1_m3 MA0657.2 oligos_6nt_mkv1_m3 KLF13 0.839 0.494 10 17 10 17 0.5882 1.0000 0.5882 D -1
oligos_6nt_mkv1_m3 MA0014.4 oligos_6nt_mkv1_m3 PAX5 0.770 0.490 10 8 7 11 0.6364 0.7000 0.8750 R -1
oligos_6nt_mkv1_m3 MA0162.5 oligos_6nt_mkv1_m3 EGR1 0.863 0.464 10 10 7 13 0.5385 0.7000 0.7000 D -3
oligos_6nt_mkv1_m3 MA0472.2 oligos_6nt_mkv1_m3 EGR2 0.746 0.459 10 11 8 13 0.6154 0.8000 0.7273 D -3
oligos_6nt_mkv1_m3 MA0733.2 oligos_6nt_mkv1_m3 EGR4 0.725 0.446 10 11 8 13 0.6154 0.8000 0.7273 D -3
oligos_6nt_mkv1_m3 MA0732.2 oligos_6nt_mkv1_m3 EGR3 0.710 0.437 10 11 8 13 0.6154 0.8000 0.7273 D -3
oligos_6nt_mkv1_m3 MA0259.2 oligos_6nt_mkv1_m3 ARNT::HIF1A 0.861 0.431 10 5 5 10 0.5000 0.5000 1.0000 R 2
oligos_6nt_mkv1_m3 MA1106.2 oligos_6nt_mkv1_m3 HIF1A 0.711 0.427 10 6 6 10 0.6000 0.6000 1.0000 R 1
oligos_6nt_mkv1_m3 MA1713.2 oligos_6nt_mkv1_m3 ZNF610 0.743 0.400 10 10 7 13 0.5385 0.7000 0.7000 D 3 
 Host name	rsat
 Job started	2025-05-16.174129
 Job done	2025-05-16.174137
 Seconds	1.21
	user	1.21
	system	0.42
	cuser	5.51
;	csystem	0.7