One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_6nt_mkv1_m3/peak-motifs_oligos_6nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m3_shift3 ; 25 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)
; oligos_6nt_mkv1_m3; m=0 (reference); ncol1=10; shift=3; ncol=13; ---ssCACGCCgs ; Alignment reference a 0 0 0 2 2 0 8 0 0 0 0 1 0 c 0 0 0 4 4 8 0 9 0 8 9 2 5 g 0 0 0 3 3 1 1 0 9 0 0 5 4 t 0 0 0 0 0 0 0 0 0 1 0 1 0

MA0746.3_shift3 (SP3)
; oligos_6nt_mkv1_m3 versus MA0746.3 (SP3); m=1/24; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.740015; ---rCCACGCCCm ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0

MA0741.1_shift3 (KLF16)
; oligos_6nt_mkv1_m3 versus MA0741.1 (KLF16); m=2/24; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.733747; ---gmCMCgCCCM ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0

MA1517.2_shift4 (KLF6)
; oligos_6nt_mkv1_m3 versus MA1517.2 (KLF6); m=3/24; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.719414; ----cCACRCCCm ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0

MA1512.2_shift4 (KLF11)
; oligos_6nt_mkv1_m3 versus MA1512.2 (KLF11); m=4/24; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.677023; ----cCACGCCCm ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0

MA1564.2_shift4 (SP9)
; oligos_6nt_mkv1_m3 versus MA1564.2 (SP9); m=5/24; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.676778; ----cCmCGCCCm ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0

MA0742.2_rc_shift4 (KLF12_rc)
; oligos_6nt_mkv1_m3 versus MA0742.2_rc (KLF12_rc); m=6/24; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.669862; ----CCCCGCCCC ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948

MA1516.2_shift2 (KLF3)
; oligos_6nt_mkv1_m3 versus MA1516.2 (KLF3); m=7/24; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.667063; --grCCrCGCCC- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0

MA1511.2_rc_shift4 (KLF10_rc)
; oligos_6nt_mkv1_m3 versus MA1511.2_rc (KLF10_rc); m=8/24; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.665117; ----CCMCGCCCC ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427

MA0740.2_rc_shift4 (KLF14_rc)
; oligos_6nt_mkv1_m3 versus MA0740.2_rc (KLF14_rc); m=9/24; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.65908; ----CCMCGCCCm ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158

MA1515.2_shift4 (KLF2)
; oligos_6nt_mkv1_m3 versus MA1515.2 (KLF2); m=10/24; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.656557; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0

MA0747.2_shift4 (SP8)
; oligos_6nt_mkv1_m3 versus MA0747.2 (SP8); m=11/24; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.601146; ----mCACgCCCm ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0

MA1959.2_rc_shift4 (KLF7_rc)
; oligos_6nt_mkv1_m3 versus MA1959.2_rc (KLF7_rc); m=12/24; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.570374; ----CcMCGCCC- ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0

MA0493.3_rc_shift4 (KLF1_rc)
; oligos_6nt_mkv1_m3 versus MA0493.3_rc (KLF1_rc); m=13/24; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.569133; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0

MA1513.2_shift4 (KLF15)
; oligos_6nt_mkv1_m3 versus MA1513.2 (KLF15); m=14/24; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.568283; ----cCCCGCCC- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0

MA0006.2_rc_shift5 (Ahr::Arnt_rc)
; oligos_6nt_mkv1_m3 versus MA0006.2_rc (Ahr::Arnt_rc); m=15/24; ncol2=5; w=0; offset=2; strand=R; shift=5; score=0.495053; -----CACGC--- ; cor=; Ncor= a 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0 0 0

MA0657.2_shift2 (KLF13)
; oligos_6nt_mkv1_m3 versus MA0657.2 (KLF13); m=16/24; ncol2=17; w=-1; offset=-1; strand=D; shift=2; score=0.493609; --tRmCACGCCCC ; cor=; Ncor= a 0 0 733.0 1891.0 496.0 75.0 2384.0 0.0 24.0 0.0 4.0 1.0 509.0 c 0 0 46.0 0.0 923.0 924.0 0.0 1353.0 2.0 1596.0 1469.0 1760.0 1766.0 g 0 0 796.0 4630.0 58.0 2.0 11.0 7.0 3028.0 0.0 0.0 0.0 0.0 t 0 0 1766.0 59.0 102.0 61.0 0.0 3.0 9.0 7.0 0.0 16.0 10.0

MA0014.4_rc_shift2 (PAX5_rc)
; oligos_6nt_mkv1_m3 versus MA0014.4_rc (PAX5_rc); m=17/24; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.490046; --GGTCACGC--- ; cor=; Ncor= a 0 0 144.0 18.0 60.0 4.0 1200.0 23.0 84.0 12.0 0 0 0 c 0 0 118.0 57.0 70.0 1355.0 30.0 1243.0 34.0 1231.0 0 0 0 g 0 0 1081.0 1305.0 39.0 37.0 88.0 35.0 1276.0 151.0 0 0 0 t 0 0 69.0 32.0 1243.0 16.0 94.0 111.0 18.0 18.0 0 0 0

MA0162.5_shift0 (EGR1)
; oligos_6nt_mkv1_m3 versus MA0162.5 (EGR1); m=18/24; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.464451; mCGCCCACgC--- ; cor=; Ncor= a 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 c 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 g 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 t 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0

MA0472.2_shift0 (EGR2)
; oligos_6nt_mkv1_m3 versus MA0472.2 (EGR2); m=19/24; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.459067; mCGCCCACGCa-- ; cor=; Ncor= a 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 0 c 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 0 g 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 0 t 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0 0

MA0733.2_shift0 (EGR4)
; oligos_6nt_mkv1_m3 versus MA0733.2 (EGR4); m=20/24; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.446205; mCGCCCACGCA-- ; cor=; Ncor= a 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 0 0 c 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 0 0 g 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 0 0 t 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0 0 0

MA0732.2_shift0 (EGR3)
; oligos_6nt_mkv1_m3 versus MA0732.2 (EGR3); m=21/24; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.436964; mCGCCCMCGCA-- ; cor=; Ncor= a 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 0 0 c 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 0 0 g 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 0 0 t 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 0 0

MA0259.2_rc_shift5 (ARNT::HIF1A_rc)
; oligos_6nt_mkv1_m3 versus MA0259.2_rc (ARNT::HIF1A_rc); m=22/24; ncol2=5; w=0; offset=2; strand=R; shift=5; score=0.430633; -----CACGT--- ; cor=; Ncor= a 0 0 0 0 0 0.0 104.0 0.0 1.0 1.0 0 0 0 c 0 0 0 0 0 104.0 0.0 104.0 0.0 23.0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 103.0 2.0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 78.0 0 0 0

MA1106.2_rc_shift4 (HIF1A_rc)
; oligos_6nt_mkv1_m3 versus MA1106.2_rc (HIF1A_rc); m=23/24; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.426597; ----GCACGT--- ; cor=; Ncor= a 0 0 0 0 35.0 11.0 934.0 0.0 1.0 2.0 0 0 0 c 0 0 0 0 20.0 844.0 11.0 979.0 0.0 2.0 0 0 0 g 0 0 0 0 837.0 41.0 33.0 0.0 979.0 0.0 0 0 0 t 0 0 0 0 88.0 84.0 2.0 1.0 0.0 976.0 0 0 0

MA1713.2_shift6 (ZNF610)
; oligos_6nt_mkv1_m3 versus MA1713.2 (ZNF610); m=24/24; ncol2=10; w=0; offset=3; strand=D; shift=6; score=0.400034; ------scGCCGC ; cor=; Ncor= a 0 0 0 0 0 0 176.0 354.0 68.0 37.0 18.0 18.0 4.0 c 0 0 0 0 0 0 1222.0 1347.0 121.0 2245.0 2312.0 45.0 2357.0 g 0 0 0 0 0 0 738.0 392.0 2118.0 84.0 41.0 2312.0 21.0 t 0 0 0 0 0 0 250.0 293.0 79.0 20.0 15.0 11.0 4.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)				; oligos_6nt_mkv1_m3; m=0 (reference); ncol1=10; shift=3; ncol=13; ---ssCACGCCgs ; Alignment reference a 0 0 0 2 2 0 8 0 0 0 0 1 0 c 0 0 0 4 4 8 0 9 0 8 9 2 5 g 0 0 0 3 3 1 1 0 9 0 0 5 4 t 0 0 0 0 0 0 0 0 0 1 0 1 0
MA0746.3_shift3 (SP3)				; oligos_6nt_mkv1_m3 versus MA0746.3 (SP3); m=1/24; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.740015; ---rCCACGCCCm ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0
MA0741.1_shift3 (KLF16)				; oligos_6nt_mkv1_m3 versus MA0741.1 (KLF16); m=2/24; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.733747; ---gmCMCgCCCM ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0
MA1517.2_shift4 (KLF6)				; oligos_6nt_mkv1_m3 versus MA1517.2 (KLF6); m=3/24; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.719414; ----cCACRCCCm ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0
MA1512.2_shift4 (KLF11)				; oligos_6nt_mkv1_m3 versus MA1512.2 (KLF11); m=4/24; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.677023; ----cCACGCCCm ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0
MA1564.2_shift4 (SP9)				; oligos_6nt_mkv1_m3 versus MA1564.2 (SP9); m=5/24; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.676778; ----cCmCGCCCm ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0
MA0742.2_rc_shift4 (KLF12_rc)				; oligos_6nt_mkv1_m3 versus MA0742.2_rc (KLF12_rc); m=6/24; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.669862; ----CCCCGCCCC ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948
MA1516.2_shift2 (KLF3)				; oligos_6nt_mkv1_m3 versus MA1516.2 (KLF3); m=7/24; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.667063; --grCCrCGCCC- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0
MA1511.2_rc_shift4 (KLF10_rc)				; oligos_6nt_mkv1_m3 versus MA1511.2_rc (KLF10_rc); m=8/24; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.665117; ----CCMCGCCCC ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427
MA0740.2_rc_shift4 (KLF14_rc)				; oligos_6nt_mkv1_m3 versus MA0740.2_rc (KLF14_rc); m=9/24; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.65908; ----CCMCGCCCm ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158
MA1515.2_shift4 (KLF2)				; oligos_6nt_mkv1_m3 versus MA1515.2 (KLF2); m=10/24; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.656557; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0
MA0747.2_shift4 (SP8)				; oligos_6nt_mkv1_m3 versus MA0747.2 (SP8); m=11/24; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.601146; ----mCACgCCCm ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0
MA1959.2_rc_shift4 (KLF7_rc)				; oligos_6nt_mkv1_m3 versus MA1959.2_rc (KLF7_rc); m=12/24; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.570374; ----CcMCGCCC- ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0
MA0493.3_rc_shift4 (KLF1_rc)				; oligos_6nt_mkv1_m3 versus MA0493.3_rc (KLF1_rc); m=13/24; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.569133; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0
MA1513.2_shift4 (KLF15)				; oligos_6nt_mkv1_m3 versus MA1513.2 (KLF15); m=14/24; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.568283; ----cCCCGCCC- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0
MA0006.2_rc_shift5 (Ahr::Arnt_rc)				; oligos_6nt_mkv1_m3 versus MA0006.2_rc (Ahr::Arnt_rc); m=15/24; ncol2=5; w=0; offset=2; strand=R; shift=5; score=0.495053; -----CACGC--- ; cor=; Ncor= a 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0 0 0
MA0657.2_shift2 (KLF13)				; oligos_6nt_mkv1_m3 versus MA0657.2 (KLF13); m=16/24; ncol2=17; w=-1; offset=-1; strand=D; shift=2; score=0.493609; --tRmCACGCCCC ; cor=; Ncor= a 0 0 733.0 1891.0 496.0 75.0 2384.0 0.0 24.0 0.0 4.0 1.0 509.0 c 0 0 46.0 0.0 923.0 924.0 0.0 1353.0 2.0 1596.0 1469.0 1760.0 1766.0 g 0 0 796.0 4630.0 58.0 2.0 11.0 7.0 3028.0 0.0 0.0 0.0 0.0 t 0 0 1766.0 59.0 102.0 61.0 0.0 3.0 9.0 7.0 0.0 16.0 10.0
MA0014.4_rc_shift2 (PAX5_rc)				; oligos_6nt_mkv1_m3 versus MA0014.4_rc (PAX5_rc); m=17/24; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.490046; --GGTCACGC--- ; cor=; Ncor= a 0 0 144.0 18.0 60.0 4.0 1200.0 23.0 84.0 12.0 0 0 0 c 0 0 118.0 57.0 70.0 1355.0 30.0 1243.0 34.0 1231.0 0 0 0 g 0 0 1081.0 1305.0 39.0 37.0 88.0 35.0 1276.0 151.0 0 0 0 t 0 0 69.0 32.0 1243.0 16.0 94.0 111.0 18.0 18.0 0 0 0
MA0162.5_shift0 (EGR1)				; oligos_6nt_mkv1_m3 versus MA0162.5 (EGR1); m=18/24; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.464451; mCGCCCACgC--- ; cor=; Ncor= a 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 c 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 g 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 t 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0
MA0472.2_shift0 (EGR2)				; oligos_6nt_mkv1_m3 versus MA0472.2 (EGR2); m=19/24; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.459067; mCGCCCACGCa-- ; cor=; Ncor= a 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 0 c 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 0 g 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 0 t 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0 0
MA0733.2_shift0 (EGR4)				; oligos_6nt_mkv1_m3 versus MA0733.2 (EGR4); m=20/24; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.446205; mCGCCCACGCA-- ; cor=; Ncor= a 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 0 0 c 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 0 0 g 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 0 0 t 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0 0 0
MA0732.2_shift0 (EGR3)				; oligos_6nt_mkv1_m3 versus MA0732.2 (EGR3); m=21/24; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.436964; mCGCCCMCGCA-- ; cor=; Ncor= a 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 0 0 c 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 0 0 g 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 0 0 t 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 0 0
MA0259.2_rc_shift5 (ARNT::HIF1A_rc)				; oligos_6nt_mkv1_m3 versus MA0259.2_rc (ARNT::HIF1A_rc); m=22/24; ncol2=5; w=0; offset=2; strand=R; shift=5; score=0.430633; -----CACGT--- ; cor=; Ncor= a 0 0 0 0 0 0.0 104.0 0.0 1.0 1.0 0 0 0 c 0 0 0 0 0 104.0 0.0 104.0 0.0 23.0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 103.0 2.0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 78.0 0 0 0
MA1106.2_rc_shift4 (HIF1A_rc)				; oligos_6nt_mkv1_m3 versus MA1106.2_rc (HIF1A_rc); m=23/24; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.426597; ----GCACGT--- ; cor=; Ncor= a 0 0 0 0 35.0 11.0 934.0 0.0 1.0 2.0 0 0 0 c 0 0 0 0 20.0 844.0 11.0 979.0 0.0 2.0 0 0 0 g 0 0 0 0 837.0 41.0 33.0 0.0 979.0 0.0 0 0 0 t 0 0 0 0 88.0 84.0 2.0 1.0 0.0 976.0 0 0 0
MA1713.2_shift6 (ZNF610)				; oligos_6nt_mkv1_m3 versus MA1713.2 (ZNF610); m=24/24; ncol2=10; w=0; offset=3; strand=D; shift=6; score=0.400034; ------scGCCGC ; cor=; Ncor= a 0 0 0 0 0 0 176.0 354.0 68.0 37.0 18.0 18.0 4.0 c 0 0 0 0 0 0 1222.0 1347.0 121.0 2245.0 2312.0 45.0 2357.0 g 0 0 0 0 0 0 738.0 392.0 2118.0 84.0 41.0 2312.0 21.0 t 0 0 0 0 0 0 250.0 293.0 79.0 20.0 15.0 11.0 4.0