/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2.tf
		file1	1	11	10
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv1_m2 MA0593.2 oligos_7nt_mkv1_m2 FOXP2 0.766 0.627 11 9 9 11 0.8182 0.8182 1.0000 D 1
oligos_7nt_mkv1_m2 MA1720.2 oligos_7nt_mkv1_m2 ZNF85 0.752 0.579 11 12 10 13 0.7692 0.9091 0.8333 R -2
oligos_7nt_mkv1_m2 MA0030.2 oligos_7nt_mkv1_m2 FOXF2 0.702 0.575 11 9 9 11 0.8182 0.8182 1.0000 D 1
oligos_7nt_mkv1_m2 MA2118.1 oligos_7nt_mkv1_m2 FOXS1 0.774 0.563 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_7nt_mkv1_m2 MA0047.4 oligos_7nt_mkv1_m2 FOXA2 0.770 0.560 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_7nt_mkv1_m2 MA0148.5 oligos_7nt_mkv1_m2 FOXA1 0.767 0.558 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv1_m2 MA2339.1 oligos_7nt_mkv1_m2 Nanog 0.875 0.557 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA1607.2 oligos_7nt_mkv1_m2 Foxl2 0.741 0.556 11 10 9 12 0.7500 0.8182 0.9000 D -1
oligos_7nt_mkv1_m2 MA0613.1 oligos_7nt_mkv1_m2 FOXG1 0.743 0.540 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv1_m2 MA1489.1 oligos_7nt_mkv1_m2 FOXN3 0.709 0.515 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv1_m2 MA0468.1 oligos_7nt_mkv1_m2 DUX4 0.737 0.510 11 11 9 13 0.6923 0.8182 0.8182 D -2
oligos_7nt_mkv1_m2 MA0031.2 oligos_7nt_mkv1_m2 FOXD1 0.793 0.505 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA0480.3 oligos_7nt_mkv1_m2 Foxo1 0.786 0.500 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA0157.4 oligos_7nt_mkv1_m2 Foxo3 0.783 0.498 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA0852.3 oligos_7nt_mkv1_m2 FOXK1 0.783 0.498 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA1103.3 oligos_7nt_mkv1_m2 FOXK2 0.777 0.495 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA0042.2 oligos_7nt_mkv1_m2 FOXI1 0.776 0.494 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA2117.1 oligos_7nt_mkv1_m2 FOXP4 0.775 0.493 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA0850.1 oligos_7nt_mkv1_m2 FOXP3 0.774 0.493 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA0481.4 oligos_7nt_mkv1_m2 FOXP1 0.773 0.492 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA0706.2 oligos_7nt_mkv1_m2 MEOX2 0.773 0.492 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA1683.2 oligos_7nt_mkv1_m2 FOXA3 0.772 0.491 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA0849.1 oligos_7nt_mkv1_m2 FOXO6 0.771 0.491 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA1606.2 oligos_7nt_mkv1_m2 Foxf1 0.756 0.481 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA0848.1 oligos_7nt_mkv1_m2 FOXO4 0.754 0.480 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA0483.2 oligos_7nt_mkv1_m2 Gfi1B 0.775 0.477 11 10 8 13 0.6154 0.7273 0.8000 D 3
oligos_7nt_mkv1_m2 MA0679.3 oligos_7nt_mkv1_m2 ONECUT1 0.714 0.476 11 9 8 12 0.6667 0.7273 0.8889 D 3
oligos_7nt_mkv1_m2 MA2093.1 oligos_7nt_mkv1_m2 HOXB1 0.743 0.473 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA1496.2 oligos_7nt_mkv1_m2 HOXA4 0.743 0.473 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv1_m2 MA0038.3 oligos_7nt_mkv1_m2 GFI1 0.826 0.472 11 11 8 14 0.5714 0.7273 0.7273 D 3
oligos_7nt_mkv1_m2 MA1501.2 oligos_7nt_mkv1_m2 HOXB7 0.739 0.470 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA1549.2 oligos_7nt_mkv1_m2 POU6F1 0.738 0.470 11 7 7 11 0.6364 0.6364 1.0000 D 3
oligos_7nt_mkv1_m2 MA0793.2 oligos_7nt_mkv1_m2 POU6F2 0.703 0.468 11 9 8 12 0.6667 0.7273 0.8889 R 3
oligos_7nt_mkv1_m2 MA0661.2 oligos_7nt_mkv1_m2 MEOX1 0.734 0.467 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv1_m2 MA0712.3 oligos_7nt_mkv1_m2 OTX2 0.731 0.465 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv1_m2 MA0680.3 oligos_7nt_mkv1_m2 Pax7 0.755 0.464 11 10 8 13 0.6154 0.7273 0.8000 D 3
oligos_7nt_mkv1_m2 MA0033.2 oligos_7nt_mkv1_m2 FOXL1 0.727 0.463 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA2119.1 oligos_7nt_mkv1_m2 HOXA3 0.718 0.457 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv1_m2 MA0707.3 oligos_7nt_mkv1_m2 MNX1 0.835 0.456 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m2 MA0893.3 oligos_7nt_mkv1_m2 GSX2 0.714 0.454 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv1_m2 MA0887.2 oligos_7nt_mkv1_m2 EVX1 0.832 0.454 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m2 MA0883.2 oligos_7nt_mkv1_m2 Dmbx1 0.736 0.453 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_7nt_mkv1_m2 MA0888.2 oligos_7nt_mkv1_m2 EVX2 0.830 0.453 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m2 MA1519.2 oligos_7nt_mkv1_m2 LHX5 0.707 0.450 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA1497.2 oligos_7nt_mkv1_m2 HOXA6 0.701 0.446 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv1_m2 MA0710.2 oligos_7nt_mkv1_m2 NOTO 0.700 0.446 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv1_m2 MA0705.2 oligos_7nt_mkv1_m2 Lhx8 0.793 0.433 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m2 MA0711.2 oligos_7nt_mkv1_m2 OTX1 0.777 0.424 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m2 MA0900.3 oligos_7nt_mkv1_m2 HOXA2 0.773 0.421 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m2 MA0027.3 oligos_7nt_mkv1_m2 EN1 0.772 0.421 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m2 MA0681.3 oligos_7nt_mkv1_m2 PHOX2B 0.785 0.419 11 12 8 15 0.5333 0.7273 0.6667 D 3
oligos_7nt_mkv1_m2 MA0891.2 oligos_7nt_mkv1_m2 GSC2 0.767 0.418 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m2 MA1495.2 oligos_7nt_mkv1_m2 HOXA1 0.766 0.418 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m2 MA0648.2 oligos_7nt_mkv1_m2 GSC 0.761 0.415 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m2 MA1499.2 oligos_7nt_mkv1_m2 HOXB4 0.758 0.414 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m2 MA0704.2 oligos_7nt_mkv1_m2 Lhx4 0.756 0.412 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m2 MA0662.2 oligos_7nt_mkv1_m2 MIXL1 0.755 0.412 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m2 MA1507.2 oligos_7nt_mkv1_m2 HOXD4 0.752 0.410 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m2 MA0714.2 oligos_7nt_mkv1_m2 PITX3 0.750 0.409 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m2 MA1504.2 oligos_7nt_mkv1_m2 HOXC4 0.749 0.409 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m2 MA0716.2 oligos_7nt_mkv1_m2 PRRX1 0.741 0.404 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m2 MA0682.3 oligos_7nt_mkv1_m2 PITX1 0.741 0.404 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m2 MA0467.3 oligos_7nt_mkv1_m2 Crx 0.741 0.404 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m2 MA0025.3 oligos_7nt_mkv1_m2 NFIL3 0.747 0.402 11 9 7 13 0.5385 0.6364 0.7778 D -2
oligos_7nt_mkv1_m2 MA0628.2 oligos_7nt_mkv1_m2 POU6F1 0.737 0.402 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m2 MA0876.2 oligos_7nt_mkv1_m2 BSX 0.737 0.402 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m2 MA0612.3 oligos_7nt_mkv1_m2 EMX1 0.736 0.402 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m2 MA0132.3 oligos_7nt_mkv1_m2 PDX1 0.736 0.401 11 6 6 11 0.5455 0.5455 1.0000 R 3
oligos_7nt_mkv1_m2 MA0886.2 oligos_7nt_mkv1_m2 EMX2 0.736 0.401 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m2 MA0721.2 oligos_7nt_mkv1_m2 UNCX 0.734 0.400 11 6 6 11 0.5455 0.5455 1.0000 D 3 
 Host name	rsat
 Job started	2025-05-16.174145
 Job done	2025-05-16.174235
 Seconds	8.37
	user	8.37
	system	3.94
	cuser	33.75
;	csystem	4.34