/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3.tf
		file1	1	11	10
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv1_m3 MA0746.3 oligos_7nt_mkv1_m3 SP3 0.780 0.780 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m3 MA0741.1 oligos_7nt_mkv1_m3 KLF16 0.771 0.771 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m3 MA1564.2 oligos_7nt_mkv1_m3 SP9 0.799 0.726 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv1_m3 MA1512.2 oligos_7nt_mkv1_m3 KLF11 0.795 0.723 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv1_m3 MA0747.2 oligos_7nt_mkv1_m3 SP8 0.768 0.640 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_7nt_mkv1_m3 MA1517.2 oligos_7nt_mkv1_m3 KLF6 0.749 0.613 11 9 9 11 0.8182 0.8182 1.0000 D 1
oligos_7nt_mkv1_m3 MA0742.2 oligos_7nt_mkv1_m3 KLF12 0.729 0.596 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv1_m3 MA1516.2 oligos_7nt_mkv1_m3 KLF3 0.786 0.589 11 10 9 12 0.7500 0.8182 0.9000 D -1
oligos_7nt_mkv1_m3 MA1511.2 oligos_7nt_mkv1_m3 KLF10 0.719 0.588 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv1_m3 MA0740.2 oligos_7nt_mkv1_m3 KLF14 0.709 0.580 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv1_m3 MA1515.2 oligos_7nt_mkv1_m3 KLF2 0.783 0.570 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_7nt_mkv1_m3 MA0657.2 oligos_7nt_mkv1_m3 KLF13 0.756 0.489 11 17 11 17 0.6471 1.0000 0.6471 D -1
oligos_7nt_mkv1_m3 MA0006.2 oligos_7nt_mkv1_m3 Ahr::Arnt 0.986 0.448 11 5 5 11 0.4545 0.4545 1.0000 R 2
oligos_7nt_mkv1_m3 MA0472.2 oligos_7nt_mkv1_m3 EGR2 0.776 0.444 11 11 8 14 0.5714 0.7273 0.7273 D -3
oligos_7nt_mkv1_m3 MA0162.5 oligos_7nt_mkv1_m3 EGR1 0.883 0.442 11 10 7 14 0.5000 0.6364 0.7000 D -3
oligos_7nt_mkv1_m3 MA0733.2 oligos_7nt_mkv1_m3 EGR4 0.762 0.436 11 11 8 14 0.5714 0.7273 0.7273 D -3
oligos_7nt_mkv1_m3 MA1959.2 oligos_7nt_mkv1_m3 KLF7 0.733 0.427 11 8 7 12 0.5833 0.6364 0.8750 R 4
oligos_7nt_mkv1_m3 MA0732.2 oligos_7nt_mkv1_m3 EGR3 0.747 0.427 11 11 8 14 0.5714 0.7273 0.7273 D -3
oligos_7nt_mkv1_m3 MA0014.4 oligos_7nt_mkv1_m3 PAX5 0.730 0.426 11 8 7 12 0.5833 0.6364 0.8750 R -1 
 Host name	rsat
 Job started	2025-05-16.174235
 Job done	2025-05-16.174242
 Seconds	1.23
	user	1.24
	system	0.34
	cuser	4.81
;	csystem	0.55