One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m3_shift3 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m3_shift3 (oligos_7nt_mkv1_m3)
; oligos_7nt_mkv1_m3; m=0 (reference); ncol1=11; shift=3; ncol=14; ---msCACGCCGsC ; Alignment reference a 0 0 0 3 1 0 8 0 0 0 0 1 0 0 c 0 0 0 5 5 10 0 10 0 9 9 1 6 7 g 0 0 0 2 4 0 2 0 10 0 0 7 4 1 t 0 0 0 0 0 0 0 0 0 1 1 1 0 2

MA0746.3_shift3 (SP3)
; oligos_7nt_mkv1_m3 versus MA0746.3 (SP3); m=1/19; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.779616; ---rCCACGCCCmC ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0

MA0741.1_shift3 (KLF16)
; oligos_7nt_mkv1_m3 versus MA0741.1 (KLF16); m=2/19; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.770806; ---gmCMCgCCCMC ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0

MA1564.2_shift4 (SP9)
; oligos_7nt_mkv1_m3 versus MA1564.2 (SP9); m=3/19; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.726042; ----cCmCGCCCmc ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0

MA1512.2_shift4 (KLF11)
; oligos_7nt_mkv1_m3 versus MA1512.2 (KLF11); m=4/19; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.723021; ----cCACGCCCmC ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0

MA0747.2_shift4 (SP8)
; oligos_7nt_mkv1_m3 versus MA0747.2 (SP8); m=5/19; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.640119; ----mCACgCCCmC ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0

MA1517.2_shift4 (KLF6)
; oligos_7nt_mkv1_m3 versus MA1517.2 (KLF6); m=6/19; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.61315; ----cCACRCCCm- ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0

MA0742.2_rc_shift4 (KLF12_rc)
; oligos_7nt_mkv1_m3 versus MA0742.2_rc (KLF12_rc); m=7/19; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.596196; ----CCCCGCCCC- ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0

MA1516.2_shift2 (KLF3)
; oligos_7nt_mkv1_m3 versus MA1516.2 (KLF3); m=8/19; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.589197; --grCCrCGCCC-- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0

MA1511.2_rc_shift4 (KLF10_rc)
; oligos_7nt_mkv1_m3 versus MA1511.2_rc (KLF10_rc); m=9/19; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.588148; ----CCMCGCCCC- ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0

MA0740.2_rc_shift4 (KLF14_rc)
; oligos_7nt_mkv1_m3 versus MA0740.2_rc (KLF14_rc); m=10/19; ncol2=9; w=0; offset=1; strand=R; shift=4; score= 0.5797; ----CCMCGCCCm- ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0

MA1515.2_shift4 (KLF2)
; oligos_7nt_mkv1_m3 versus MA1515.2 (KLF2); m=11/19; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.56975; ----CCmCrCCC-- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0

MA0657.2_shift2 (KLF13)
; oligos_7nt_mkv1_m3 versus MA0657.2 (KLF13); m=12/19; ncol2=17; w=-1; offset=-1; strand=D; shift=2; score=0.488932; --tRmCACGCCCCY ; cor=; Ncor= a 0 0 733.0 1891.0 496.0 75.0 2384.0 0.0 24.0 0.0 4.0 1.0 509.0 3.0 c 0 0 46.0 0.0 923.0 924.0 0.0 1353.0 2.0 1596.0 1469.0 1760.0 1766.0 638.0 g 0 0 796.0 4630.0 58.0 2.0 11.0 7.0 3028.0 0.0 0.0 0.0 0.0 3.0 t 0 0 1766.0 59.0 102.0 61.0 0.0 3.0 9.0 7.0 0.0 16.0 10.0 1403.0

MA0006.2_rc_shift5 (Ahr::Arnt_rc)
; oligos_7nt_mkv1_m3 versus MA0006.2_rc (Ahr::Arnt_rc); m=13/19; ncol2=5; w=0; offset=2; strand=R; shift=5; score=0.448014; -----CACGC---- ; cor=; Ncor= a 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 0 0 0 0 c 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0 0 0 0

MA0472.2_shift0 (EGR2)
; oligos_7nt_mkv1_m3 versus MA0472.2 (EGR2); m=14/19; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.443549; mCGCCCACGCa--- ; cor=; Ncor= a 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 0 0 c 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 0 0 g 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 0 0 t 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0 0 0

MA0162.5_shift0 (EGR1)
; oligos_7nt_mkv1_m3 versus MA0162.5 (EGR1); m=15/19; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.441596; mCGCCCACgC---- ; cor=; Ncor= a 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 0 c 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 0 g 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 0 t 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0 0

MA0733.2_shift0 (EGR4)
; oligos_7nt_mkv1_m3 versus MA0733.2 (EGR4); m=16/19; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.435585; mCGCCCACGCA--- ; cor=; Ncor= a 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 0 0 0 c 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 0 0 0 g 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 0 0 0 t 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0 0 0 0

MA1959.2_rc_shift7 (KLF7_rc)
; oligos_7nt_mkv1_m3 versus MA1959.2_rc (KLF7_rc); m=17/19; ncol2=8; w=0; offset=4; strand=R; shift=7; score=0.427473; -------CcMCGCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 c 0 0 0 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 g 0 0 0 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 t 0 0 0 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0

MA0732.2_shift0 (EGR3)
; oligos_7nt_mkv1_m3 versus MA0732.2 (EGR3); m=18/19; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.426763; mCGCCCMCGCA--- ; cor=; Ncor= a 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 0 0 0 c 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 0 0 0 g 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 0 0 0 t 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 0 0 0

MA0014.4_rc_shift2 (PAX5_rc)
; oligos_7nt_mkv1_m3 versus MA0014.4_rc (PAX5_rc); m=19/19; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.425794; --GGTCACGC---- ; cor=; Ncor= a 0 0 144.0 18.0 60.0 4.0 1200.0 23.0 84.0 12.0 0 0 0 0 c 0 0 118.0 57.0 70.0 1355.0 30.0 1243.0 34.0 1231.0 0 0 0 0 g 0 0 1081.0 1305.0 39.0 37.0 88.0 35.0 1276.0 151.0 0 0 0 0 t 0 0 69.0 32.0 1243.0 16.0 94.0 111.0 18.0 18.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m3_shift3 (oligos_7nt_mkv1_m3)				; oligos_7nt_mkv1_m3; m=0 (reference); ncol1=11; shift=3; ncol=14; ---msCACGCCGsC ; Alignment reference a 0 0 0 3 1 0 8 0 0 0 0 1 0 0 c 0 0 0 5 5 10 0 10 0 9 9 1 6 7 g 0 0 0 2 4 0 2 0 10 0 0 7 4 1 t 0 0 0 0 0 0 0 0 0 1 1 1 0 2
MA0746.3_shift3 (SP3)				; oligos_7nt_mkv1_m3 versus MA0746.3 (SP3); m=1/19; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.779616; ---rCCACGCCCmC ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0
MA0741.1_shift3 (KLF16)				; oligos_7nt_mkv1_m3 versus MA0741.1 (KLF16); m=2/19; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.770806; ---gmCMCgCCCMC ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0
MA1564.2_shift4 (SP9)				; oligos_7nt_mkv1_m3 versus MA1564.2 (SP9); m=3/19; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.726042; ----cCmCGCCCmc ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0
MA1512.2_shift4 (KLF11)				; oligos_7nt_mkv1_m3 versus MA1512.2 (KLF11); m=4/19; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.723021; ----cCACGCCCmC ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0
MA0747.2_shift4 (SP8)				; oligos_7nt_mkv1_m3 versus MA0747.2 (SP8); m=5/19; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.640119; ----mCACgCCCmC ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0
MA1517.2_shift4 (KLF6)				; oligos_7nt_mkv1_m3 versus MA1517.2 (KLF6); m=6/19; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.61315; ----cCACRCCCm- ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0
MA0742.2_rc_shift4 (KLF12_rc)				; oligos_7nt_mkv1_m3 versus MA0742.2_rc (KLF12_rc); m=7/19; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.596196; ----CCCCGCCCC- ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0
MA1516.2_shift2 (KLF3)				; oligos_7nt_mkv1_m3 versus MA1516.2 (KLF3); m=8/19; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.589197; --grCCrCGCCC-- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0
MA1511.2_rc_shift4 (KLF10_rc)				; oligos_7nt_mkv1_m3 versus MA1511.2_rc (KLF10_rc); m=9/19; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.588148; ----CCMCGCCCC- ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0
MA0740.2_rc_shift4 (KLF14_rc)				; oligos_7nt_mkv1_m3 versus MA0740.2_rc (KLF14_rc); m=10/19; ncol2=9; w=0; offset=1; strand=R; shift=4; score= 0.5797; ----CCMCGCCCm- ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0
MA1515.2_shift4 (KLF2)				; oligos_7nt_mkv1_m3 versus MA1515.2 (KLF2); m=11/19; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.56975; ----CCmCrCCC-- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0
MA0657.2_shift2 (KLF13)				; oligos_7nt_mkv1_m3 versus MA0657.2 (KLF13); m=12/19; ncol2=17; w=-1; offset=-1; strand=D; shift=2; score=0.488932; --tRmCACGCCCCY ; cor=; Ncor= a 0 0 733.0 1891.0 496.0 75.0 2384.0 0.0 24.0 0.0 4.0 1.0 509.0 3.0 c 0 0 46.0 0.0 923.0 924.0 0.0 1353.0 2.0 1596.0 1469.0 1760.0 1766.0 638.0 g 0 0 796.0 4630.0 58.0 2.0 11.0 7.0 3028.0 0.0 0.0 0.0 0.0 3.0 t 0 0 1766.0 59.0 102.0 61.0 0.0 3.0 9.0 7.0 0.0 16.0 10.0 1403.0
MA0006.2_rc_shift5 (Ahr::Arnt_rc)				; oligos_7nt_mkv1_m3 versus MA0006.2_rc (Ahr::Arnt_rc); m=13/19; ncol2=5; w=0; offset=2; strand=R; shift=5; score=0.448014; -----CACGC---- ; cor=; Ncor= a 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 0 0 0 0 c 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0 0 0 0
MA0472.2_shift0 (EGR2)				; oligos_7nt_mkv1_m3 versus MA0472.2 (EGR2); m=14/19; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.443549; mCGCCCACGCa--- ; cor=; Ncor= a 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 0 0 c 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 0 0 g 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 0 0 t 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0 0 0
MA0162.5_shift0 (EGR1)				; oligos_7nt_mkv1_m3 versus MA0162.5 (EGR1); m=15/19; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.441596; mCGCCCACgC---- ; cor=; Ncor= a 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 0 c 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 0 g 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 0 t 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0 0
MA0733.2_shift0 (EGR4)				; oligos_7nt_mkv1_m3 versus MA0733.2 (EGR4); m=16/19; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.435585; mCGCCCACGCA--- ; cor=; Ncor= a 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 0 0 0 c 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 0 0 0 g 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 0 0 0 t 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0 0 0 0
MA1959.2_rc_shift7 (KLF7_rc)				; oligos_7nt_mkv1_m3 versus MA1959.2_rc (KLF7_rc); m=17/19; ncol2=8; w=0; offset=4; strand=R; shift=7; score=0.427473; -------CcMCGCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 c 0 0 0 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 g 0 0 0 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 t 0 0 0 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0
MA0732.2_shift0 (EGR3)				; oligos_7nt_mkv1_m3 versus MA0732.2 (EGR3); m=18/19; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.426763; mCGCCCMCGCA--- ; cor=; Ncor= a 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 0 0 0 c 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 0 0 0 g 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 0 0 0 t 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 0 0 0
MA0014.4_rc_shift2 (PAX5_rc)				; oligos_7nt_mkv1_m3 versus MA0014.4_rc (PAX5_rc); m=19/19; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.425794; --GGTCACGC---- ; cor=; Ncor= a 0 0 144.0 18.0 60.0 4.0 1200.0 23.0 84.0 12.0 0 0 0 0 c 0 0 118.0 57.0 70.0 1355.0 30.0 1243.0 34.0 1231.0 0 0 0 0 g 0 0 1081.0 1305.0 39.0 37.0 88.0 35.0 1276.0 151.0 0 0 0 0 t 0 0 69.0 32.0 1243.0 16.0 94.0 111.0 18.0 18.0 0 0 0 0