One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174057_2025-05-16.174057_O2IjFa/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m3_shift3 ; 20 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m3_shift3 (oligos_7nt_mkv1_m3)
; oligos_7nt_mkv1_m3; m=0 (reference); ncol1=11; shift=3; ncol=14; ---msCACGCCGsC ; Alignment reference a 0 0 0 3 1 0 8 0 0 0 0 1 0 0 c 0 0 0 5 5 10 0 10 0 9 9 1 6 7 g 0 0 0 2 4 0 2 0 10 0 0 7 4 1 t 0 0 0 0 0 0 0 0 0 1 1 1 0 2

MA0746.3_shift3 (SP3)
; oligos_7nt_mkv1_m3 versus MA0746.3 (SP3); m=1/19; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.779616; ---rCCACGCCCmC ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0

MA0741.1_shift3 (KLF16)
; oligos_7nt_mkv1_m3 versus MA0741.1 (KLF16); m=2/19; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.770806; ---gmCMCgCCCMC ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0

MA1564.2_shift4 (SP9)
; oligos_7nt_mkv1_m3 versus MA1564.2 (SP9); m=3/19; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.726042; ----cCmCGCCCmc ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0

MA1512.2_shift4 (KLF11)
; oligos_7nt_mkv1_m3 versus MA1512.2 (KLF11); m=4/19; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.723021; ----cCACGCCCmC ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0

MA0747.2_shift4 (SP8)
; oligos_7nt_mkv1_m3 versus MA0747.2 (SP8); m=5/19; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.640119; ----mCACgCCCmC ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0

MA1517.2_shift4 (KLF6)
; oligos_7nt_mkv1_m3 versus MA1517.2 (KLF6); m=6/19; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.61315; ----cCACRCCCm- ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0

MA0742.2_rc_shift4 (KLF12_rc)
; oligos_7nt_mkv1_m3 versus MA0742.2_rc (KLF12_rc); m=7/19; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.596196; ----CCCCGCCCC- ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0

MA1516.2_shift2 (KLF3)
; oligos_7nt_mkv1_m3 versus MA1516.2 (KLF3); m=8/19; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.589197; --grCCrCGCCC-- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0

MA1511.2_rc_shift4 (KLF10_rc)
; oligos_7nt_mkv1_m3 versus MA1511.2_rc (KLF10_rc); m=9/19; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.588148; ----CCMCGCCCC- ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0

MA0740.2_rc_shift4 (KLF14_rc)
; oligos_7nt_mkv1_m3 versus MA0740.2_rc (KLF14_rc); m=10/19; ncol2=9; w=0; offset=1; strand=R; shift=4; score= 0.5797; ----CCMCGCCCm- ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0

MA1515.2_shift4 (KLF2)
; oligos_7nt_mkv1_m3 versus MA1515.2 (KLF2); m=11/19; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.56975; ----CCmCrCCC-- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0

MA0657.2_shift2 (KLF13)
; oligos_7nt_mkv1_m3 versus MA0657.2 (KLF13); m=12/19; ncol2=17; w=-1; offset=-1; strand=D; shift=2; score=0.488932; --tRmCACGCCCCY ; cor=; Ncor= a 0 0 733.0 1891.0 496.0 75.0 2384.0 0.0 24.0 0.0 4.0 1.0 509.0 3.0 c 0 0 46.0 0.0 923.0 924.0 0.0 1353.0 2.0 1596.0 1469.0 1760.0 1766.0 638.0 g 0 0 796.0 4630.0 58.0 2.0 11.0 7.0 3028.0 0.0 0.0 0.0 0.0 3.0 t 0 0 1766.0 59.0 102.0 61.0 0.0 3.0 9.0 7.0 0.0 16.0 10.0 1403.0

MA0006.2_rc_shift5 (Ahr::Arnt_rc)
; oligos_7nt_mkv1_m3 versus MA0006.2_rc (Ahr::Arnt_rc); m=13/19; ncol2=5; w=0; offset=2; strand=R; shift=5; score=0.448014; -----CACGC---- ; cor=; Ncor= a 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 0 0 0 0 c 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0 0 0 0

MA0472.2_shift0 (EGR2)
; oligos_7nt_mkv1_m3 versus MA0472.2 (EGR2); m=14/19; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.443549; mCGCCCACGCa--- ; cor=; Ncor= a 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 0 0 c 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 0 0 g 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 0 0 t 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0 0 0

MA0162.5_shift0 (EGR1)
; oligos_7nt_mkv1_m3 versus MA0162.5 (EGR1); m=15/19; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.441596; mCGCCCACgC---- ; cor=; Ncor= a 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 0 c 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 0 g 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 0 t 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0 0

MA0733.2_shift0 (EGR4)
; oligos_7nt_mkv1_m3 versus MA0733.2 (EGR4); m=16/19; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.435585; mCGCCCACGCA--- ; cor=; Ncor= a 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 0 0 0 c 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 0 0 0 g 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 0 0 0 t 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0 0 0 0

MA1959.2_rc_shift7 (KLF7_rc)
; oligos_7nt_mkv1_m3 versus MA1959.2_rc (KLF7_rc); m=17/19; ncol2=8; w=0; offset=4; strand=R; shift=7; score=0.427473; -------CcMCGCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 c 0 0 0 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 g 0 0 0 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 t 0 0 0 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0

MA0732.2_shift0 (EGR3)
; oligos_7nt_mkv1_m3 versus MA0732.2 (EGR3); m=18/19; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.426763; mCGCCCMCGCA--- ; cor=; Ncor= a 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 0 0 0 c 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 0 0 0 g 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 0 0 0 t 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 0 0 0

MA0014.4_rc_shift2 (PAX5_rc)
; oligos_7nt_mkv1_m3 versus MA0014.4_rc (PAX5_rc); m=19/19; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.425794; --GGTCACGC---- ; cor=; Ncor= a 0 0 144.0 18.0 60.0 4.0 1200.0 23.0 84.0 12.0 0 0 0 0 c 0 0 118.0 57.0 70.0 1355.0 30.0 1243.0 34.0 1231.0 0 0 0 0 g 0 0 1081.0 1305.0 39.0 37.0 88.0 35.0 1276.0 151.0 0 0 0 0 t 0 0 69.0 32.0 1243.0 16.0 94.0 111.0 18.0 18.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m2_shift3 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)
; oligos_6nt_mkv1_m2; m=0 (reference); ncol1=10; shift=3; ncol=13; ---mrAAAAATkw ; Alignment reference a 0 0 0 4 4 11 11 11 11 11 0 2 6 c 0 0 0 4 2 0 0 0 0 0 0 2 0 g 0 0 0 2 4 0 0 0 0 0 0 4 2 t 0 0 0 1 1 0 0 0 0 0 11 3 3

MA0052.5_shift3 (MEF2A)
; oligos_6nt_mkv1_m2 versus MA0052.5 (MEF2A); m=1/10; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.75892; ---cTAAAAATAG ; cor=; Ncor= a 0 0 0 1984.0 627.0 12437.0 13132.0 14680.0 14453.0 14956.0 441.0 15582.0 2566.0 c 0 0 0 10919.0 2974.0 1013.0 253.0 141.0 231.0 173.0 349.0 50.0 1060.0 g 0 0 0 1007.0 236.0 1066.0 610.0 506.0 241.0 202.0 215.0 422.0 11104.0 t 0 0 0 2252.0 12325.0 1646.0 2167.0 835.0 1237.0 831.0 15157.0 108.0 1432.0

MA2124.1_rc_shift3 (Hmga1_rc)
; oligos_6nt_mkv1_m2 versus MA2124.1_rc (Hmga1_rc); m=2/10; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.697897; ---wTAAAAAT-- ; cor=; Ncor= a 0 0 0 11340.0 542.0 24333.0 24654.0 24779.0 24269.0 24172.0 496.0 0 0 c 0 0 0 2438.0 358.0 294.0 237.0 138.0 303.0 421.0 188.0 0 0 g 0 0 0 2348.0 473.0 409.0 264.0 194.0 200.0 393.0 71.0 0 0 t 0 0 0 9680.0 24433.0 770.0 651.0 695.0 1034.0 820.0 25051.0 0 0

MA0497.2_shift3 (MEF2C)
; oligos_6nt_mkv1_m2 versus MA0497.2 (MEF2C); m=3/10; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.694716; ---cyAAAAATAG ; cor=; Ncor= a 0 0 0 382.0 0.0 1616.0 1706.0 2107.0 2131.0 2135.0 56.0 2177.0 389.0 c 0 0 0 1412.0 985.0 256.0 32.0 0.0 0.0 0.0 62.0 0.0 120.0 g 0 0 0 78.0 0.0 74.0 241.0 87.0 2.0 4.0 0.0 32.0 1671.0 t 0 0 0 337.0 1224.0 263.0 230.0 15.0 76.0 70.0 2091.0 0.0 29.0

MA1562.2_shift3 (SOX14)
; oligos_6nt_mkv1_m2 versus MA1562.2 (SOX14); m=4/10; ncol2=9; w=0; offset=0; strand=D; shift=3; score=0.658257; ---CGAACAATg- ; cor=; Ncor= a 0 0 0 68.0 44.0 594.0 594.0 4.0 594.0 594.0 0.0 75.0 0 c 0 0 0 594.0 18.0 8.0 13.0 594.0 0.0 17.0 2.0 67.0 0 g 0 0 0 44.0 594.0 27.0 0.0 10.0 0.0 0.0 16.0 372.0 0 t 0 0 0 99.0 70.0 37.0 19.0 17.0 0.0 5.0 594.0 80.0 0

MA1125.2_shift4 (ZNF384)
; oligos_6nt_mkv1_m2 versus MA1125.2 (ZNF384); m=5/10; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.626226; ----AAAAAAaa- ; cor=; Ncor= a 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 c 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 g 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 t 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0

MA1563.2_shift5 (SOX18)
; oligos_6nt_mkv1_m2 versus MA1563.2 (SOX18); m=6/10; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.579047; -----aACAATdv ; cor=; Ncor= a 0 0 0 0 0 424.0 424.0 0.0 424.0 424.0 0.0 203.0 382.0 c 0 0 0 0 0 81.0 0.0 424.0 0.0 35.0 0.0 0.0 551.0 g 0 0 0 0 0 170.0 0.0 91.0 0.0 17.0 0.0 221.0 424.0 t 0 0 0 0 0 34.0 0.0 2.0 0.0 0.0 447.0 228.0 0.0

MA0868.3_shift5 (SOX8)
; oligos_6nt_mkv1_m2 versus MA0868.3 (SOX8); m=7/10; ncol2=7; w=0; offset=2; strand=D; shift=5; score=0.521286; -----AACAATr- ; cor=; Ncor= a 0 0 0 0 0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 0 c 0 0 0 0 0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 0 g 0 0 0 0 0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 0 t 0 0 0 0 0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 0

MA0757.2_shift5 (ONECUT3)
; oligos_6nt_mkv1_m2 versus MA0757.2 (ONECUT3); m=8/10; ncol2=12; w=0; offset=2; strand=D; shift=5; score=0.486351; -----aAAAATCr ; cor=; Ncor= a 0 0 0 0 0 3851.0 6080.0 6080.0 6080.0 6080.0 32.0 23.0 3950.0 c 0 0 0 0 0 379.0 274.0 173.0 28.0 5.0 103.0 6080.0 20.0 g 0 0 0 0 0 1141.0 498.0 112.0 102.0 41.0 14.0 3.0 2130.0 t 0 0 0 0 0 709.0 878.0 1221.0 54.0 11.0 6080.0 5.0 11.0

MA1729.2_shift0 (ZNF680)
; oligos_6nt_mkv1_m2 versus MA1729.2 (ZNF680); m=9/10; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.43642; CCAAGAAGAAT-- ; cor=; Ncor= a 418.0 1120.0 5394.0 4522.0 43.0 5681.0 5479.0 494.0 5661.0 4020.0 202.0 0 0 c 4870.0 4324.0 60.0 17.0 14.0 23.0 13.0 40.0 41.0 808.0 396.0 0 0 g 133.0 69.0 208.0 1116.0 5691.0 44.0 203.0 5144.0 39.0 163.0 213.0 0 0 t 345.0 253.0 104.0 111.0 18.0 18.0 71.0 88.0 25.0 775.0 4955.0 0 0

MA0606.3_shift1 (Nfat5)
; oligos_6nt_mkv1_m2 versus MA0606.3 (Nfat5); m=10/10; ncol2=8; w=-2; offset=-2; strand=D; shift=1; score=0.406343; -ATGGAAAA---- ; cor=; Ncor= a 0 279.0 35.0 13.0 16.0 328.0 336.0 334.0 315.0 0 0 0 0 c 0 17.0 10.0 0.0 8.0 8.0 1.0 4.0 8.0 0 0 0 0 g 0 47.0 9.0 332.0 325.0 15.0 10.0 8.0 19.0 0 0 0 0 t 0 13.0 302.0 11.0 7.0 5.0 9.0 10.0 14.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m3_shift3 ; 25 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)
; oligos_6nt_mkv1_m3; m=0 (reference); ncol1=10; shift=3; ncol=13; ---ssCACGCCgs ; Alignment reference a 0 0 0 2 2 0 8 0 0 0 0 1 0 c 0 0 0 4 4 8 0 9 0 8 9 2 5 g 0 0 0 3 3 1 1 0 9 0 0 5 4 t 0 0 0 0 0 0 0 0 0 1 0 1 0

MA0746.3_shift3 (SP3)
; oligos_6nt_mkv1_m3 versus MA0746.3 (SP3); m=1/24; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.740015; ---rCCACGCCCm ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0

MA0741.1_shift3 (KLF16)
; oligos_6nt_mkv1_m3 versus MA0741.1 (KLF16); m=2/24; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.733747; ---gmCMCgCCCM ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0

MA1517.2_shift4 (KLF6)
; oligos_6nt_mkv1_m3 versus MA1517.2 (KLF6); m=3/24; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.719414; ----cCACRCCCm ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0

MA1512.2_shift4 (KLF11)
; oligos_6nt_mkv1_m3 versus MA1512.2 (KLF11); m=4/24; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.677023; ----cCACGCCCm ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0

MA1564.2_shift4 (SP9)
; oligos_6nt_mkv1_m3 versus MA1564.2 (SP9); m=5/24; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.676778; ----cCmCGCCCm ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0

MA0742.2_rc_shift4 (KLF12_rc)
; oligos_6nt_mkv1_m3 versus MA0742.2_rc (KLF12_rc); m=6/24; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.669862; ----CCCCGCCCC ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948

MA1516.2_shift2 (KLF3)
; oligos_6nt_mkv1_m3 versus MA1516.2 (KLF3); m=7/24; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.667063; --grCCrCGCCC- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0

MA1511.2_rc_shift4 (KLF10_rc)
; oligos_6nt_mkv1_m3 versus MA1511.2_rc (KLF10_rc); m=8/24; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.665117; ----CCMCGCCCC ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427

MA0740.2_rc_shift4 (KLF14_rc)
; oligos_6nt_mkv1_m3 versus MA0740.2_rc (KLF14_rc); m=9/24; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.65908; ----CCMCGCCCm ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158

MA1515.2_shift4 (KLF2)
; oligos_6nt_mkv1_m3 versus MA1515.2 (KLF2); m=10/24; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.656557; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0

MA0747.2_shift4 (SP8)
; oligos_6nt_mkv1_m3 versus MA0747.2 (SP8); m=11/24; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.601146; ----mCACgCCCm ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0

MA1959.2_rc_shift4 (KLF7_rc)
; oligos_6nt_mkv1_m3 versus MA1959.2_rc (KLF7_rc); m=12/24; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.570374; ----CcMCGCCC- ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0

MA0493.3_rc_shift4 (KLF1_rc)
; oligos_6nt_mkv1_m3 versus MA0493.3_rc (KLF1_rc); m=13/24; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.569133; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0

MA1513.2_shift4 (KLF15)
; oligos_6nt_mkv1_m3 versus MA1513.2 (KLF15); m=14/24; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.568283; ----cCCCGCCC- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0

MA0006.2_rc_shift5 (Ahr::Arnt_rc)
; oligos_6nt_mkv1_m3 versus MA0006.2_rc (Ahr::Arnt_rc); m=15/24; ncol2=5; w=0; offset=2; strand=R; shift=5; score=0.495053; -----CACGC--- ; cor=; Ncor= a 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0 0 0

MA0657.2_shift2 (KLF13)
; oligos_6nt_mkv1_m3 versus MA0657.2 (KLF13); m=16/24; ncol2=17; w=-1; offset=-1; strand=D; shift=2; score=0.493609; --tRmCACGCCCC ; cor=; Ncor= a 0 0 733.0 1891.0 496.0 75.0 2384.0 0.0 24.0 0.0 4.0 1.0 509.0 c 0 0 46.0 0.0 923.0 924.0 0.0 1353.0 2.0 1596.0 1469.0 1760.0 1766.0 g 0 0 796.0 4630.0 58.0 2.0 11.0 7.0 3028.0 0.0 0.0 0.0 0.0 t 0 0 1766.0 59.0 102.0 61.0 0.0 3.0 9.0 7.0 0.0 16.0 10.0

MA0014.4_rc_shift2 (PAX5_rc)
; oligos_6nt_mkv1_m3 versus MA0014.4_rc (PAX5_rc); m=17/24; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.490046; --GGTCACGC--- ; cor=; Ncor= a 0 0 144.0 18.0 60.0 4.0 1200.0 23.0 84.0 12.0 0 0 0 c 0 0 118.0 57.0 70.0 1355.0 30.0 1243.0 34.0 1231.0 0 0 0 g 0 0 1081.0 1305.0 39.0 37.0 88.0 35.0 1276.0 151.0 0 0 0 t 0 0 69.0 32.0 1243.0 16.0 94.0 111.0 18.0 18.0 0 0 0

MA0162.5_shift0 (EGR1)
; oligos_6nt_mkv1_m3 versus MA0162.5 (EGR1); m=18/24; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.464451; mCGCCCACgC--- ; cor=; Ncor= a 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 c 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 g 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 t 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0

MA0472.2_shift0 (EGR2)
; oligos_6nt_mkv1_m3 versus MA0472.2 (EGR2); m=19/24; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.459067; mCGCCCACGCa-- ; cor=; Ncor= a 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 0 c 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 0 g 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 0 t 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0 0

MA0733.2_shift0 (EGR4)
; oligos_6nt_mkv1_m3 versus MA0733.2 (EGR4); m=20/24; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.446205; mCGCCCACGCA-- ; cor=; Ncor= a 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 0 0 c 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 0 0 g 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 0 0 t 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0 0 0

MA0732.2_shift0 (EGR3)
; oligos_6nt_mkv1_m3 versus MA0732.2 (EGR3); m=21/24; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.436964; mCGCCCMCGCA-- ; cor=; Ncor= a 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 0 0 c 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 0 0 g 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 0 0 t 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 0 0

MA0259.2_rc_shift5 (ARNT::HIF1A_rc)
; oligos_6nt_mkv1_m3 versus MA0259.2_rc (ARNT::HIF1A_rc); m=22/24; ncol2=5; w=0; offset=2; strand=R; shift=5; score=0.430633; -----CACGT--- ; cor=; Ncor= a 0 0 0 0 0 0.0 104.0 0.0 1.0 1.0 0 0 0 c 0 0 0 0 0 104.0 0.0 104.0 0.0 23.0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 103.0 2.0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 78.0 0 0 0

MA1106.2_rc_shift4 (HIF1A_rc)
; oligos_6nt_mkv1_m3 versus MA1106.2_rc (HIF1A_rc); m=23/24; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.426597; ----GCACGT--- ; cor=; Ncor= a 0 0 0 0 35.0 11.0 934.0 0.0 1.0 2.0 0 0 0 c 0 0 0 0 20.0 844.0 11.0 979.0 0.0 2.0 0 0 0 g 0 0 0 0 837.0 41.0 33.0 0.0 979.0 0.0 0 0 0 t 0 0 0 0 88.0 84.0 2.0 1.0 0.0 976.0 0 0 0

MA1713.2_shift6 (ZNF610)
; oligos_6nt_mkv1_m3 versus MA1713.2 (ZNF610); m=24/24; ncol2=10; w=0; offset=3; strand=D; shift=6; score=0.400034; ------scGCCGC ; cor=; Ncor= a 0 0 0 0 0 0 176.0 354.0 68.0 37.0 18.0 18.0 4.0 c 0 0 0 0 0 0 1222.0 1347.0 121.0 2245.0 2312.0 45.0 2357.0 g 0 0 0 0 0 0 738.0 392.0 2118.0 84.0 41.0 2312.0 21.0 t 0 0 0 0 0 0 250.0 293.0 79.0 20.0 15.0 11.0 4.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m1_shift2 ; 24 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m1_shift2 (oligos_6nt_mkv1_m1)
; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=11; shift=2; ncol=13; --CmCCGCGCCgs ; Alignment reference a 0 0 1 4 0 0 3 0 0 0 0 3 0 c 0 0 9 5 12 11 1 13 1 13 12 3 4 g 0 0 3 3 0 1 9 0 12 0 0 5 8 t 0 0 0 1 1 1 0 0 0 0 1 2 1

MA1516.2_shift2 (KLF3)
; oligos_6nt_mkv1_m1 versus MA1516.2 (KLF3); m=1/23; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.73491; --grCCrCGCCC- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0

MA2328.1_shift3 (ZBED4)
; oligos_6nt_mkv1_m1 versus MA2328.1 (ZBED4); m=2/23; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.650244; ---CcCGCyCCGC ; cor=; Ncor= a 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 c 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 g 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 t 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0

MA0742.2_rc_shift4 (KLF12_rc)
; oligos_6nt_mkv1_m1 versus MA0742.2_rc (KLF12_rc); m=3/23; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.647245; ----CCCCGCCCC ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948

MA0079.5_rc_shift2 (SP1_rc)
; oligos_6nt_mkv1_m1 versus MA0079.5_rc (SP1_rc); m=4/23; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.635638; --CyCCKCCCC-- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0

MA0746.3_shift3 (SP3)
; oligos_6nt_mkv1_m1 versus MA0746.3 (SP3); m=5/23; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.630163; ---rCCACGCCCm ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0

MA1511.2_rc_shift4 (KLF10_rc)
; oligos_6nt_mkv1_m1 versus MA1511.2_rc (KLF10_rc); m=6/23; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.622995; ----CCMCGCCCC ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427

MA1961.2_rc_shift3 (PATZ1_rc)
; oligos_6nt_mkv1_m1 versus MA1961.2_rc (PATZ1_rc); m=7/23; ncol2=11; w=0; offset=1; strand=R; shift=3; score=0.622493; ---sCCCCkCCCC ; cor=; Ncor= a 0 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 c 0 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 g 0 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 t 0 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0

MA0685.2_rc_shift2 (SP4_rc)
; oligos_6nt_mkv1_m1 versus MA0685.2_rc (SP4_rc); m=8/23; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.61701; --CyCCKCCCc-- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0

MA0516.3_rc_shift2 (SP2_rc)
; oligos_6nt_mkv1_m1 versus MA0516.3_rc (SP2_rc); m=9/23; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.612826; --cCCCGCCCC-- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0

MA0740.2_rc_shift4 (KLF14_rc)
; oligos_6nt_mkv1_m1 versus MA0740.2_rc (KLF14_rc); m=10/23; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.606231; ----CCMCGCCCm ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158

MA1515.2_shift4 (KLF2)
; oligos_6nt_mkv1_m1 versus MA1515.2 (KLF2); m=11/23; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.60007; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0

MA0741.1_shift3 (KLF16)
; oligos_6nt_mkv1_m1 versus MA0741.1 (KLF16); m=12/23; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.593659; ---gmCMCgCCCM ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0

MA1517.2_shift4 (KLF6)
; oligos_6nt_mkv1_m1 versus MA1517.2 (KLF6); m=13/23; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.587296; ----cCACRCCCm ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0

MA1959.2_rc_shift4 (KLF7_rc)
; oligos_6nt_mkv1_m1 versus MA1959.2_rc (KLF7_rc); m=14/23; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.577503; ----CcMCGCCC- ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0

MA1564.2_shift4 (SP9)
; oligos_6nt_mkv1_m1 versus MA1564.2 (SP9); m=15/23; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.574388; ----cCmCGCCCm ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0

MA0493.3_rc_shift4 (KLF1_rc)
; oligos_6nt_mkv1_m1 versus MA0493.3_rc (KLF1_rc); m=16/23; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.566292; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0

MA1513.2_shift4 (KLF15)
; oligos_6nt_mkv1_m1 versus MA1513.2 (KLF15); m=17/23; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.552397; ----cCCCGCCC- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0

MA1713.2_shift1 (ZNF610)
; oligos_6nt_mkv1_m1 versus MA1713.2 (ZNF610); m=18/23; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.55099; -scGCCGCTCC-- ; cor=; Ncor= a 0 176.0 354.0 68.0 37.0 18.0 18.0 4.0 18.0 6.0 123.0 0 0 c 0 1222.0 1347.0 121.0 2245.0 2312.0 45.0 2357.0 34.0 2315.0 1976.0 0 0 g 0 738.0 392.0 2118.0 84.0 41.0 2312.0 21.0 45.0 62.0 186.0 0 0 t 0 250.0 293.0 79.0 20.0 15.0 11.0 4.0 2289.0 3.0 101.0 0 0

MA1512.2_shift4 (KLF11)
; oligos_6nt_mkv1_m1 versus MA1512.2 (KLF11); m=19/23; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.547314; ----cCACGCCCm ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0

MA1650.2_shift4 (ZBTB14)
; oligos_6nt_mkv1_m1 versus MA1650.2 (ZBTB14); m=20/23; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.519051; ----CCGCGCAC- ; cor=; Ncor= a 0 0 0 0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 0 c 0 0 0 0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 0 g 0 0 0 0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 0 t 0 0 0 0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 0

MA0747.2_shift4 (SP8)
; oligos_6nt_mkv1_m1 versus MA0747.2 (SP8); m=21/23; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.494519; ----mCACgCCCm ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0

MA0162.5_shift0 (EGR1)
; oligos_6nt_mkv1_m1 versus MA0162.5 (EGR1); m=22/23; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.457777; mCGCCCACgC--- ; cor=; Ncor= a 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 c 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 g 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 t 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0

MA1727.2_shift5 (ZNF417)
; oligos_6nt_mkv1_m1 versus MA1727.2 (ZNF417); m=23/23; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.453595; -----GGCGCCA- ; cor=; Ncor= a 0 0 0 0 0 1.0 1.0 7.0 1.0 1.0 31.0 984.0 0 c 0 0 0 0 0 1.0 1.0 936.0 1.0 990.0 954.0 13.0 0 g 0 0 0 0 0 996.0 996.0 1.0 996.0 1.0 1.0 1.0 0 t 0 0 0 0 0 1.0 1.0 55.0 1.0 7.0 13.0 1.0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m1_shift2 ; 24 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m1_shift2 (oligos_7nt_mkv1_m1)
; oligos_7nt_mkv1_m1; m=0 (reference); ncol1=11; shift=2; ncol=13; --CmCCGCGCCgs ; Alignment reference a 0 0 1 4 0 0 3 0 0 0 0 3 0 c 0 0 9 5 12 11 1 13 1 13 12 3 4 g 0 0 3 3 0 1 9 0 12 0 0 5 8 t 0 0 0 1 1 1 0 0 0 0 1 2 1

MA1516.2_shift2 (KLF3)
; oligos_7nt_mkv1_m1 versus MA1516.2 (KLF3); m=1/23; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.73491; --grCCrCGCCC- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0

MA2328.1_shift3 (ZBED4)
; oligos_7nt_mkv1_m1 versus MA2328.1 (ZBED4); m=2/23; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.650244; ---CcCGCyCCGC ; cor=; Ncor= a 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 c 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 g 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 t 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0

MA0742.2_rc_shift4 (KLF12_rc)
; oligos_7nt_mkv1_m1 versus MA0742.2_rc (KLF12_rc); m=3/23; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.647245; ----CCCCGCCCC ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948

MA0079.5_rc_shift2 (SP1_rc)
; oligos_7nt_mkv1_m1 versus MA0079.5_rc (SP1_rc); m=4/23; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.635638; --CyCCKCCCC-- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0

MA0746.3_shift3 (SP3)
; oligos_7nt_mkv1_m1 versus MA0746.3 (SP3); m=5/23; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.630163; ---rCCACGCCCm ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0

MA1511.2_rc_shift4 (KLF10_rc)
; oligos_7nt_mkv1_m1 versus MA1511.2_rc (KLF10_rc); m=6/23; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.622995; ----CCMCGCCCC ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427

MA1961.2_rc_shift3 (PATZ1_rc)
; oligos_7nt_mkv1_m1 versus MA1961.2_rc (PATZ1_rc); m=7/23; ncol2=11; w=0; offset=1; strand=R; shift=3; score=0.622493; ---sCCCCkCCCC ; cor=; Ncor= a 0 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 c 0 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 g 0 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 t 0 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0

MA0685.2_rc_shift2 (SP4_rc)
; oligos_7nt_mkv1_m1 versus MA0685.2_rc (SP4_rc); m=8/23; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.61701; --CyCCKCCCc-- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0

MA0516.3_rc_shift2 (SP2_rc)
; oligos_7nt_mkv1_m1 versus MA0516.3_rc (SP2_rc); m=9/23; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.612826; --cCCCGCCCC-- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0

MA0740.2_rc_shift4 (KLF14_rc)
; oligos_7nt_mkv1_m1 versus MA0740.2_rc (KLF14_rc); m=10/23; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.606231; ----CCMCGCCCm ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158

MA1515.2_shift4 (KLF2)
; oligos_7nt_mkv1_m1 versus MA1515.2 (KLF2); m=11/23; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.60007; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0

MA0741.1_shift3 (KLF16)
; oligos_7nt_mkv1_m1 versus MA0741.1 (KLF16); m=12/23; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.593659; ---gmCMCgCCCM ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0

MA1517.2_shift4 (KLF6)
; oligos_7nt_mkv1_m1 versus MA1517.2 (KLF6); m=13/23; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.587296; ----cCACRCCCm ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0

MA1959.2_rc_shift4 (KLF7_rc)
; oligos_7nt_mkv1_m1 versus MA1959.2_rc (KLF7_rc); m=14/23; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.577503; ----CcMCGCCC- ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0

MA1564.2_shift4 (SP9)
; oligos_7nt_mkv1_m1 versus MA1564.2 (SP9); m=15/23; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.574388; ----cCmCGCCCm ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0

MA0493.3_rc_shift4 (KLF1_rc)
; oligos_7nt_mkv1_m1 versus MA0493.3_rc (KLF1_rc); m=16/23; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.566292; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0

MA1513.2_shift4 (KLF15)
; oligos_7nt_mkv1_m1 versus MA1513.2 (KLF15); m=17/23; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.552397; ----cCCCGCCC- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0

MA1713.2_shift1 (ZNF610)
; oligos_7nt_mkv1_m1 versus MA1713.2 (ZNF610); m=18/23; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.55099; -scGCCGCTCC-- ; cor=; Ncor= a 0 176.0 354.0 68.0 37.0 18.0 18.0 4.0 18.0 6.0 123.0 0 0 c 0 1222.0 1347.0 121.0 2245.0 2312.0 45.0 2357.0 34.0 2315.0 1976.0 0 0 g 0 738.0 392.0 2118.0 84.0 41.0 2312.0 21.0 45.0 62.0 186.0 0 0 t 0 250.0 293.0 79.0 20.0 15.0 11.0 4.0 2289.0 3.0 101.0 0 0

MA1512.2_shift4 (KLF11)
; oligos_7nt_mkv1_m1 versus MA1512.2 (KLF11); m=19/23; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.547314; ----cCACGCCCm ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0

MA1650.2_shift4 (ZBTB14)
; oligos_7nt_mkv1_m1 versus MA1650.2 (ZBTB14); m=20/23; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.519051; ----CCGCGCAC- ; cor=; Ncor= a 0 0 0 0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 0 c 0 0 0 0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 0 g 0 0 0 0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 0 t 0 0 0 0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 0

MA0747.2_shift4 (SP8)
; oligos_7nt_mkv1_m1 versus MA0747.2 (SP8); m=21/23; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.494519; ----mCACgCCCm ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0

MA0162.5_shift0 (EGR1)
; oligos_7nt_mkv1_m1 versus MA0162.5 (EGR1); m=22/23; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.457777; mCGCCCACgC--- ; cor=; Ncor= a 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 c 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 g 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 t 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0

MA1727.2_shift5 (ZNF417)
; oligos_7nt_mkv1_m1 versus MA1727.2 (ZNF417); m=23/23; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.453595; -----GGCGCCA- ; cor=; Ncor= a 0 0 0 0 0 1.0 1.0 7.0 1.0 1.0 31.0 984.0 0 c 0 0 0 0 0 1.0 1.0 936.0 1.0 990.0 954.0 13.0 0 g 0 0 0 0 0 996.0 996.0 1.0 996.0 1.0 1.0 1.0 0 t 0 0 0 0 0 1.0 1.0 55.0 1.0 7.0 13.0 1.0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m2_shift2 ; 71 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m2_shift2 (oligos_7nt_mkv1_m2)
; oligos_7nt_mkv1_m2; m=0 (reference); ncol1=11; shift=2; ncol=13; --sdGTAATCAkr ; Alignment reference a 0 0 2 3 1 2 10 9 0 0 10 1 4 c 0 0 3 0 0 1 0 0 1 10 0 2 0 g 0 0 4 3 9 0 0 0 0 0 0 3 4 t 0 0 1 4 0 7 0 1 9 0 0 4 2

MA0593.2_shift3 (FOXP2)
; oligos_7nt_mkv1_m2 versus MA0593.2 (FOXP2); m=1/70; ncol2=9; w=0; offset=1; strand=D; shift=3; score=0.626547; ---wGTAAACAr- ; cor=; Ncor= a 0 0 0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 0 c 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 0 g 0 0 0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 0 t 0 0 0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 0

MA1720.2_rc_shift0 (ZNF85_rc)
; oligos_7nt_mkv1_m2 versus MA1720.2_rc (ZNF85_rc); m=2/70; ncol2=12; w=-2; offset=-2; strand=R; shift=0; score=0.578792; TGmwGtAATCTy- ; cor=; Ncor= a 62.0 14.0 227.0 219.0 1.0 11.0 569.0 565.0 4.0 4.0 21.0 35.0 0 c 38.0 14.0 308.0 27.0 3.0 42.0 3.0 12.0 5.0 571.0 71.0 328.0 0 g 34.0 544.0 21.0 15.0 578.0 136.0 5.0 2.0 2.0 5.0 4.0 66.0 0 t 450.0 12.0 28.0 323.0 2.0 395.0 7.0 5.0 573.0 4.0 488.0 155.0 0

MA0030.2_shift3 (FOXF2)
; oligos_7nt_mkv1_m2 versus MA0030.2 (FOXF2); m=3/70; ncol2=9; w=0; offset=1; strand=D; shift=3; score=0.57451; ---sRTAAACAa- ; cor=; Ncor= a 0 0 0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 0 c 0 0 0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 0 g 0 0 0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0 t 0 0 0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 0

MA2118.1_shift3 (FOXS1)
; oligos_7nt_mkv1_m2 versus MA2118.1 (FOXS1); m=4/70; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.563144; ---tGTAAACA-- ; cor=; Ncor= a 0 0 0 66.0 36.0 13.0 345.0 345.0 361.0 9.0 356.0 0 0 c 0 0 0 20.0 8.0 15.0 15.0 16.0 3.0 322.0 5.0 0 0 g 0 0 0 49.0 323.0 12.0 5.0 8.0 5.0 7.0 3.0 0 0 t 0 0 0 239.0 7.0 334.0 9.0 5.0 5.0 36.0 10.0 0 0

MA0047.4_shift3 (FOXA2)
; oligos_7nt_mkv1_m2 versus MA0047.4 (FOXA2); m=5/70; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.559768; ---wGTAAACA-- ; cor=; Ncor= a 0 0 0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 0 0 c 0 0 0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 0 0 g 0 0 0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 0 0 t 0 0 0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 0 0

MA0148.5_shift4 (FOXA1)
; oligos_7nt_mkv1_m2 versus MA0148.5 (FOXA1); m=6/70; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.557577; ----GTAAACAT- ; cor=; Ncor= a 0 0 0 0 23286.0 11061.0 297679.0 294900.0 312906.0 7396.0 308904.0 42299.0 0 c 0 0 0 0 5935.0 13932.0 14648.0 13410.0 2452.0 272943.0 3674.0 23038.0 0 g 0 0 0 0 281612.0 6092.0 5243.0 3774.0 3652.0 4805.0 3226.0 27283.0 0 t 0 0 0 0 11970.0 291718.0 5233.0 10719.0 3793.0 37659.0 6999.0 230183.0 0

MA2339.1_shift4 (Nanog)
; oligos_7nt_mkv1_m2 versus MA2339.1 (Nanog); m=7/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.556959; ----GCAATCA-- ; cor=; Ncor= a 0 0 0 0 480.0 143.0 6992.0 7959.0 235.0 348.0 8076.0 0 0 c 0 0 0 0 164.0 7298.0 400.0 206.0 96.0 7421.0 131.0 0 0 g 0 0 0 0 7830.0 93.0 365.0 196.0 124.0 149.0 180.0 0 0 t 0 0 0 0 190.0 1130.0 907.0 303.0 8209.0 746.0 277.0 0 0

MA1607.2_shift1 (Foxl2)
; oligos_7nt_mkv1_m2 versus MA1607.2 (Foxl2); m=8/70; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.555539; -waTGTAAACA-- ; cor=; Ncor= a 0 6433.0 11158.0 2985.0 2607.0 1097.0 17227.0 17212.0 17146.0 282.0 15623.0 0 0 c 0 1576.0 2051.0 896.0 367.0 301.0 558.0 336.0 216.0 15698.0 807.0 0 0 g 0 1599.0 2107.0 1371.0 14648.0 419.0 112.0 187.0 411.0 151.0 401.0 0 0 t 0 8493.0 2785.0 12849.0 479.0 16284.0 204.0 366.0 328.0 1970.0 1270.0 0 0

MA0613.1_shift4 (FOXG1)
; oligos_7nt_mkv1_m2 versus MA0613.1 (FOXG1); m=9/70; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.540327; ----rTAAACAw- ; cor=; Ncor= a 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 c 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 g 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 t 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0

MA1489.1_shift4 (FOXN3)
; oligos_7nt_mkv1_m2 versus MA1489.1 (FOXN3); m=10/70; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.515454; ----GTAAACAA- ; cor=; Ncor= a 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 c 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 g 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 t 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0

MA0468.1_shift0 (DUX4)
; oligos_7nt_mkv1_m2 versus MA0468.1 (DUX4); m=11/70; ncol2=11; w=-2; offset=-2; strand=D; shift=0; score=0.510443; TAAyyyAATCA-- ; cor=; Ncor= a 7297.0 37001.0 38217.0 5228.0 0.0 0.0 35278.0 38217.0 0.0 0.0 33798.0 0 0 c 2495.0 0.0 0.0 11675.0 16478.0 13951.0 2889.0 0.0 0.0 37408.0 0.0 0 0 g 979.0 1216.0 0.0 2002.0 4981.0 6127.0 0.0 0.0 0.0 0.0 0.0 0 0 t 27446.0 0.0 0.0 19312.0 16758.0 18139.0 50.0 0.0 38217.0 809.0 4419.0 0 0

MA0031.2_shift4 (FOXD1)
; oligos_7nt_mkv1_m2 versus MA0031.2 (FOXD1); m=12/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.50482; ----GTAAACA-- ; cor=; Ncor= a 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 0 0 c 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 0 0 g 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 0 0 t 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 0 0

MA0480.3_shift4 (Foxo1)
; oligos_7nt_mkv1_m2 versus MA0480.3 (Foxo1); m=13/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.500111; ----GTAAACA-- ; cor=; Ncor= a 0 0 0 0 1411.0 945.0 12408.0 12663.0 12972.0 293.0 13332.0 0 0 c 0 0 0 0 481.0 555.0 934.0 849.0 387.0 12710.0 277.0 0 0 g 0 0 0 0 11670.0 1025.0 478.0 384.0 508.0 356.0 153.0 0 0 t 0 0 0 0 554.0 11591.0 296.0 220.0 249.0 757.0 354.0 0 0

MA0157.4_shift4 (Foxo3)
; oligos_7nt_mkv1_m2 versus MA0157.4 (Foxo3); m=14/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.498224; ----GTAAACA-- ; cor=; Ncor= a 0 0 0 0 3470.0 1546.0 22240.0 22288.0 22551.0 403.0 22141.0 0 0 c 0 0 0 0 590.0 435.0 968.0 803.0 483.0 21237.0 587.0 0 0 g 0 0 0 0 19202.0 1199.0 328.0 333.0 464.0 361.0 361.0 0 0 t 0 0 0 0 650.0 20732.0 376.0 488.0 414.0 1911.0 823.0 0 0

MA0852.3_shift4 (FOXK1)
; oligos_7nt_mkv1_m2 versus MA0852.3 (FOXK1); m=15/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.498071; ----GTAAACA-- ; cor=; Ncor= a 0 0 0 0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 0 0 c 0 0 0 0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 0 0 g 0 0 0 0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 0 0 t 0 0 0 0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 0 0

MA1103.3_shift4 (FOXK2)
; oligos_7nt_mkv1_m2 versus MA1103.3 (FOXK2); m=16/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.494513; ----GTAAACA-- ; cor=; Ncor= a 0 0 0 0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 0 0 c 0 0 0 0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 0 0 g 0 0 0 0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 0 0 t 0 0 0 0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 0 0

MA0042.2_shift4 (FOXI1)
; oligos_7nt_mkv1_m2 versus MA0042.2 (FOXI1); m=17/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.493912; ----GTAAACA-- ; cor=; Ncor= a 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 c 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 g 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 t 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0

MA2117.1_shift4 (FOXP4)
; oligos_7nt_mkv1_m2 versus MA2117.1 (FOXP4); m=18/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.492996; ----GTAAACA-- ; cor=; Ncor= a 0 0 0 0 2224.0 543.0 19122.0 19613.0 20280.0 379.0 20230.0 0 0 c 0 0 0 0 834.0 793.0 1545.0 1330.0 419.0 18349.0 443.0 0 0 g 0 0 0 0 17315.0 539.0 534.0 368.0 550.0 493.0 218.0 0 0 t 0 0 0 0 1294.0 19792.0 466.0 356.0 418.0 2446.0 776.0 0 0

MA0850.1_shift4 (FOXP3)
; oligos_7nt_mkv1_m2 versus MA0850.1 (FOXP3); m=19/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.49252; ----rTAAACA-- ; cor=; Ncor= a 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 c 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 g 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 t 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0

MA0481.4_shift4 (FOXP1)
; oligos_7nt_mkv1_m2 versus MA0481.4 (FOXP1); m=20/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.491928; ----GTAAACA-- ; cor=; Ncor= a 0 0 0 0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 0 0 c 0 0 0 0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 0 0 g 0 0 0 0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 0 0 t 0 0 0 0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 0 0

MA0706.2_shift4 (MEOX2)
; oligos_7nt_mkv1_m2 versus MA0706.2 (MEOX2); m=21/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.491919; ----sTaATtA-- ; cor=; Ncor= a 0 0 0 0 3262.0 1469.0 23930.0 23930.0 76.0 1152.0 23930.0 0 0 c 0 0 0 0 8942.0 5055.0 8988.0 788.0 38.0 6039.0 359.0 0 0 g 0 0 0 0 14987.0 642.0 3016.0 272.0 169.0 4974.0 4099.0 0 0 t 0 0 0 0 2754.0 23930.0 900.0 492.0 23930.0 23930.0 1032.0 0 0

MA1683.2_shift4 (FOXA3)
; oligos_7nt_mkv1_m2 versus MA1683.2 (FOXA3); m=22/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.491177; ----GTAAACA-- ; cor=; Ncor= a 0 0 0 0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 0 0 c 0 0 0 0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 0 0 g 0 0 0 0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 0 0 t 0 0 0 0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 0 0

MA0849.1_shift4 (FOXO6)
; oligos_7nt_mkv1_m2 versus MA0849.1 (FOXO6); m=23/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.490665; ----GTAAACA-- ; cor=; Ncor= a 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 c 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 g 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 t 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0

MA1606.2_shift4 (Foxf1)
; oligos_7nt_mkv1_m2 versus MA1606.2 (Foxf1); m=24/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.481108; ----rTAAACA-- ; cor=; Ncor= a 0 0 0 0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 0 0 c 0 0 0 0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 0 0 g 0 0 0 0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 0 0 t 0 0 0 0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 0 0

MA0848.1_shift4 (FOXO4)
; oligos_7nt_mkv1_m2 versus MA0848.1 (FOXO4); m=25/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.480127; ----GTAAACA-- ; cor=; Ncor= a 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 c 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 g 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 t 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0

MA0483.2_shift5 (Gfi1B)
; oligos_7nt_mkv1_m2 versus MA0483.2 (Gfi1B); m=26/70; ncol2=10; w=0; offset=3; strand=D; shift=5; score=0.476822; -----aAATCwCw ; cor=; Ncor= a 0 0 0 0 0 1124.0 1761.0 1759.0 0.0 0.0 1033.0 61.0 1116.0 c 0 0 0 0 0 438.0 0.0 0.0 338.0 1761.0 21.0 1312.0 0.0 g 0 0 0 0 0 104.0 0.0 2.0 28.0 0.0 0.0 388.0 1.0 t 0 0 0 0 0 95.0 0.0 0.0 1395.0 0.0 707.0 0.0 644.0

MA0679.3_shift5 (ONECUT1)
; oligos_7nt_mkv1_m2 versus MA0679.3 (ONECUT1); m=27/70; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.476239; -----aAATCAAT ; cor=; Ncor= a 0 0 0 0 0 37926.0 52146.0 60015.0 482.0 1345.0 59595.0 60870.0 225.0 c 0 0 0 0 0 7555.0 1011.0 358.0 294.0 60181.0 438.0 247.0 356.0 g 0 0 0 0 0 6149.0 7794.0 1166.0 241.0 278.0 1226.0 366.0 162.0 t 0 0 0 0 0 10589.0 1268.0 680.0 61202.0 415.0 960.0 736.0 61476.0

MA2093.1_shift4 (HOXB1)
; oligos_7nt_mkv1_m2 versus MA2093.1 (HOXB1); m=28/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.473009; ----sTAATTA-- ; cor=; Ncor= a 0 0 0 0 71.0 0.0 2003.0 2003.0 0.0 0.0 2003.0 0 0 c 0 0 0 0 705.0 412.0 450.0 0.0 0.0 253.0 47.0 0 0 g 0 0 0 0 1298.0 0.0 307.0 0.0 1.0 262.0 633.0 0 0 t 0 0 0 0 0.0 2003.0 0.0 0.0 2003.0 2003.0 0.0 0 0

MA1496.2_rc_shift5 (HOXA4_rc)
; oligos_7nt_mkv1_m2 versus MA1496.2_rc (HOXA4_rc); m=29/70; ncol2=7; w=0; offset=3; strand=R; shift=5; score=0.472582; -----TAATkRy- ; cor=; Ncor= a 0 0 0 0 0 0.0 2454.0 2454.0 0.0 0.0 2454.0 94.0 0 c 0 0 0 0 0 260.0 171.0 39.0 684.0 176.0 0.0 1365.0 0 g 0 0 0 0 0 146.0 173.0 0.0 0.0 1561.0 967.0 397.0 0 t 0 0 0 0 0 2454.0 0.0 0.0 2454.0 893.0 0.0 1089.0 0

MA0038.3_shift5 (GFI1)
; oligos_7nt_mkv1_m2 versus MA0038.3 (GFI1); m=30/70; ncol2=11; w=0; offset=3; strand=D; shift=5; score=0.471859; -----mAATCACd ; cor=; Ncor= a 0 0 0 0 0 19146.0 30168.0 30150.0 0.0 15.0 29255.0 838.0 7748.0 c 0 0 0 0 0 10155.0 2.0 0.0 0.0 30139.0 0.0 27769.0 54.0 g 0 0 0 0 0 812.0 0.0 0.0 0.0 0.0 0.0 3888.0 8349.0 t 0 0 0 0 0 565.0 0.0 1.0 30161.0 10.0 1594.0 0.0 13996.0

MA1501.2_shift4 (HOXB7)
; oligos_7nt_mkv1_m2 versus MA1501.2 (HOXB7); m=31/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.470116; ----GyAATTA-- ; cor=; Ncor= a 0 0 0 0 0.0 0.0 828.0 828.0 0.0 79.0 828.0 0 0 c 0 0 0 0 0.0 359.0 222.0 29.0 0.0 3.0 0.0 0 0 g 0 0 0 0 828.0 51.0 0.0 0.0 31.0 0.0 151.0 0 0 t 0 0 0 0 87.0 828.0 0.0 0.0 828.0 828.0 0.0 0 0

MA1549.2_shift5 (POU6F1)
; oligos_7nt_mkv1_m2 versus MA1549.2 (POU6F1); m=32/70; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.469841; -----TAATGAG- ; cor=; Ncor= a 0 0 0 0 0 164.0 6413.0 6413.0 0.0 67.0 6413.0 314.0 0 c 0 0 0 0 0 273.0 179.0 0.0 0.0 206.0 96.0 851.0 0 g 0 0 0 0 0 10.0 255.0 0.0 298.0 5799.0 0.0 6413.0 0 t 0 0 0 0 0 6413.0 0.0 0.0 6413.0 615.0 411.0 1855.0 0

MA0793.2_rc_shift5 (POU6F2_rc)
; oligos_7nt_mkv1_m2 versus MA0793.2_rc (POU6F2_rc); m=33/70; ncol2=9; w=0; offset=3; strand=R; shift=5; score=0.468459; -----TAATkAGs ; cor=; Ncor= a 0 0 0 0 0 53.0 3297.0 3297.0 21.0 81.0 3297.0 257.0 266.0 c 0 0 0 0 0 22.0 41.0 0.0 0.0 50.0 114.0 219.0 2116.0 g 0 0 0 0 0 27.0 12.0 4.0 75.0 2105.0 64.0 3297.0 1181.0 t 0 0 0 0 0 3297.0 0.0 0.0 3297.0 1192.0 75.0 239.0 714.0

MA0661.2_rc_shift5 (MEOX1_rc)
; oligos_7nt_mkv1_m2 versus MA0661.2_rc (MEOX1_rc); m=34/70; ncol2=7; w=0; offset=3; strand=R; shift=5; score=0.467041; -----TAATTAs- ; cor=; Ncor= a 0 0 0 0 0 6.0 3000.0 3000.0 3.0 39.0 3000.0 115.0 0 c 0 0 0 0 0 338.0 328.0 0.0 2.0 151.0 53.0 1363.0 0 g 0 0 0 0 0 0.0 242.0 29.0 0.0 848.0 406.0 1637.0 0 t 0 0 0 0 0 3000.0 14.0 8.0 3000.0 3000.0 64.0 150.0 0

MA0712.3_rc_shift5 (OTX2_rc)
; oligos_7nt_mkv1_m2 versus MA0712.3_rc (OTX2_rc); m=35/70; ncol2=7; w=0; offset=3; strand=R; shift=5; score=0.465321; -----TAATCCy- ; cor=; Ncor= a 0 0 0 0 0 3943.0 115588.0 118529.0 1342.0 2299.0 2676.0 22388.0 0 c 0 0 0 0 0 1302.0 1407.0 787.0 706.0 113842.0 111741.0 55814.0 0 g 0 0 0 0 0 636.0 1771.0 598.0 2220.0 1620.0 827.0 5322.0 0 t 0 0 0 0 0 114798.0 1913.0 765.0 116411.0 2918.0 5435.0 37155.0 0

MA0680.3_shift5 (Pax7)
; oligos_7nt_mkv1_m2 versus MA0680.3 (Pax7); m=36/70; ncol2=10; w=0; offset=3; strand=D; shift=5; score=0.464388; -----tAATCAAT ; cor=; Ncor= a 0 0 0 0 0 9362.0 38618.0 39010.0 872.0 1152.0 35354.0 38882.0 1086.0 c 0 0 0 0 0 3522.0 858.0 674.0 1092.0 31089.0 1721.0 542.0 430.0 g 0 0 0 0 0 3149.0 904.0 719.0 831.0 1356.0 3677.0 1095.0 494.0 t 0 0 0 0 0 25396.0 1049.0 1026.0 38634.0 7832.0 677.0 910.0 39419.0

MA0033.2_shift4 (FOXL1)
; oligos_7nt_mkv1_m2 versus MA0033.2 (FOXL1); m=37/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.462763; ----rTAAACA-- ; cor=; Ncor= a 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 c 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 g 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 t 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0

MA2119.1_rc_shift5 (HOXA3_rc)
; oligos_7nt_mkv1_m2 versus MA2119.1_rc (HOXA3_rc); m=38/70; ncol2=7; w=0; offset=3; strand=R; shift=5; score=0.45714; -----TAATKAs- ; cor=; Ncor= a 0 0 0 0 0 0.0 2540.0 2540.0 0.0 0.0 2540.0 138.0 0 c 0 0 0 0 0 361.0 517.0 0.0 0.0 10.0 0.0 1294.0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1022.0 502.0 1246.0 0 t 0 0 0 0 0 2540.0 0.0 0.0 2540.0 2540.0 0.0 93.0 0

MA0707.3_rc_shift5 (MNX1_rc)
; oligos_7nt_mkv1_m2 versus MA0707.3_rc (MNX1_rc); m=39/70; ncol2=6; w=0; offset=3; strand=R; shift=5; score=0.455658; -----TAATyr-- ; cor=; Ncor= a 0 0 0 0 0 0.0 19178.0 19178.0 0.0 0.0 11058.0 0 0 c 0 0 0 0 0 0.0 797.0 0.0 0.0 16561.0 0.0 0 0 g 0 0 0 0 0 0.0 2158.0 0.0 0.0 3243.0 8120.0 0 0 t 0 0 0 0 0 19178.0 0.0 0.0 19178.0 19178.0 0.0 0 0

MA0893.3_rc_shift5 (GSX2_rc)
; oligos_7nt_mkv1_m2 versus MA0893.3_rc (GSX2_rc); m=40/70; ncol2=7; w=0; offset=3; strand=R; shift=5; score=0.454407; -----TAATkrs- ; cor=; Ncor= a 0 0 0 0 0 20.0 4998.0 4998.0 0.0 29.0 4998.0 0.0 0 c 0 0 0 0 0 1005.0 77.0 0.0 708.0 95.0 400.0 2721.0 0 g 0 0 0 0 0 0.0 0.0 121.0 0.0 2223.0 2611.0 2277.0 0 t 0 0 0 0 0 4998.0 0.0 0.0 4998.0 2775.0 503.0 816.0 0

MA0887.2_rc_shift5 (EVX1_rc)
; oligos_7nt_mkv1_m2 versus MA0887.2_rc (EVX1_rc); m=41/70; ncol2=6; w=0; offset=3; strand=R; shift=5; score=0.45379; -----TAATta-- ; cor=; Ncor= a 0 0 0 0 0 172.0 7894.0 7894.0 0.0 358.0 7894.0 0 0 c 0 0 0 0 0 725.0 171.0 267.0 236.0 1885.0 269.0 0 0 g 0 0 0 0 0 14.0 463.0 67.0 29.0 1752.0 2343.0 0 0 t 0 0 0 0 0 7894.0 232.0 0.0 7894.0 3899.0 1196.0 0 0

MA0883.2_rc_shift5 (Dmbx1_rc)
; oligos_7nt_mkv1_m2 versus MA0883.2_rc (Dmbx1_rc); m=42/70; ncol2=10; w=0; offset=3; strand=R; shift=5; score=0.453081; -----TAATCCkk ; cor=; Ncor= a 0 0 0 0 0 3.0 98.0 99.0 0.0 0.0 0.0 3.0 21.0 c 0 0 0 0 0 0.0 0.0 0.0 0.0 99.0 93.0 20.0 18.0 g 0 0 0 0 0 0.0 1.0 0.0 6.0 1.0 1.0 50.0 36.0 t 0 0 0 0 0 97.0 1.0 0.0 94.0 0.0 6.0 28.0 25.0

MA0888.2_rc_shift5 (EVX2_rc)
; oligos_7nt_mkv1_m2 versus MA0888.2_rc (EVX2_rc); m=43/70; ncol2=6; w=0; offset=3; strand=R; shift=5; score=0.452596; -----TAATtA-- ; cor=; Ncor= a 0 0 0 0 0 446.0 20419.0 20419.0 0.0 752.0 20419.0 0 0 c 0 0 0 0 0 1559.0 445.0 702.0 881.0 4541.0 969.0 0 0 g 0 0 0 0 0 0.0 863.0 166.0 156.0 5018.0 5669.0 0 0 t 0 0 0 0 0 20419.0 303.0 5.0 20419.0 10108.0 2541.0 0 0

MA1519.2_shift4 (LHX5)
; oligos_7nt_mkv1_m2 versus MA1519.2 (LHX5); m=44/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.449875; ----sYAATTA-- ; cor=; Ncor= a 0 0 0 0 394.0 0.0 7142.0 7142.0 0.0 0.0 7142.0 0 0 c 0 0 0 0 3420.0 2093.0 187.0 0.0 0.0 144.0 0.0 0 0 g 0 0 0 0 3721.0 0.0 0.0 0.0 0.0 28.0 160.0 0 0 t 0 0 0 0 1215.0 5049.0 0.0 0.0 7142.0 7142.0 0.0 0 0

MA1497.2_shift4 (HOXA6)
; oligos_7nt_mkv1_m2 versus MA1497.2 (HOXA6); m=45/70; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.445907; ----gymATTA-- ; cor=; Ncor= a 0 0 0 0 1337.0 87.0 7201.0 7201.0 0.0 1911.0 7201.0 0 0 c 0 0 0 0 1725.0 2967.0 3768.0 745.0 0.0 233.0 94.0 0 0 g 0 0 0 0 7201.0 100.0 833.0 908.0 0.0 553.0 502.0 0 0 t 0 0 0 0 1605.0 4234.0 1482.0 11.0 7201.0 7201.0 663.0 0 0

MA0710.2_rc_shift5 (NOTO_rc)
; oligos_7nt_mkv1_m2 versus MA0710.2_rc (NOTO_rc); m=46/70; ncol2=7; w=0; offset=3; strand=R; shift=5; score=0.44555; -----TAATKar- ; cor=; Ncor= a 0 0 0 0 0 1904.0 21405.0 21405.0 0.0 139.0 21405.0 7419.0 0 c 0 0 0 0 0 2057.0 422.0 0.0 0.0 0.0 573.0 617.0 0 g 0 0 0 0 0 0.0 62.0 0.0 0.0 6310.0 4001.0 13986.0 0 t 0 0 0 0 0 21405.0 374.0 0.0 21405.0 15096.0 7097.0 774.0 0

MA0705.2_shift5 (Lhx8)
; oligos_7nt_mkv1_m2 versus MA0705.2 (Lhx8); m=47/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.432758; -----YAATYR-- ; cor=; Ncor= a 0 0 0 0 0 0.0 5092.0 5092.0 0.0 0.0 5092.0 0 0 c 0 0 0 0 0 1996.0 160.0 0.0 0.0 2083.0 0.0 0 0 g 0 0 0 0 0 0.0 1670.0 0.0 0.0 88.0 1929.0 0 0 t 0 0 0 0 0 5092.0 0.0 0.0 5092.0 5092.0 0.0 0 0

MA0711.2_shift5 (OTX1)
; oligos_7nt_mkv1_m2 versus MA0711.2 (OTX1); m=48/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.423947; -----TAATCc-- ; cor=; Ncor= a 0 0 0 0 0 745.0 23441.0 23441.0 243.0 647.0 789.0 0 0 c 0 0 0 0 0 90.0 0.0 0.0 0.0 23441.0 23441.0 0 0 g 0 0 0 0 0 0.0 254.0 0.0 3160.0 659.0 8662.0 0 0 t 0 0 0 0 0 23441.0 544.0 0.0 23441.0 378.0 3363.0 0 0

MA0900.3_rc_shift5 (HOXA2_rc)
; oligos_7nt_mkv1_m2 versus MA0900.3_rc (HOXA2_rc); m=49/70; ncol2=6; w=0; offset=3; strand=R; shift=5; score=0.42148; -----TAATKA-- ; cor=; Ncor= a 0 0 0 0 0 0.0 56949.0 56949.0 0.0 0.0 56949.0 0 0 c 0 0 0 0 0 2052.0 0.0 0.0 0.0 290.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 17275.0 3636.0 0 0 t 0 0 0 0 0 56949.0 0.0 0.0 56949.0 39674.0 0.0 0 0

MA0027.3_shift5 (EN1)
; oligos_7nt_mkv1_m2 versus MA0027.3 (EN1); m=50/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.420846; -----yAATTA-- ; cor=; Ncor= a 0 0 0 0 0 104.0 2891.0 2891.0 0.0 57.0 2891.0 0 0 c 0 0 0 0 0 1328.0 99.0 28.0 0.0 483.0 0.0 0 0 g 0 0 0 0 0 5.0 71.0 0.0 0.0 162.0 30.0 0 0 t 0 0 0 0 0 1562.0 0.0 0.0 2891.0 2891.0 132.0 0 0

MA0681.3_shift5 (PHOX2B)
; oligos_7nt_mkv1_m2 versus MA0681.3 (PHOX2B); m=51/70; ncol2=12; w=0; offset=3; strand=D; shift=5; score=0.41892; -----TAATCAAA ; cor=; Ncor= a 0 0 0 0 0 10344.0 42696.0 51239.0 1742.0 2451.0 43074.0 48550.0 50675.0 c 0 0 0 0 0 2748.0 1935.0 496.0 615.0 36619.0 1895.0 1453.0 451.0 g 0 0 0 0 0 2542.0 2289.0 508.0 467.0 1873.0 588.0 1418.0 761.0 t 0 0 0 0 0 37602.0 6316.0 993.0 50412.0 12293.0 7679.0 1815.0 1349.0

MA0891.2_shift5 (GSC2)
; oligos_7nt_mkv1_m2 versus MA0891.2 (GSC2); m=52/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.418439; -----TAATCc-- ; cor=; Ncor= a 0 0 0 0 0 116.0 2016.0 2016.0 0.0 255.0 182.0 0 0 c 0 0 0 0 0 0.0 87.0 11.0 41.0 2016.0 2016.0 0 0 g 0 0 0 0 0 0.0 56.0 0.0 145.0 179.0 422.0 0 0 t 0 0 0 0 0 2016.0 201.0 132.0 2016.0 204.0 439.0 0 0

MA1495.2_shift5 (HOXA1)
; oligos_7nt_mkv1_m2 versus MA1495.2 (HOXA1); m=53/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.417901; -----TAATtA-- ; cor=; Ncor= a 0 0 0 0 0 0.0 7406.0 7406.0 0.0 0.0 7406.0 0 0 c 0 0 0 0 0 1546.0 2083.0 0.0 0.0 1310.0 0.0 0 0 g 0 0 0 0 0 0.0 1244.0 0.0 0.0 2265.0 1576.0 0 0 t 0 0 0 0 0 7406.0 0.0 0.0 7406.0 7406.0 0.0 0 0

MA0648.2_shift5 (GSC)
; oligos_7nt_mkv1_m2 versus MA0648.2 (GSC); m=54/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.415256; -----TAATCC-- ; cor=; Ncor= a 0 0 0 0 0 0.0 6081.0 6081.0 0.0 416.0 315.0 0 0 c 0 0 0 0 0 54.0 71.0 0.0 25.0 6081.0 6081.0 0 0 g 0 0 0 0 0 0.0 176.0 0.0 144.0 452.0 828.0 0 0 t 0 0 0 0 0 6081.0 89.0 0.0 6081.0 787.0 1099.0 0 0

MA1499.2_rc_shift5 (HOXB4_rc)
; oligos_7nt_mkv1_m2 versus MA1499.2_rc (HOXB4_rc); m=55/70; ncol2=6; w=0; offset=3; strand=R; shift=5; score=0.413586; -----TAATkA-- ; cor=; Ncor= a 0 0 0 0 0 0.0 9080.0 9080.0 0.0 0.0 9080.0 0 0 c 0 0 0 0 0 55.0 271.0 0.0 265.0 0.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 5459.0 2103.0 0 0 t 0 0 0 0 0 9080.0 0.0 0.0 9080.0 3621.0 0.0 0 0

MA0704.2_shift5 (Lhx4)
; oligos_7nt_mkv1_m2 versus MA0704.2 (Lhx4); m=56/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.41234; -----TAATTA-- ; cor=; Ncor= a 0 0 0 0 0 217.0 2896.0 2896.0 0.0 0.0 2896.0 0 0 c 0 0 0 0 0 912.0 428.0 0.0 0.0 446.0 39.0 0 0 g 0 0 0 0 0 0.0 309.0 0.0 0.0 57.0 316.0 0 0 t 0 0 0 0 0 2896.0 255.0 155.0 2896.0 2896.0 135.0 0 0

MA0662.2_shift5 (MIXL1)
; oligos_7nt_mkv1_m2 versus MA0662.2 (MIXL1); m=57/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.412029; -----yAATTA-- ; cor=; Ncor= a 0 0 0 0 0 2635.0 27042.0 27042.0 0.0 1385.0 27042.0 0 0 c 0 0 0 0 0 11639.0 1911.0 662.0 510.0 4270.0 1903.0 0 0 g 0 0 0 0 0 1245.0 3660.0 556.0 181.0 2031.0 115.0 0 0 t 0 0 0 0 0 15403.0 1038.0 736.0 27042.0 27042.0 2895.0 0 0

MA1507.2_rc_shift5 (HOXD4_rc)
; oligos_7nt_mkv1_m2 versus MA1507.2_rc (HOXD4_rc); m=58/70; ncol2=6; w=0; offset=3; strand=R; shift=5; score=0.410205; -----TAATkR-- ; cor=; Ncor= a 0 0 0 0 0 0.0 3405.0 3405.0 0.0 0.0 3405.0 0 0 c 0 0 0 0 0 194.0 0.0 0.0 176.0 0.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1862.0 1184.0 0 0 t 0 0 0 0 0 3405.0 0.0 0.0 3405.0 1542.0 0.0 0 0

MA0714.2_shift5 (PITX3)
; oligos_7nt_mkv1_m2 versus MA0714.2 (PITX3); m=59/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.408979; -----TAATCC-- ; cor=; Ncor= a 0 0 0 0 0 493.0 6253.0 6253.0 262.0 318.0 227.0 0 0 c 0 0 0 0 0 51.0 32.0 0.0 138.0 6253.0 6253.0 0 0 g 0 0 0 0 0 9.0 260.0 15.0 1101.0 166.0 239.0 0 0 t 0 0 0 0 0 6253.0 158.0 0.0 6253.0 236.0 968.0 0 0

MA1504.2_rc_shift5 (HOXC4_rc)
; oligos_7nt_mkv1_m2 versus MA1504.2_rc (HOXC4_rc); m=60/70; ncol2=6; w=0; offset=3; strand=R; shift=5; score=0.408644; -----TAATkR-- ; cor=; Ncor= a 0 0 0 0 0 0.0 8759.0 8759.0 0.0 0.0 8759.0 0 0 c 0 0 0 0 0 825.0 0.0 0.0 583.0 0.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 5152.0 3111.0 0 0 t 0 0 0 0 0 8759.0 0.0 0.0 8759.0 3607.0 188.0 0 0

MA0716.2_shift5 (PRRX1)
; oligos_7nt_mkv1_m2 versus MA0716.2 (PRRX1); m=61/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.404329; -----yAATTA-- ; cor=; Ncor= a 0 0 0 0 0 2373.0 23897.0 23897.0 0.0 1264.0 23897.0 0 0 c 0 0 0 0 0 11122.0 1088.0 503.0 3.0 2302.0 644.0 0 0 g 0 0 0 0 0 1121.0 1776.0 202.0 0.0 1004.0 136.0 0 0 t 0 0 0 0 0 12775.0 810.0 209.0 23897.0 23897.0 1229.0 0 0

MA0682.3_shift5 (PITX1)
; oligos_7nt_mkv1_m2 versus MA0682.3 (PITX1); m=62/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.404177; -----TAATCC-- ; cor=; Ncor= a 0 0 0 0 0 0.0 10531.0 10531.0 0.0 143.0 68.0 0 0 c 0 0 0 0 0 0.0 0.0 0.0 0.0 10531.0 10531.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 1039.0 0.0 134.0 0 0 t 0 0 0 0 0 10531.0 0.0 0.0 10531.0 141.0 547.0 0 0

MA0467.3_rc_shift5 (Crx_rc)
; oligos_7nt_mkv1_m2 versus MA0467.3_rc (Crx_rc); m=63/70; ncol2=6; w=0; offset=3; strand=R; shift=5; score=0.404163; -----TAATCC-- ; cor=; Ncor= a 0 0 0 0 0 44.0 4238.0 4281.0 47.0 71.0 30.0 0 0 c 0 0 0 0 0 23.0 20.0 9.0 42.0 4200.0 4129.0 0 0 g 0 0 0 0 0 25.0 25.0 32.0 17.0 36.0 155.0 0 0 t 0 0 0 0 0 4241.0 50.0 11.0 4227.0 26.0 19.0 0 0

MA0025.3_shift0 (NFIL3)
; oligos_7nt_mkv1_m2 versus MA0025.3 (NFIL3); m=64/70; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.402363; TTATGyAAt---- ; cor=; Ncor= a 870.0 468.0 21353.0 659.0 1460.0 1358.0 21848.0 21911.0 2193.0 0 0 0 0 c 681.0 208.0 220.0 1511.0 467.0 12004.0 543.0 251.0 4959.0 0 0 0 0 g 518.0 1714.0 990.0 492.0 20459.0 454.0 171.0 360.0 2701.0 0 0 0 0 t 20927.0 20606.0 433.0 20334.0 610.0 9180.0 434.0 474.0 13143.0 0 0 0 0

MA0628.2_shift5 (POU6F1)
; oligos_7nt_mkv1_m2 versus MA0628.2 (POU6F1); m=65/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.402071; -----TAATTA-- ; cor=; Ncor= a 0 0 0 0 0 32.0 905.0 938.0 14.0 18.0 950.0 0 0 c 0 0 0 0 0 10.0 70.0 34.0 14.0 8.0 8.0 0 0 g 0 0 0 0 0 8.0 8.0 14.0 34.0 70.0 10.0 0 0 t 0 0 0 0 0 950.0 18.0 14.0 938.0 905.0 32.0 0 0

MA0876.2_rc_shift5 (BSX_rc)
; oligos_7nt_mkv1_m2 versus MA0876.2_rc (BSX_rc); m=66/70; ncol2=6; w=0; offset=3; strand=R; shift=5; score=0.40173; -----TAATkr-- ; cor=; Ncor= a 0 0 0 0 0 0.0 8832.0 8832.0 66.0 116.0 3247.0 0 0 c 0 0 0 0 0 0.0 0.0 0.0 1078.0 2197.0 103.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 194.0 2483.0 5585.0 0 0 t 0 0 0 0 0 8832.0 96.0 0.0 8832.0 4036.0 688.0 0 0

MA0612.3_shift5 (EMX1)
; oligos_7nt_mkv1_m2 versus MA0612.3 (EMX1); m=67/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.401579; -----TAATTA-- ; cor=; Ncor= a 0 0 0 0 0 19.0 9544.0 9544.0 0.0 0.0 9544.0 0 0 c 0 0 0 0 0 2263.0 1235.0 0.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 933.0 0.0 0 0 t 0 0 0 0 0 7281.0 0.0 0.0 9544.0 9544.0 0.0 0 0

MA0132.3_rc_shift5 (PDX1_rc)
; oligos_7nt_mkv1_m2 versus MA0132.3_rc (PDX1_rc); m=68/70; ncol2=6; w=0; offset=3; strand=R; shift=5; score=0.401256; -----TAATkr-- ; cor=; Ncor= a 0 0 0 0 0 0.0 7130.0 7130.0 0.0 78.0 4661.0 0 0 c 0 0 0 0 0 0.0 0.0 0.0 0.0 185.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 45.0 2291.0 2469.0 0 0 t 0 0 0 0 0 7130.0 0.0 0.0 7130.0 4839.0 292.0 0 0

MA0886.2_shift5 (EMX2)
; oligos_7nt_mkv1_m2 versus MA0886.2 (EMX2); m=69/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.401209; -----TAATTA-- ; cor=; Ncor= a 0 0 0 0 0 834.0 37262.0 37262.0 0.0 0.0 37262.0 0 0 c 0 0 0 0 0 7761.0 4938.0 0.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0.0 678.0 0.0 0.0 4025.0 0.0 0 0 t 0 0 0 0 0 29501.0 1236.0 0.0 37262.0 37262.0 0.0 0 0

MA0721.2_shift5 (UNCX)
; oligos_7nt_mkv1_m2 versus MA0721.2 (UNCX); m=70/70; ncol2=6; w=0; offset=3; strand=D; shift=5; score=0.400181; -----yAATTA-- ; cor=; Ncor= a 0 0 0 0 0 3975.0 36926.0 36926.0 481.0 3111.0 36926.0 0 0 c 0 0 0 0 0 16800.0 2540.0 1302.0 806.0 3958.0 2211.0 0 0 g 0 0 0 0 0 2086.0 4582.0 420.0 117.0 1782.0 731.0 0 0 t 0 0 0 0 0 20126.0 2629.0 890.0 36926.0 36926.0 3885.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m3_shift3 (oligos_7nt_mkv1_m3)				; oligos_7nt_mkv1_m3; m=0 (reference); ncol1=11; shift=3; ncol=14; ---msCACGCCGsC ; Alignment reference a 0 0 0 3 1 0 8 0 0 0 0 1 0 0 c 0 0 0 5 5 10 0 10 0 9 9 1 6 7 g 0 0 0 2 4 0 2 0 10 0 0 7 4 1 t 0 0 0 0 0 0 0 0 0 1 1 1 0 2
MA0746.3_shift3 (SP3)				; oligos_7nt_mkv1_m3 versus MA0746.3 (SP3); m=1/19; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.779616; ---rCCACGCCCmC ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0
MA0741.1_shift3 (KLF16)				; oligos_7nt_mkv1_m3 versus MA0741.1 (KLF16); m=2/19; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.770806; ---gmCMCgCCCMC ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0
MA1564.2_shift4 (SP9)				; oligos_7nt_mkv1_m3 versus MA1564.2 (SP9); m=3/19; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.726042; ----cCmCGCCCmc ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0
MA1512.2_shift4 (KLF11)				; oligos_7nt_mkv1_m3 versus MA1512.2 (KLF11); m=4/19; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.723021; ----cCACGCCCmC ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0
MA0747.2_shift4 (SP8)				; oligos_7nt_mkv1_m3 versus MA0747.2 (SP8); m=5/19; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.640119; ----mCACgCCCmC ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0
MA1517.2_shift4 (KLF6)				; oligos_7nt_mkv1_m3 versus MA1517.2 (KLF6); m=6/19; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.61315; ----cCACRCCCm- ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0
MA0742.2_rc_shift4 (KLF12_rc)				; oligos_7nt_mkv1_m3 versus MA0742.2_rc (KLF12_rc); m=7/19; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.596196; ----CCCCGCCCC- ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0
MA1516.2_shift2 (KLF3)				; oligos_7nt_mkv1_m3 versus MA1516.2 (KLF3); m=8/19; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.589197; --grCCrCGCCC-- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0
MA1511.2_rc_shift4 (KLF10_rc)				; oligos_7nt_mkv1_m3 versus MA1511.2_rc (KLF10_rc); m=9/19; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.588148; ----CCMCGCCCC- ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0
MA0740.2_rc_shift4 (KLF14_rc)				; oligos_7nt_mkv1_m3 versus MA0740.2_rc (KLF14_rc); m=10/19; ncol2=9; w=0; offset=1; strand=R; shift=4; score= 0.5797; ----CCMCGCCCm- ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0
MA1515.2_shift4 (KLF2)				; oligos_7nt_mkv1_m3 versus MA1515.2 (KLF2); m=11/19; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.56975; ----CCmCrCCC-- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0
MA0657.2_shift2 (KLF13)				; oligos_7nt_mkv1_m3 versus MA0657.2 (KLF13); m=12/19; ncol2=17; w=-1; offset=-1; strand=D; shift=2; score=0.488932; --tRmCACGCCCCY ; cor=; Ncor= a 0 0 733.0 1891.0 496.0 75.0 2384.0 0.0 24.0 0.0 4.0 1.0 509.0 3.0 c 0 0 46.0 0.0 923.0 924.0 0.0 1353.0 2.0 1596.0 1469.0 1760.0 1766.0 638.0 g 0 0 796.0 4630.0 58.0 2.0 11.0 7.0 3028.0 0.0 0.0 0.0 0.0 3.0 t 0 0 1766.0 59.0 102.0 61.0 0.0 3.0 9.0 7.0 0.0 16.0 10.0 1403.0
MA0006.2_rc_shift5 (Ahr::Arnt_rc)				; oligos_7nt_mkv1_m3 versus MA0006.2_rc (Ahr::Arnt_rc); m=13/19; ncol2=5; w=0; offset=2; strand=R; shift=5; score=0.448014; -----CACGC---- ; cor=; Ncor= a 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 0 0 0 0 c 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0 0 0 0
MA0472.2_shift0 (EGR2)				; oligos_7nt_mkv1_m3 versus MA0472.2 (EGR2); m=14/19; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.443549; mCGCCCACGCa--- ; cor=; Ncor= a 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 0 0 c 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 0 0 g 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 0 0 t 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0 0 0
MA0162.5_shift0 (EGR1)				; oligos_7nt_mkv1_m3 versus MA0162.5 (EGR1); m=15/19; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.441596; mCGCCCACgC---- ; cor=; Ncor= a 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 0 c 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 0 g 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 0 t 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0 0
MA0733.2_shift0 (EGR4)				; oligos_7nt_mkv1_m3 versus MA0733.2 (EGR4); m=16/19; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.435585; mCGCCCACGCA--- ; cor=; Ncor= a 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 0 0 0 c 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 0 0 0 g 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 0 0 0 t 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0 0 0 0
MA1959.2_rc_shift7 (KLF7_rc)				; oligos_7nt_mkv1_m3 versus MA1959.2_rc (KLF7_rc); m=17/19; ncol2=8; w=0; offset=4; strand=R; shift=7; score=0.427473; -------CcMCGCC ; cor=; Ncor= a 0 0 0 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 c 0 0 0 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 g 0 0 0 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 t 0 0 0 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0
MA0732.2_shift0 (EGR3)				; oligos_7nt_mkv1_m3 versus MA0732.2 (EGR3); m=18/19; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.426763; mCGCCCMCGCA--- ; cor=; Ncor= a 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 0 0 0 c 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 0 0 0 g 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 0 0 0 t 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 0 0 0
MA0014.4_rc_shift2 (PAX5_rc)				; oligos_7nt_mkv1_m3 versus MA0014.4_rc (PAX5_rc); m=19/19; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.425794; --GGTCACGC---- ; cor=; Ncor= a 0 0 144.0 18.0 60.0 4.0 1200.0 23.0 84.0 12.0 0 0 0 0 c 0 0 118.0 57.0 70.0 1355.0 30.0 1243.0 34.0 1231.0 0 0 0 0 g 0 0 1081.0 1305.0 39.0 37.0 88.0 35.0 1276.0 151.0 0 0 0 0 t 0 0 69.0 32.0 1243.0 16.0 94.0 111.0 18.0 18.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)				; oligos_6nt_mkv1_m2; m=0 (reference); ncol1=10; shift=3; ncol=13; ---mrAAAAATkw ; Alignment reference a 0 0 0 4 4 11 11 11 11 11 0 2 6 c 0 0 0 4 2 0 0 0 0 0 0 2 0 g 0 0 0 2 4 0 0 0 0 0 0 4 2 t 0 0 0 1 1 0 0 0 0 0 11 3 3
MA0052.5_shift3 (MEF2A)				; oligos_6nt_mkv1_m2 versus MA0052.5 (MEF2A); m=1/10; ncol2=10; w=0; offset=0; strand=D; shift=3; score=0.75892; ---cTAAAAATAG ; cor=; Ncor= a 0 0 0 1984.0 627.0 12437.0 13132.0 14680.0 14453.0 14956.0 441.0 15582.0 2566.0 c 0 0 0 10919.0 2974.0 1013.0 253.0 141.0 231.0 173.0 349.0 50.0 1060.0 g 0 0 0 1007.0 236.0 1066.0 610.0 506.0 241.0 202.0 215.0 422.0 11104.0 t 0 0 0 2252.0 12325.0 1646.0 2167.0 835.0 1237.0 831.0 15157.0 108.0 1432.0
MA2124.1_rc_shift3 (Hmga1_rc)				; oligos_6nt_mkv1_m2 versus MA2124.1_rc (Hmga1_rc); m=2/10; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.697897; ---wTAAAAAT-- ; cor=; Ncor= a 0 0 0 11340.0 542.0 24333.0 24654.0 24779.0 24269.0 24172.0 496.0 0 0 c 0 0 0 2438.0 358.0 294.0 237.0 138.0 303.0 421.0 188.0 0 0 g 0 0 0 2348.0 473.0 409.0 264.0 194.0 200.0 393.0 71.0 0 0 t 0 0 0 9680.0 24433.0 770.0 651.0 695.0 1034.0 820.0 25051.0 0 0
MA0497.2_shift3 (MEF2C)				; oligos_6nt_mkv1_m2 versus MA0497.2 (MEF2C); m=3/10; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.694716; ---cyAAAAATAG ; cor=; Ncor= a 0 0 0 382.0 0.0 1616.0 1706.0 2107.0 2131.0 2135.0 56.0 2177.0 389.0 c 0 0 0 1412.0 985.0 256.0 32.0 0.0 0.0 0.0 62.0 0.0 120.0 g 0 0 0 78.0 0.0 74.0 241.0 87.0 2.0 4.0 0.0 32.0 1671.0 t 0 0 0 337.0 1224.0 263.0 230.0 15.0 76.0 70.0 2091.0 0.0 29.0
MA1562.2_shift3 (SOX14)				; oligos_6nt_mkv1_m2 versus MA1562.2 (SOX14); m=4/10; ncol2=9; w=0; offset=0; strand=D; shift=3; score=0.658257; ---CGAACAATg- ; cor=; Ncor= a 0 0 0 68.0 44.0 594.0 594.0 4.0 594.0 594.0 0.0 75.0 0 c 0 0 0 594.0 18.0 8.0 13.0 594.0 0.0 17.0 2.0 67.0 0 g 0 0 0 44.0 594.0 27.0 0.0 10.0 0.0 0.0 16.0 372.0 0 t 0 0 0 99.0 70.0 37.0 19.0 17.0 0.0 5.0 594.0 80.0 0
MA1125.2_shift4 (ZNF384)				; oligos_6nt_mkv1_m2 versus MA1125.2 (ZNF384); m=5/10; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.626226; ----AAAAAAaa- ; cor=; Ncor= a 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 c 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 g 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 t 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0
MA1563.2_shift5 (SOX18)				; oligos_6nt_mkv1_m2 versus MA1563.2 (SOX18); m=6/10; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.579047; -----aACAATdv ; cor=; Ncor= a 0 0 0 0 0 424.0 424.0 0.0 424.0 424.0 0.0 203.0 382.0 c 0 0 0 0 0 81.0 0.0 424.0 0.0 35.0 0.0 0.0 551.0 g 0 0 0 0 0 170.0 0.0 91.0 0.0 17.0 0.0 221.0 424.0 t 0 0 0 0 0 34.0 0.0 2.0 0.0 0.0 447.0 228.0 0.0
MA0868.3_shift5 (SOX8)				; oligos_6nt_mkv1_m2 versus MA0868.3 (SOX8); m=7/10; ncol2=7; w=0; offset=2; strand=D; shift=5; score=0.521286; -----AACAATr- ; cor=; Ncor= a 0 0 0 0 0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 0 c 0 0 0 0 0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 0 g 0 0 0 0 0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 0 t 0 0 0 0 0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 0
MA0757.2_shift5 (ONECUT3)				; oligos_6nt_mkv1_m2 versus MA0757.2 (ONECUT3); m=8/10; ncol2=12; w=0; offset=2; strand=D; shift=5; score=0.486351; -----aAAAATCr ; cor=; Ncor= a 0 0 0 0 0 3851.0 6080.0 6080.0 6080.0 6080.0 32.0 23.0 3950.0 c 0 0 0 0 0 379.0 274.0 173.0 28.0 5.0 103.0 6080.0 20.0 g 0 0 0 0 0 1141.0 498.0 112.0 102.0 41.0 14.0 3.0 2130.0 t 0 0 0 0 0 709.0 878.0 1221.0 54.0 11.0 6080.0 5.0 11.0
MA1729.2_shift0 (ZNF680)				; oligos_6nt_mkv1_m2 versus MA1729.2 (ZNF680); m=9/10; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.43642; CCAAGAAGAAT-- ; cor=; Ncor= a 418.0 1120.0 5394.0 4522.0 43.0 5681.0 5479.0 494.0 5661.0 4020.0 202.0 0 0 c 4870.0 4324.0 60.0 17.0 14.0 23.0 13.0 40.0 41.0 808.0 396.0 0 0 g 133.0 69.0 208.0 1116.0 5691.0 44.0 203.0 5144.0 39.0 163.0 213.0 0 0 t 345.0 253.0 104.0 111.0 18.0 18.0 71.0 88.0 25.0 775.0 4955.0 0 0
MA0606.3_shift1 (Nfat5)				; oligos_6nt_mkv1_m2 versus MA0606.3 (Nfat5); m=10/10; ncol2=8; w=-2; offset=-2; strand=D; shift=1; score=0.406343; -ATGGAAAA---- ; cor=; Ncor= a 0 279.0 35.0 13.0 16.0 328.0 336.0 334.0 315.0 0 0 0 0 c 0 17.0 10.0 0.0 8.0 8.0 1.0 4.0 8.0 0 0 0 0 g 0 47.0 9.0 332.0 325.0 15.0 10.0 8.0 19.0 0 0 0 0 t 0 13.0 302.0 11.0 7.0 5.0 9.0 10.0 14.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m3_shift3 (oligos_6nt_mkv1_m3)				; oligos_6nt_mkv1_m3; m=0 (reference); ncol1=10; shift=3; ncol=13; ---ssCACGCCgs ; Alignment reference a 0 0 0 2 2 0 8 0 0 0 0 1 0 c 0 0 0 4 4 8 0 9 0 8 9 2 5 g 0 0 0 3 3 1 1 0 9 0 0 5 4 t 0 0 0 0 0 0 0 0 0 1 0 1 0
MA0746.3_shift3 (SP3)				; oligos_6nt_mkv1_m3 versus MA0746.3 (SP3); m=1/24; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.740015; ---rCCACGCCCm ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0
MA0741.1_shift3 (KLF16)				; oligos_6nt_mkv1_m3 versus MA0741.1 (KLF16); m=2/24; ncol2=11; w=0; offset=0; strand=D; shift=3; score=0.733747; ---gmCMCgCCCM ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0
MA1517.2_shift4 (KLF6)				; oligos_6nt_mkv1_m3 versus MA1517.2 (KLF6); m=3/24; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.719414; ----cCACRCCCm ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0
MA1512.2_shift4 (KLF11)				; oligos_6nt_mkv1_m3 versus MA1512.2 (KLF11); m=4/24; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.677023; ----cCACGCCCm ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0
MA1564.2_shift4 (SP9)				; oligos_6nt_mkv1_m3 versus MA1564.2 (SP9); m=5/24; ncol2=10; w=0; offset=1; strand=D; shift=4; score=0.676778; ----cCmCGCCCm ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0
MA0742.2_rc_shift4 (KLF12_rc)				; oligos_6nt_mkv1_m3 versus MA0742.2_rc (KLF12_rc); m=6/24; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.669862; ----CCCCGCCCC ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948
MA1516.2_shift2 (KLF3)				; oligos_6nt_mkv1_m3 versus MA1516.2 (KLF3); m=7/24; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.667063; --grCCrCGCCC- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0
MA1511.2_rc_shift4 (KLF10_rc)				; oligos_6nt_mkv1_m3 versus MA1511.2_rc (KLF10_rc); m=8/24; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.665117; ----CCMCGCCCC ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427
MA0740.2_rc_shift4 (KLF14_rc)				; oligos_6nt_mkv1_m3 versus MA0740.2_rc (KLF14_rc); m=9/24; ncol2=9; w=0; offset=1; strand=R; shift=4; score=0.65908; ----CCMCGCCCm ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158
MA1515.2_shift4 (KLF2)				; oligos_6nt_mkv1_m3 versus MA1515.2 (KLF2); m=10/24; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.656557; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0
MA0747.2_shift4 (SP8)				; oligos_6nt_mkv1_m3 versus MA0747.2 (SP8); m=11/24; ncol2=11; w=0; offset=1; strand=D; shift=4; score=0.601146; ----mCACgCCCm ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0
MA1959.2_rc_shift4 (KLF7_rc)				; oligos_6nt_mkv1_m3 versus MA1959.2_rc (KLF7_rc); m=12/24; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.570374; ----CcMCGCCC- ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0
MA0493.3_rc_shift4 (KLF1_rc)				; oligos_6nt_mkv1_m3 versus MA0493.3_rc (KLF1_rc); m=13/24; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.569133; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0
MA1513.2_shift4 (KLF15)				; oligos_6nt_mkv1_m3 versus MA1513.2 (KLF15); m=14/24; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.568283; ----cCCCGCCC- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0
MA0006.2_rc_shift5 (Ahr::Arnt_rc)				; oligos_6nt_mkv1_m3 versus MA0006.2_rc (Ahr::Arnt_rc); m=15/24; ncol2=5; w=0; offset=2; strand=R; shift=5; score=0.495053; -----CACGC--- ; cor=; Ncor= a 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0 0 0
MA0657.2_shift2 (KLF13)				; oligos_6nt_mkv1_m3 versus MA0657.2 (KLF13); m=16/24; ncol2=17; w=-1; offset=-1; strand=D; shift=2; score=0.493609; --tRmCACGCCCC ; cor=; Ncor= a 0 0 733.0 1891.0 496.0 75.0 2384.0 0.0 24.0 0.0 4.0 1.0 509.0 c 0 0 46.0 0.0 923.0 924.0 0.0 1353.0 2.0 1596.0 1469.0 1760.0 1766.0 g 0 0 796.0 4630.0 58.0 2.0 11.0 7.0 3028.0 0.0 0.0 0.0 0.0 t 0 0 1766.0 59.0 102.0 61.0 0.0 3.0 9.0 7.0 0.0 16.0 10.0
MA0014.4_rc_shift2 (PAX5_rc)				; oligos_6nt_mkv1_m3 versus MA0014.4_rc (PAX5_rc); m=17/24; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.490046; --GGTCACGC--- ; cor=; Ncor= a 0 0 144.0 18.0 60.0 4.0 1200.0 23.0 84.0 12.0 0 0 0 c 0 0 118.0 57.0 70.0 1355.0 30.0 1243.0 34.0 1231.0 0 0 0 g 0 0 1081.0 1305.0 39.0 37.0 88.0 35.0 1276.0 151.0 0 0 0 t 0 0 69.0 32.0 1243.0 16.0 94.0 111.0 18.0 18.0 0 0 0
MA0162.5_shift0 (EGR1)				; oligos_6nt_mkv1_m3 versus MA0162.5 (EGR1); m=18/24; ncol2=10; w=-3; offset=-3; strand=D; shift=0; score=0.464451; mCGCCCACgC--- ; cor=; Ncor= a 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 c 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 g 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 t 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0
MA0472.2_shift0 (EGR2)				; oligos_6nt_mkv1_m3 versus MA0472.2 (EGR2); m=19/24; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.459067; mCGCCCACGCa-- ; cor=; Ncor= a 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 0 c 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 0 g 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 0 t 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0 0
MA0733.2_shift0 (EGR4)				; oligos_6nt_mkv1_m3 versus MA0733.2 (EGR4); m=20/24; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.446205; mCGCCCACGCA-- ; cor=; Ncor= a 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 0 0 c 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 0 0 g 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 0 0 t 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0 0 0
MA0732.2_shift0 (EGR3)				; oligos_6nt_mkv1_m3 versus MA0732.2 (EGR3); m=21/24; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.436964; mCGCCCMCGCA-- ; cor=; Ncor= a 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 0 0 c 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 0 0 g 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 0 0 t 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 0 0
MA0259.2_rc_shift5 (ARNT::HIF1A_rc)				; oligos_6nt_mkv1_m3 versus MA0259.2_rc (ARNT::HIF1A_rc); m=22/24; ncol2=5; w=0; offset=2; strand=R; shift=5; score=0.430633; -----CACGT--- ; cor=; Ncor= a 0 0 0 0 0 0.0 104.0 0.0 1.0 1.0 0 0 0 c 0 0 0 0 0 104.0 0.0 104.0 0.0 23.0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 103.0 2.0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 78.0 0 0 0
MA1106.2_rc_shift4 (HIF1A_rc)				; oligos_6nt_mkv1_m3 versus MA1106.2_rc (HIF1A_rc); m=23/24; ncol2=6; w=0; offset=1; strand=R; shift=4; score=0.426597; ----GCACGT--- ; cor=; Ncor= a 0 0 0 0 35.0 11.0 934.0 0.0 1.0 2.0 0 0 0 c 0 0 0 0 20.0 844.0 11.0 979.0 0.0 2.0 0 0 0 g 0 0 0 0 837.0 41.0 33.0 0.0 979.0 0.0 0 0 0 t 0 0 0 0 88.0 84.0 2.0 1.0 0.0 976.0 0 0 0
MA1713.2_shift6 (ZNF610)				; oligos_6nt_mkv1_m3 versus MA1713.2 (ZNF610); m=24/24; ncol2=10; w=0; offset=3; strand=D; shift=6; score=0.400034; ------scGCCGC ; cor=; Ncor= a 0 0 0 0 0 0 176.0 354.0 68.0 37.0 18.0 18.0 4.0 c 0 0 0 0 0 0 1222.0 1347.0 121.0 2245.0 2312.0 45.0 2357.0 g 0 0 0 0 0 0 738.0 392.0 2118.0 84.0 41.0 2312.0 21.0 t 0 0 0 0 0 0 250.0 293.0 79.0 20.0 15.0 11.0 4.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m1_shift2 (oligos_6nt_mkv1_m1)				; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=11; shift=2; ncol=13; --CmCCGCGCCgs ; Alignment reference a 0 0 1 4 0 0 3 0 0 0 0 3 0 c 0 0 9 5 12 11 1 13 1 13 12 3 4 g 0 0 3 3 0 1 9 0 12 0 0 5 8 t 0 0 0 1 1 1 0 0 0 0 1 2 1
MA1516.2_shift2 (KLF3)				; oligos_6nt_mkv1_m1 versus MA1516.2 (KLF3); m=1/23; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.73491; --grCCrCGCCC- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0
MA2328.1_shift3 (ZBED4)				; oligos_6nt_mkv1_m1 versus MA2328.1 (ZBED4); m=2/23; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.650244; ---CcCGCyCCGC ; cor=; Ncor= a 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 c 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 g 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 t 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0
MA0742.2_rc_shift4 (KLF12_rc)				; oligos_6nt_mkv1_m1 versus MA0742.2_rc (KLF12_rc); m=3/23; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.647245; ----CCCCGCCCC ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948
MA0079.5_rc_shift2 (SP1_rc)				; oligos_6nt_mkv1_m1 versus MA0079.5_rc (SP1_rc); m=4/23; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.635638; --CyCCKCCCC-- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0
MA0746.3_shift3 (SP3)				; oligos_6nt_mkv1_m1 versus MA0746.3 (SP3); m=5/23; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.630163; ---rCCACGCCCm ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0
MA1511.2_rc_shift4 (KLF10_rc)				; oligos_6nt_mkv1_m1 versus MA1511.2_rc (KLF10_rc); m=6/23; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.622995; ----CCMCGCCCC ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427
MA1961.2_rc_shift3 (PATZ1_rc)				; oligos_6nt_mkv1_m1 versus MA1961.2_rc (PATZ1_rc); m=7/23; ncol2=11; w=0; offset=1; strand=R; shift=3; score=0.622493; ---sCCCCkCCCC ; cor=; Ncor= a 0 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 c 0 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 g 0 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 t 0 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0
MA0685.2_rc_shift2 (SP4_rc)				; oligos_6nt_mkv1_m1 versus MA0685.2_rc (SP4_rc); m=8/23; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.61701; --CyCCKCCCc-- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0
MA0516.3_rc_shift2 (SP2_rc)				; oligos_6nt_mkv1_m1 versus MA0516.3_rc (SP2_rc); m=9/23; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.612826; --cCCCGCCCC-- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0
MA0740.2_rc_shift4 (KLF14_rc)				; oligos_6nt_mkv1_m1 versus MA0740.2_rc (KLF14_rc); m=10/23; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.606231; ----CCMCGCCCm ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158
MA1515.2_shift4 (KLF2)				; oligos_6nt_mkv1_m1 versus MA1515.2 (KLF2); m=11/23; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.60007; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0
MA0741.1_shift3 (KLF16)				; oligos_6nt_mkv1_m1 versus MA0741.1 (KLF16); m=12/23; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.593659; ---gmCMCgCCCM ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0
MA1517.2_shift4 (KLF6)				; oligos_6nt_mkv1_m1 versus MA1517.2 (KLF6); m=13/23; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.587296; ----cCACRCCCm ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0
MA1959.2_rc_shift4 (KLF7_rc)				; oligos_6nt_mkv1_m1 versus MA1959.2_rc (KLF7_rc); m=14/23; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.577503; ----CcMCGCCC- ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0
MA1564.2_shift4 (SP9)				; oligos_6nt_mkv1_m1 versus MA1564.2 (SP9); m=15/23; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.574388; ----cCmCGCCCm ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0
MA0493.3_rc_shift4 (KLF1_rc)				; oligos_6nt_mkv1_m1 versus MA0493.3_rc (KLF1_rc); m=16/23; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.566292; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0
MA1513.2_shift4 (KLF15)				; oligos_6nt_mkv1_m1 versus MA1513.2 (KLF15); m=17/23; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.552397; ----cCCCGCCC- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0
MA1713.2_shift1 (ZNF610)				; oligos_6nt_mkv1_m1 versus MA1713.2 (ZNF610); m=18/23; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.55099; -scGCCGCTCC-- ; cor=; Ncor= a 0 176.0 354.0 68.0 37.0 18.0 18.0 4.0 18.0 6.0 123.0 0 0 c 0 1222.0 1347.0 121.0 2245.0 2312.0 45.0 2357.0 34.0 2315.0 1976.0 0 0 g 0 738.0 392.0 2118.0 84.0 41.0 2312.0 21.0 45.0 62.0 186.0 0 0 t 0 250.0 293.0 79.0 20.0 15.0 11.0 4.0 2289.0 3.0 101.0 0 0
MA1512.2_shift4 (KLF11)				; oligos_6nt_mkv1_m1 versus MA1512.2 (KLF11); m=19/23; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.547314; ----cCACGCCCm ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0
MA1650.2_shift4 (ZBTB14)				; oligos_6nt_mkv1_m1 versus MA1650.2 (ZBTB14); m=20/23; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.519051; ----CCGCGCAC- ; cor=; Ncor= a 0 0 0 0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 0 c 0 0 0 0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 0 g 0 0 0 0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 0 t 0 0 0 0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 0
MA0747.2_shift4 (SP8)				; oligos_6nt_mkv1_m1 versus MA0747.2 (SP8); m=21/23; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.494519; ----mCACgCCCm ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0
MA0162.5_shift0 (EGR1)				; oligos_6nt_mkv1_m1 versus MA0162.5 (EGR1); m=22/23; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.457777; mCGCCCACgC--- ; cor=; Ncor= a 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 c 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 g 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 t 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0
MA1727.2_shift5 (ZNF417)				; oligos_6nt_mkv1_m1 versus MA1727.2 (ZNF417); m=23/23; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.453595; -----GGCGCCA- ; cor=; Ncor= a 0 0 0 0 0 1.0 1.0 7.0 1.0 1.0 31.0 984.0 0 c 0 0 0 0 0 1.0 1.0 936.0 1.0 990.0 954.0 13.0 0 g 0 0 0 0 0 996.0 996.0 1.0 996.0 1.0 1.0 1.0 0 t 0 0 0 0 0 1.0 1.0 55.0 1.0 7.0 13.0 1.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m1_shift2 (oligos_7nt_mkv1_m1)				; oligos_7nt_mkv1_m1; m=0 (reference); ncol1=11; shift=2; ncol=13; --CmCCGCGCCgs ; Alignment reference a 0 0 1 4 0 0 3 0 0 0 0 3 0 c 0 0 9 5 12 11 1 13 1 13 12 3 4 g 0 0 3 3 0 1 9 0 12 0 0 5 8 t 0 0 0 1 1 1 0 0 0 0 1 2 1
MA1516.2_shift2 (KLF3)				; oligos_7nt_mkv1_m1 versus MA1516.2 (KLF3); m=1/23; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.73491; --grCCrCGCCC- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0
MA2328.1_shift3 (ZBED4)				; oligos_7nt_mkv1_m1 versus MA2328.1 (ZBED4); m=2/23; ncol2=10; w=0; offset=1; strand=D; shift=3; score=0.650244; ---CcCGCyCCGC ; cor=; Ncor= a 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 c 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 g 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 t 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0
MA0742.2_rc_shift4 (KLF12_rc)				; oligos_7nt_mkv1_m1 versus MA0742.2_rc (KLF12_rc); m=3/23; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.647245; ----CCCCGCCCC ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948
MA0079.5_rc_shift2 (SP1_rc)				; oligos_7nt_mkv1_m1 versus MA0079.5_rc (SP1_rc); m=4/23; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.635638; --CyCCKCCCC-- ; cor=; Ncor= a 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 c 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 g 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 t 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0
MA0746.3_shift3 (SP3)				; oligos_7nt_mkv1_m1 versus MA0746.3 (SP3); m=5/23; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.630163; ---rCCACGCCCm ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0
MA1511.2_rc_shift4 (KLF10_rc)				; oligos_7nt_mkv1_m1 versus MA1511.2_rc (KLF10_rc); m=6/23; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.622995; ----CCMCGCCCC ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427
MA1961.2_rc_shift3 (PATZ1_rc)				; oligos_7nt_mkv1_m1 versus MA1961.2_rc (PATZ1_rc); m=7/23; ncol2=11; w=0; offset=1; strand=R; shift=3; score=0.622493; ---sCCCCkCCCC ; cor=; Ncor= a 0 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 c 0 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 g 0 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 t 0 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0
MA0685.2_rc_shift2 (SP4_rc)				; oligos_7nt_mkv1_m1 versus MA0685.2_rc (SP4_rc); m=8/23; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.61701; --CyCCKCCCc-- ; cor=; Ncor= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0
MA0516.3_rc_shift2 (SP2_rc)				; oligos_7nt_mkv1_m1 versus MA0516.3_rc (SP2_rc); m=9/23; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.612826; --cCCCGCCCC-- ; cor=; Ncor= a 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 c 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 g 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 t 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0
MA0740.2_rc_shift4 (KLF14_rc)				; oligos_7nt_mkv1_m1 versus MA0740.2_rc (KLF14_rc); m=10/23; ncol2=9; w=0; offset=2; strand=R; shift=4; score=0.606231; ----CCMCGCCCm ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158
MA1515.2_shift4 (KLF2)				; oligos_7nt_mkv1_m1 versus MA1515.2 (KLF2); m=11/23; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.60007; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0
MA0741.1_shift3 (KLF16)				; oligos_7nt_mkv1_m1 versus MA0741.1 (KLF16); m=12/23; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.593659; ---gmCMCgCCCM ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0
MA1517.2_shift4 (KLF6)				; oligos_7nt_mkv1_m1 versus MA1517.2 (KLF6); m=13/23; ncol2=9; w=0; offset=2; strand=D; shift=4; score=0.587296; ----cCACRCCCm ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0
MA1959.2_rc_shift4 (KLF7_rc)				; oligos_7nt_mkv1_m1 versus MA1959.2_rc (KLF7_rc); m=14/23; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.577503; ----CcMCGCCC- ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0
MA1564.2_shift4 (SP9)				; oligos_7nt_mkv1_m1 versus MA1564.2 (SP9); m=15/23; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.574388; ----cCmCGCCCm ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0
MA0493.3_rc_shift4 (KLF1_rc)				; oligos_7nt_mkv1_m1 versus MA0493.3_rc (KLF1_rc); m=16/23; ncol2=8; w=0; offset=2; strand=R; shift=4; score=0.566292; ----CCmCrCCC- ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0
MA1513.2_shift4 (KLF15)				; oligos_7nt_mkv1_m1 versus MA1513.2 (KLF15); m=17/23; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.552397; ----cCCCGCCC- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0
MA1713.2_shift1 (ZNF610)				; oligos_7nt_mkv1_m1 versus MA1713.2 (ZNF610); m=18/23; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.55099; -scGCCGCTCC-- ; cor=; Ncor= a 0 176.0 354.0 68.0 37.0 18.0 18.0 4.0 18.0 6.0 123.0 0 0 c 0 1222.0 1347.0 121.0 2245.0 2312.0 45.0 2357.0 34.0 2315.0 1976.0 0 0 g 0 738.0 392.0 2118.0 84.0 41.0 2312.0 21.0 45.0 62.0 186.0 0 0 t 0 250.0 293.0 79.0 20.0 15.0 11.0 4.0 2289.0 3.0 101.0 0 0
MA1512.2_shift4 (KLF11)				; oligos_7nt_mkv1_m1 versus MA1512.2 (KLF11); m=19/23; ncol2=10; w=0; offset=2; strand=D; shift=4; score=0.547314; ----cCACGCCCm ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0
MA1650.2_shift4 (ZBTB14)				; oligos_7nt_mkv1_m1 versus MA1650.2 (ZBTB14); m=20/23; ncol2=8; w=0; offset=2; strand=D; shift=4; score=0.519051; ----CCGCGCAC- ; cor=; Ncor= a 0 0 0 0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0 0 c 0 0 0 0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0 0 g 0 0 0 0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0 0 t 0 0 0 0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0 0
MA0747.2_shift4 (SP8)				; oligos_7nt_mkv1_m1 versus MA0747.2 (SP8); m=21/23; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.494519; ----mCACgCCCm ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0
MA0162.5_shift0 (EGR1)				; oligos_7nt_mkv1_m1 versus MA0162.5 (EGR1); m=22/23; ncol2=10; w=-2; offset=-2; strand=D; shift=0; score=0.457777; mCGCCCACgC--- ; cor=; Ncor= a 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 c 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 g 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 t 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0
MA1727.2_shift5 (ZNF417)				; oligos_7nt_mkv1_m1 versus MA1727.2 (ZNF417); m=23/23; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.453595; -----GGCGCCA- ; cor=; Ncor= a 0 0 0 0 0 1.0 1.0 7.0 1.0 1.0 31.0 984.0 0 c 0 0 0 0 0 1.0 1.0 936.0 1.0 990.0 954.0 13.0 0 g 0 0 0 0 0 996.0 996.0 1.0 996.0 1.0 1.0 1.0 0 t 0 0 0 0 0 1.0 1.0 55.0 1.0 7.0 13.0 1.0 0