compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt Output files match_table_html $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html alignments_1ton $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab html_index $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html match_table_txt $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab prefix $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf file1 1 11 37 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv2_m1 | MA0814.3 | oligos_6nt_mkv2_m1 | TFAP2C | 0.779 | 0.637 | 11 | 9 | 9 | 11 | 0.8182 | 0.8182 | 1.0000 | R | 1 |
| oligos_6nt_mkv2_m1 | MA0003.5 | oligos_6nt_mkv2_m1 | TFAP2A | 0.777 | 0.636 | 11 | 9 | 9 | 11 | 0.8182 | 0.8182 | 1.0000 | D | 1 |
| oligos_6nt_mkv2_m1 | MA2341.1 | oligos_6nt_mkv2_m1 | FEZF2 | 0.764 | 0.556 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | D | 3 |
| oligos_6nt_mkv2_m1 | MA0659.4 | oligos_6nt_mkv2_m1 | Mafg | 0.712 | 0.547 | 11 | 12 | 10 | 13 | 0.7692 | 0.9091 | 0.8333 | D | -2 |
| oligos_6nt_mkv2_m1 | MA0684.3 | oligos_6nt_mkv2_m1 | RUNX3 | 0.749 | 0.545 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | D | 0 |
| oligos_6nt_mkv2_m1 | MA0496.4 | oligos_6nt_mkv2_m1 | MAFK | 0.725 | 0.544 | 11 | 10 | 9 | 12 | 0.7500 | 0.8182 | 0.9000 | D | -1 |
| oligos_6nt_mkv2_m1 | MA2099.1 | oligos_6nt_mkv2_m1 | ZNF770 | 0.857 | 0.500 | 11 | 8 | 7 | 12 | 0.5833 | 0.6364 | 0.8750 | D | -1 |
| oligos_6nt_mkv2_m1 | MA1596.1 | oligos_6nt_mkv2_m1 | ZNF460 | 0.850 | 0.500 | 11 | 16 | 10 | 17 | 0.5882 | 0.9091 | 0.6250 | D | 1 |
| oligos_6nt_mkv2_m1 | MA1629.2 | oligos_6nt_mkv2_m1 | Zic2 | 0.722 | 0.481 | 11 | 9 | 8 | 12 | 0.6667 | 0.7273 | 0.8889 | D | 3 |
| oligos_6nt_mkv2_m1 | MA0002.3 | oligos_6nt_mkv2_m1 | Runx1 | 0.703 | 0.468 | 11 | 9 | 8 | 12 | 0.6667 | 0.7273 | 0.8889 | R | -1 |
| oligos_6nt_mkv2_m1 | MA0842.3 | oligos_6nt_mkv2_m1 | NRL | 0.705 | 0.454 | 11 | 12 | 9 | 14 | 0.6429 | 0.8182 | 0.7500 | R | 2 |
| oligos_6nt_mkv2_m1 | MA0117.3 | oligos_6nt_mkv2_m1 | Mafb | 0.774 | 0.442 | 11 | 11 | 8 | 14 | 0.5714 | 0.7273 | 0.7273 | R | 3 |
| oligos_6nt_mkv2_m1 | MA1997.2 | oligos_6nt_mkv2_m1 | Olig2 | 0.794 | 0.433 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 5 |
| oligos_6nt_mkv2_m1 | MA0633.3 | oligos_6nt_mkv2_m1 | Twist2 | 0.793 | 0.433 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | R | 5 |
| oligos_6nt_mkv2_m1 | MA1993.2 | oligos_6nt_mkv2_m1 | Neurod2 | 0.793 | 0.433 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 5 |
| oligos_6nt_mkv2_m1 | MA1635.2 | oligos_6nt_mkv2_m1 | BHLHE22 | 0.792 | 0.432 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 5 |
| oligos_6nt_mkv2_m1 | MA0521.3 | oligos_6nt_mkv2_m1 | Tcf12 | 0.784 | 0.428 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 5 |
| oligos_6nt_mkv2_m1 | MA0495.4 | oligos_6nt_mkv2_m1 | MAFF | 0.733 | 0.419 | 11 | 11 | 8 | 14 | 0.5714 | 0.7273 | 0.7273 | D | 3 |
Host name rsat Job started 2025-05-16.174432 Job done 2025-05-16.174445 Seconds 2.35 user 2.35 system 0.53 cuser 9.36 ; csystem 0.74