/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
		file1	1	11	47
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m2 MA0091.2 oligos_6nt_mkv2_m2 TAL1::TCF3 0.840 0.764 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv2_m2 MA1524.3 oligos_6nt_mkv2_m2 Msgn1 0.800 0.727 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv2_m2 MA1109.2 oligos_6nt_mkv2_m2 NEUROD1 0.973 0.708 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_6nt_mkv2_m2 MA1618.2 oligos_6nt_mkv2_m2 Ptf1A 0.862 0.705 11 9 9 11 0.8182 0.8182 1.0000 D 1
oligos_6nt_mkv2_m2 MA0668.3 oligos_6nt_mkv2_m2 Neurod2 0.967 0.703 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_6nt_mkv2_m2 MA0607.2 oligos_6nt_mkv2_m2 BHLHA15 0.754 0.685 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv2_m2 MA1568.2 oligos_6nt_mkv2_m2 TCF21 0.750 0.682 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv2_m2 MA0827.1 oligos_6nt_mkv2_m2 OLIG3 0.725 0.659 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv2_m2 MA1570.1 oligos_6nt_mkv2_m2 TFAP4 0.724 0.659 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv2_m2 MA1468.1 oligos_6nt_mkv2_m2 ATOH7 0.724 0.658 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv2_m2 MA0678.1 oligos_6nt_mkv2_m2 OLIG2 0.715 0.650 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv2_m2 MA0698.2 oligos_6nt_mkv2_m2 ZBTB18 0.768 0.640 11 11 10 12 0.8333 0.9091 0.9091 D -1
oligos_6nt_mkv2_m2 MA0818.2 oligos_6nt_mkv2_m2 BHLHE22 0.700 0.637 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv2_m2 MA1467.3 oligos_6nt_mkv2_m2 Atoh1 0.983 0.625 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_6nt_mkv2_m2 MA1642.2 oligos_6nt_mkv2_m2 NEUROG2 0.981 0.624 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_6nt_mkv2_m2 MA1123.3 oligos_6nt_mkv2_m2 TWIST1 0.842 0.612 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_6nt_mkv2_m2 MA0461.3 oligos_6nt_mkv2_m2 Atoh1 0.784 0.570 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6nt_mkv2_m2 MA1638.2 oligos_6nt_mkv2_m2 HAND2 0.986 0.538 11 6 6 11 0.5455 0.5455 1.0000 D 2
oligos_6nt_mkv2_m2 MA0095.4 oligos_6nt_mkv2_m2 Yy1 0.731 0.532 11 8 8 11 0.7273 0.7273 1.0000 D 1
oligos_6nt_mkv2_m2 MA1651.2 oligos_6nt_mkv2_m2 ZFP42 0.703 0.502 11 13 10 14 0.7143 0.9091 0.7692 D 1
oligos_6nt_mkv2_m2 MA1558.2 oligos_6nt_mkv2_m2 SNAI1 0.721 0.459 11 7 7 11 0.6364 0.6364 1.0000 D 1
oligos_6nt_mkv2_m2 MA1999.2 oligos_6nt_mkv2_m2 Prdm5 0.795 0.454 11 11 8 14 0.5714 0.7273 0.7273 R 3
oligos_6nt_mkv2_m2 MA0092.2 oligos_6nt_mkv2_m2 Hand1::Tcf3 0.793 0.427 11 9 7 13 0.5385 0.6364 0.7778 R -2
oligos_6nt_mkv2_m2 MA0820.2 oligos_6nt_mkv2_m2 FIGLA 0.765 0.418 11 6 6 11 0.5455 0.5455 1.0000 R 2
oligos_6nt_mkv2_m2 MA1108.3 oligos_6nt_mkv2_m2 MXI1 0.764 0.417 11 6 6 11 0.5455 0.5455 1.0000 D 2
oligos_6nt_mkv2_m2 MA0100.4 oligos_6nt_mkv2_m2 MYB 0.764 0.417 11 6 6 11 0.5455 0.5455 1.0000 R 2
oligos_6nt_mkv2_m2 MA0521.3 oligos_6nt_mkv2_m2 Tcf12 0.756 0.412 11 6 6 11 0.5455 0.5455 1.0000 R 2
oligos_6nt_mkv2_m2 MA1635.2 oligos_6nt_mkv2_m2 BHLHE22 0.748 0.408 11 6 6 11 0.5455 0.5455 1.0000 R 2
oligos_6nt_mkv2_m2 MA1993.2 oligos_6nt_mkv2_m2 Neurod2 0.746 0.407 11 6 6 11 0.5455 0.5455 1.0000 D 2
oligos_6nt_mkv2_m2 MA0633.3 oligos_6nt_mkv2_m2 Twist2 0.746 0.407 11 6 6 11 0.5455 0.5455 1.0000 D 2
oligos_6nt_mkv2_m2 MA1997.2 oligos_6nt_mkv2_m2 Olig2 0.745 0.406 11 6 6 11 0.5455 0.5455 1.0000 D 2
oligos_6nt_mkv2_m2 MA0103.4 oligos_6nt_mkv2_m2 ZEB1 0.742 0.405 11 6 6 11 0.5455 0.5455 1.0000 R 2 
 Host name	rsat
 Job started	2025-05-16.174446
 Job done	2025-05-16.174501
 Seconds	2.61
	user	2.61
	system	0.78
	cuser	11.53
;	csystem	0.99