One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m2_shift2 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m2_shift2 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=11; shift=2; ncol=13; --dvCAGATGGkd ; Alignment reference a 0 0 12 13 8 42 3 43 0 1 2 11 13 c 0 0 11 15 33 1 2 0 2 1 2 7 7 g 0 0 12 12 4 2 41 0 0 43 41 12 13 t 0 0 12 7 2 2 1 4 45 2 2 17 14

MA0091.2_rc_shift2 (TAL1::TCF3_rc)
; oligos_6nt_mkv2_m2 versus MA0091.2_rc (TAL1::TCF3_rc); m=1/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.763744; --AmCAKMTGkT- ; cor=; Ncor= a 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 0 c 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 0 g 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 0 t 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 0

MA1524.3_shift2 (Msgn1)
; oligos_6nt_mkv2_m2 versus MA1524.3 (Msgn1); m=2/32; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.72739; --raCAAATGGy- ; cor=; Ncor= a 0 0 193.0 363.0 0.0 537.0 460.0 537.0 18.0 1.0 5.0 37.0 0 c 0 0 21.0 128.0 539.0 3.0 8.0 4.0 6.0 2.0 8.0 140.0 0 g 0 0 324.0 46.0 2.0 0.0 52.0 0.0 3.0 531.0 512.0 50.0 0 t 0 0 4.0 5.0 1.0 2.0 22.0 1.0 515.0 8.0 17.0 315.0 0

MA1109.2_shift3 (NEUROD1)
; oligos_6nt_mkv2_m2 versus MA1109.2 (NEUROD1); m=3/32; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.707951; ---aCAGATGG-- ; cor=; Ncor= a 0 0 0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 0 0 c 0 0 0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 0 0 g 0 0 0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 0 0 t 0 0 0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 0 0

MA1618.2_shift3 (Ptf1A)
; oligos_6nt_mkv2_m2 versus MA1618.2 (Ptf1A); m=4/32; ncol2=9; w=0; offset=1; strand=D; shift=3; score=0.705279; ---aCAGATGtt- ; cor=; Ncor= a 0 0 0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 0 c 0 0 0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 0 g 0 0 0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 0 t 0 0 0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 0

MA0668.3_shift3 (Neurod2)
; oligos_6nt_mkv2_m2 versus MA0668.3 (Neurod2); m=5/32; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.703385; ---aCAGATGG-- ; cor=; Ncor= a 0 0 0 20692.0 214.0 32478.0 289.0 29423.0 752.0 179.0 586.0 0 0 c 0 0 0 5909.0 32326.0 131.0 532.0 2571.0 548.0 151.0 1828.0 0 0 g 0 0 0 5852.0 246.0 211.0 30524.0 708.0 313.0 32176.0 27651.0 0 0 t 0 0 0 504.0 171.0 137.0 1612.0 255.0 31344.0 451.0 2892.0 0 0

MA0607.2_shift2 (BHLHA15)
; oligos_6nt_mkv2_m2 versus MA0607.2 (BHLHA15); m=6/32; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.685198; --aCCATATGGt- ; cor=; Ncor= a 0 0 8097.0 2744.0 41.0 11369.0 0.0 11369.0 50.0 0.0 37.0 1749.0 0 c 0 0 757.0 8626.0 11369.0 14.0 59.0 373.0 223.0 0.0 778.0 3251.0 0 g 0 0 3272.0 774.0 0.0 215.0 392.0 56.0 6.0 11369.0 8585.0 772.0 0 t 0 0 1748.0 33.0 0.0 44.0 11369.0 0.0 11369.0 38.0 2784.0 8119.0 0

MA1568.2_rc_shift2 (TCF21_rc)
; oligos_6nt_mkv2_m2 versus MA1568.2_rc (TCF21_rc); m=7/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.682183; --rmCATATGGt- ; cor=; Ncor= a 0 0 431.0 339.0 18.0 872.0 0.0 872.0 14.0 2.0 28.0 194.0 0 c 0 0 6.0 533.0 872.0 0.0 71.0 67.0 164.0 12.0 205.0 352.0 0 g 0 0 441.0 86.0 0.0 107.0 43.0 54.0 0.0 872.0 872.0 20.0 0 t 0 0 87.0 19.0 4.0 21.0 872.0 0.0 872.0 4.0 89.0 872.0 0

MA0827.1_rc_shift2 (OLIG3_rc)
; oligos_6nt_mkv2_m2 versus MA0827.1_rc (OLIG3_rc); m=8/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.658977; --rvCATATGkT- ; cor=; Ncor= a 0 0 1915.0 1010.0 275.0 1915.0 0.0 1915.0 22.0 3.0 6.0 132.0 0 c 0 0 176.0 904.0 1915.0 2.0 11.0 72.0 99.0 0.0 208.0 427.0 0 g 0 0 964.0 662.0 4.0 224.0 103.0 26.0 10.0 1915.0 1115.0 204.0 0 t 0 0 265.0 28.0 4.0 56.0 1915.0 0.0 1915.0 222.0 800.0 1915.0 0

MA1570.1_shift2 (TFAP4)
; oligos_6nt_mkv2_m2 versus MA1570.1 (TFAP4); m=9/32; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.658544; --ahCAyrTGkt- ; cor=; Ncor= a 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0

MA1468.1_rc_shift2 (ATOH7_rc)
; oligos_6nt_mkv2_m2 versus MA1468.1_rc (ATOH7_rc); m=10/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.65825; --rmCATATGkT- ; cor=; Ncor= a 0 0 312.0 291.0 0.0 712.0 0.0 712.0 58.0 0.0 45.0 62.0 0 c 0 0 2.0 261.0 712.0 25.0 78.0 59.0 102.0 0.0 154.0 142.0 0 g 0 0 400.0 155.0 0.0 25.0 180.0 106.0 0.0 712.0 211.0 97.0 0 t 0 0 17.0 5.0 0.0 0.0 712.0 15.0 712.0 0.0 302.0 712.0 0

MA0678.1_rc_shift2 (OLIG2_rc)
; oligos_6nt_mkv2_m2 versus MA0678.1_rc (OLIG2_rc); m=11/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.649925; --rmCATATGkT- ; cor=; Ncor= a 0 0 1609.0 744.0 117.0 1609.0 4.0 1609.0 22.0 0.0 16.0 108.0 0 c 0 0 57.0 866.0 1609.0 0.0 18.0 0.0 53.0 4.0 142.0 283.0 0 g 0 0 689.0 396.0 3.0 159.0 22.0 0.0 2.0 1609.0 929.0 90.0 0 t 0 0 146.0 4.0 10.0 21.0 1609.0 0.0 1609.0 74.0 680.0 1609.0 0

MA0698.2_shift1 (ZBTB18)
; oligos_6nt_mkv2_m2 versus MA0698.2 (ZBTB18); m=12/32; ncol2=11; w=-1; offset=-1; strand=D; shift=1; score=0.639724; -atCCAGATGTk- ; cor=; Ncor= a 0 7064.0 1177.0 3618.0 21.0 13670.0 3.0 13670.0 14.0 3.0 48.0 210.0 0 c 0 753.0 1937.0 13670.0 13670.0 5.0 245.0 1048.0 15.0 1.0 314.0 177.0 0 g 0 2535.0 5212.0 1899.0 3.0 33.0 13670.0 278.0 94.0 13670.0 36.0 5530.0 0 t 0 3319.0 13670.0 60.0 8.0 206.0 6.0 297.0 13670.0 1.0 13670.0 8140.0 0

MA0818.2_rc_shift2 (BHLHE22_rc)
; oligos_6nt_mkv2_m2 versus MA0818.2_rc (BHLHE22_rc); m=13/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.636547; --rmCATATGkT- ; cor=; Ncor= a 0 0 5142.0 3086.0 0.0 8662.0 0.0 8662.0 80.0 0.0 56.0 765.0 0 c 0 0 280.0 4007.0 8662.0 0.0 44.0 75.0 850.0 0.0 1530.0 557.0 0 g 0 0 3520.0 1481.0 0.0 808.0 44.0 59.0 0.0 8662.0 3954.0 491.0 0 t 0 0 448.0 89.0 0.0 90.0 8662.0 0.0 8662.0 0.0 3121.0 8662.0 0

MA1467.3_shift4 (Atoh1)
; oligos_6nt_mkv2_m2 versus MA1467.3 (Atoh1); m=14/32; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.625345; ----CAGATGG-- ; cor=; Ncor= a 0 0 0 0 273.0 20977.0 165.0 21079.0 117.0 280.0 1158.0 0 0 c 0 0 0 0 20657.0 170.0 425.0 115.0 552.0 159.0 2163.0 0 0 g 0 0 0 0 208.0 257.0 18911.0 189.0 99.0 20837.0 15743.0 0 0 t 0 0 0 0 339.0 73.0 1976.0 94.0 20709.0 201.0 2413.0 0 0

MA1642.2_shift4 (NEUROG2)
; oligos_6nt_mkv2_m2 versus MA1642.2 (NEUROG2); m=15/32; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.624055; ----CAGATGG-- ; cor=; Ncor= a 0 0 0 0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 0 0 c 0 0 0 0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 0 0 g 0 0 0 0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 0 0 t 0 0 0 0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 0 0

MA1123.3_shift3 (TWIST1)
; oligos_6nt_mkv2_m2 versus MA1123.3 (TWIST1); m=16/32; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.612324; ---CCAGATGt-- ; cor=; Ncor= a 0 0 0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 0 0 c 0 0 0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 0 0 g 0 0 0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 0 0 t 0 0 0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 0 0

MA0461.3_shift2 (Atoh1)
; oligos_6nt_mkv2_m2 versus MA0461.3 (Atoh1); m=17/32; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.569842; --rmCATATG--- ; cor=; Ncor= a 0 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 0 0 0 c 0 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 0 0 0 g 0 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 0 0 0 t 0 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 0 0 0

MA1638.2_shift4 (HAND2)
; oligos_6nt_mkv2_m2 versus MA1638.2 (HAND2); m=18/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.537924; ----CAGATG--- ; cor=; Ncor= a 0 0 0 0 19.0 29222.0 12.0 30192.0 14.0 234.0 0 0 0 c 0 0 0 0 30062.0 410.0 42.0 30.0 2276.0 149.0 0 0 0 g 0 0 0 0 132.0 647.0 30144.0 38.0 31.0 29851.0 0 0 0 t 0 0 0 0 70.0 4.0 85.0 23.0 27962.0 49.0 0 0 0

MA0095.4_shift3 (Yy1)
; oligos_6nt_mkv2_m2 versus MA0095.4 (Yy1); m=19/32; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.531766; ---CAAAATGG-- ; cor=; Ncor= a 0 0 0 3123.0 41529.0 39666.0 30769.0 41506.0 689.0 561.0 1597.0 0 0 c 0 0 0 33122.0 926.0 1447.0 2536.0 746.0 241.0 165.0 971.0 0 0 g 0 0 0 3684.0 287.0 1320.0 8658.0 712.0 708.0 42263.0 39612.0 0 0 t 0 0 0 3419.0 606.0 915.0 1385.0 384.0 41710.0 359.0 1168.0 0 0

MA1651.2_shift3 (ZFP42)
; oligos_6nt_mkv2_m2 versus MA1651.2 (ZFP42); m=20/32; ncol2=13; w=0; offset=1; strand=D; shift=3; score=0.501998; ---cAArATGGCT ; cor=; Ncor= a 0 0 0 329.0 1608.0 1553.0 817.0 1724.0 6.0 5.0 25.0 31.0 42.0 c 0 0 0 991.0 32.0 54.0 161.0 7.0 13.0 5.0 29.0 1703.0 116.0 g 0 0 0 198.0 79.0 69.0 668.0 13.0 7.0 1741.0 1574.0 7.0 325.0 t 0 0 0 234.0 33.0 76.0 106.0 8.0 1726.0 1.0 124.0 11.0 1269.0

MA1558.2_shift3 (SNAI1)
; oligos_6nt_mkv2_m2 versus MA1558.2 (SNAI1); m=21/32; ncol2=7; w=0; offset=1; strand=D; shift=3; score=0.458508; ---rCAGGTG--- ; cor=; Ncor= a 0 0 0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 0 0 0 c 0 0 0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 0 0 0 g 0 0 0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 0 0 0 t 0 0 0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 0 0 0

MA1999.2_rc_shift5 (Prdm5_rc)
; oligos_6nt_mkv2_m2 versus MA1999.2_rc (Prdm5_rc); m=22/32; ncol2=11; w=0; offset=3; strand=R; shift=5; score=0.454279; -----aGATGGAG ; cor=; Ncor= a 0 0 0 0 0 440.0 93.0 535.0 44.0 15.0 17.0 650.0 30.0 c 0 0 0 0 0 67.0 86.0 128.0 40.0 18.0 30.0 20.0 13.0 g 0 0 0 0 0 145.0 518.0 59.0 81.0 685.0 677.0 31.0 677.0 t 0 0 0 0 0 88.0 43.0 18.0 575.0 22.0 16.0 39.0 20.0

MA0092.2_rc_shift0 (Hand1::Tcf3_rc)
; oligos_6nt_mkv2_m2 versus MA0092.2_rc (Hand1::Tcf3_rc); m=23/32; ncol2=9; w=-2; offset=-2; strand=R; shift=0; score=0.426979; awkCCAGAy---- ; cor=; Ncor= a 16.0 10.0 5.0 1.0 0.0 29.0 1.0 24.0 4.0 0 0 0 0 c 4.0 3.0 1.0 25.0 29.0 0.0 0.0 1.0 15.0 0 0 0 0 g 4.0 0.0 14.0 3.0 0.0 0.0 28.0 2.0 0.0 0 0 0 0 t 5.0 16.0 9.0 0.0 0.0 0.0 0.0 2.0 10.0 0 0 0 0

MA0820.2_rc_shift4 (FIGLA_rc)
; oligos_6nt_mkv2_m2 versus MA0820.2_rc (FIGLA_rc); m=24/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.417534; ----CAGGTG--- ; cor=; Ncor= a 0 0 0 0 65.0 1780.0 0.0 0.0 14.0 29.0 0 0 0 c 0 0 0 0 1780.0 17.0 311.0 527.0 0.0 0.0 0 0 0 g 0 0 0 0 33.0 0.0 1780.0 1780.0 46.0 1780.0 0 0 0 t 0 0 0 0 36.0 56.0 9.0 0.0 1780.0 0.0 0 0 0

MA1108.3_shift4 (MXI1)
; oligos_6nt_mkv2_m2 versus MA1108.3 (MXI1); m=25/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.416968; ----CACATG--- ; cor=; Ncor= a 0 0 0 0 109.0 21870.0 10.0 20506.0 0.0 527.0 0 0 0 c 0 0 0 0 21382.0 1.0 21552.0 0.0 507.0 114.0 0 0 0 g 0 0 0 0 97.0 170.0 18.0 1542.0 0.0 21232.0 0 0 0 t 0 0 0 0 460.0 7.0 468.0 0.0 21541.0 175.0 0 0 0

MA0100.4_rc_shift4 (MYB_rc)
; oligos_6nt_mkv2_m2 versus MA0100.4_rc (MYB_rc); m=26/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.41656; ----CAGTTG--- ; cor=; Ncor= a 0 0 0 0 0.0 1398.0 0.0 6.0 7.0 9.0 0 0 0 c 0 0 0 0 1516.0 68.0 0.0 0.0 39.0 5.0 0 0 0 g 0 0 0 0 3.0 60.0 1527.0 2.0 3.0 1513.0 0 0 0 t 0 0 0 0 8.0 1.0 0.0 1519.0 1478.0 0.0 0 0 0

MA0521.3_rc_shift4 (Tcf12_rc)
; oligos_6nt_mkv2_m2 versus MA0521.3_rc (Tcf12_rc); m=27/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.412143; ----CAGCTG--- ; cor=; Ncor= a 0 0 0 0 374.0 72284.0 836.0 1565.0 341.0 550.0 0 0 0 c 0 0 0 0 72670.0 738.0 1814.0 69780.0 632.0 404.0 0 0 0 g 0 0 0 0 402.0 632.0 69780.0 1814.0 739.0 72674.0 0 0 0 t 0 0 0 0 549.0 341.0 1565.0 836.0 72283.0 367.0 0 0 0

MA1635.2_rc_shift4 (BHLHE22_rc)
; oligos_6nt_mkv2_m2 versus MA1635.2_rc (BHLHE22_rc); m=28/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.407965; ----CAGCTG--- ; cor=; Ncor= a 0 0 0 0 0.0 18267.0 1.0 14.0 0.0 14.0 0 0 0 c 0 0 0 0 18327.0 37.0 53.0 18288.0 52.0 11.0 0 0 0 g 0 0 0 0 15.0 52.0 18288.0 53.0 37.0 18331.0 0 0 0 t 0 0 0 0 14.0 0.0 14.0 1.0 18267.0 0.0 0 0 0

MA1993.2_shift4 (Neurod2)
; oligos_6nt_mkv2_m2 versus MA1993.2 (Neurod2); m=29/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.407003; ----CAGCTG--- ; cor=; Ncor= a 0 0 0 0 14.0 53280.0 8.0 17.0 0.0 39.0 0 0 0 c 0 0 0 0 53913.0 310.0 15.0 53984.0 434.0 58.0 0 0 0 g 0 0 0 0 58.0 434.0 53984.0 15.0 310.0 53913.0 0 0 0 t 0 0 0 0 39.0 0.0 17.0 8.0 53280.0 14.0 0 0 0

MA0633.3_shift4 (Twist2)
; oligos_6nt_mkv2_m2 versus MA0633.3 (Twist2); m=30/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.406933; ----CAGCTG--- ; cor=; Ncor= a 0 0 0 0 15.0 48915.0 9.0 21.0 0.0 60.0 0 0 0 c 0 0 0 0 49473.0 345.0 16.0 49583.0 369.0 81.0 0 0 0 g 0 0 0 0 81.0 369.0 49583.0 16.0 342.0 49473.0 0 0 0 t 0 0 0 0 60.0 0.0 21.0 9.0 48918.0 15.0 0 0 0

MA1997.2_shift4 (Olig2)
; oligos_6nt_mkv2_m2 versus MA1997.2 (Olig2); m=31/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.406287; ----CAGCTG--- ; cor=; Ncor= a 0 0 0 0 10.0 59733.0 14.0 41.0 0.0 50.0 0 0 0 c 0 0 0 0 60968.0 668.0 18.0 61069.0 741.0 114.0 0 0 0 g 0 0 0 0 114.0 741.0 61069.0 18.0 668.0 60968.0 0 0 0 t 0 0 0 0 50.0 0.0 41.0 14.0 59733.0 10.0 0 0 0

MA0103.4_rc_shift4 (ZEB1_rc)
; oligos_6nt_mkv2_m2 versus MA0103.4_rc (ZEB1_rc); m=32/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.404889; ----CAGGTG--- ; cor=; Ncor= a 0 0 0 0 129.0 19269.0 30.0 122.0 1.0 662.0 0 0 0 c 0 0 0 0 19381.0 355.0 649.0 97.0 223.0 158.0 0 0 0 g 0 0 0 0 178.0 501.0 19257.0 19878.0 0.0 19195.0 0 0 0 t 0 0 0 0 441.0 4.0 193.0 32.0 19905.0 114.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m2_shift2 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=11; shift=2; ncol=13; --dvCAGATGGkd ; Alignment reference a 0 0 12 13 8 42 3 43 0 1 2 11 13 c 0 0 11 15 33 1 2 0 2 1 2 7 7 g 0 0 12 12 4 2 41 0 0 43 41 12 13 t 0 0 12 7 2 2 1 4 45 2 2 17 14
MA0091.2_rc_shift2 (TAL1::TCF3_rc)				; oligos_6nt_mkv2_m2 versus MA0091.2_rc (TAL1::TCF3_rc); m=1/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.763744; --AmCAKMTGkT- ; cor=; Ncor= a 0 0 34.0 21.0 1.0 44.0 0.0 32.0 0.0 0.0 0.0 2.0 0 c 0 0 2.0 20.0 43.0 0.0 0.0 11.0 0.0 1.0 0.0 3.0 0 g 0 0 4.0 3.0 0.0 0.0 32.0 1.0 0.0 43.0 24.0 0.0 0 t 0 0 4.0 0.0 0.0 0.0 12.0 0.0 44.0 0.0 20.0 39.0 0
MA1524.3_shift2 (Msgn1)				; oligos_6nt_mkv2_m2 versus MA1524.3 (Msgn1); m=2/32; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.72739; --raCAAATGGy- ; cor=; Ncor= a 0 0 193.0 363.0 0.0 537.0 460.0 537.0 18.0 1.0 5.0 37.0 0 c 0 0 21.0 128.0 539.0 3.0 8.0 4.0 6.0 2.0 8.0 140.0 0 g 0 0 324.0 46.0 2.0 0.0 52.0 0.0 3.0 531.0 512.0 50.0 0 t 0 0 4.0 5.0 1.0 2.0 22.0 1.0 515.0 8.0 17.0 315.0 0
MA1109.2_shift3 (NEUROD1)				; oligos_6nt_mkv2_m2 versus MA1109.2 (NEUROD1); m=3/32; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.707951; ---aCAGATGG-- ; cor=; Ncor= a 0 0 0 1289.0 17.0 2241.0 16.0 2034.0 55.0 13.0 59.0 0 0 c 0 0 0 452.0 2240.0 7.0 24.0 150.0 51.0 7.0 93.0 0 0 g 0 0 0 494.0 13.0 16.0 2152.0 77.0 19.0 2231.0 1962.0 0 0 t 0 0 0 47.0 12.0 18.0 90.0 21.0 2157.0 31.0 168.0 0 0
MA1618.2_shift3 (Ptf1A)				; oligos_6nt_mkv2_m2 versus MA1618.2 (Ptf1A); m=4/32; ncol2=9; w=0; offset=1; strand=D; shift=3; score=0.705279; ---aCAGATGtt- ; cor=; Ncor= a 0 0 0 8554.0 133.0 14064.0 250.0 12132.0 126.0 241.0 965.0 1511.0 0 c 0 0 0 2747.0 14006.0 118.0 466.0 1724.0 224.0 122.0 2058.0 2341.0 0 g 0 0 0 2414.0 130.0 153.0 13072.0 437.0 118.0 13868.0 2854.0 2295.0 0 t 0 0 0 726.0 172.0 106.0 653.0 148.0 13973.0 210.0 8564.0 8294.0 0
MA0668.3_shift3 (Neurod2)				; oligos_6nt_mkv2_m2 versus MA0668.3 (Neurod2); m=5/32; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.703385; ---aCAGATGG-- ; cor=; Ncor= a 0 0 0 20692.0 214.0 32478.0 289.0 29423.0 752.0 179.0 586.0 0 0 c 0 0 0 5909.0 32326.0 131.0 532.0 2571.0 548.0 151.0 1828.0 0 0 g 0 0 0 5852.0 246.0 211.0 30524.0 708.0 313.0 32176.0 27651.0 0 0 t 0 0 0 504.0 171.0 137.0 1612.0 255.0 31344.0 451.0 2892.0 0 0
MA0607.2_shift2 (BHLHA15)				; oligos_6nt_mkv2_m2 versus MA0607.2 (BHLHA15); m=6/32; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.685198; --aCCATATGGt- ; cor=; Ncor= a 0 0 8097.0 2744.0 41.0 11369.0 0.0 11369.0 50.0 0.0 37.0 1749.0 0 c 0 0 757.0 8626.0 11369.0 14.0 59.0 373.0 223.0 0.0 778.0 3251.0 0 g 0 0 3272.0 774.0 0.0 215.0 392.0 56.0 6.0 11369.0 8585.0 772.0 0 t 0 0 1748.0 33.0 0.0 44.0 11369.0 0.0 11369.0 38.0 2784.0 8119.0 0
MA1568.2_rc_shift2 (TCF21_rc)				; oligos_6nt_mkv2_m2 versus MA1568.2_rc (TCF21_rc); m=7/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.682183; --rmCATATGGt- ; cor=; Ncor= a 0 0 431.0 339.0 18.0 872.0 0.0 872.0 14.0 2.0 28.0 194.0 0 c 0 0 6.0 533.0 872.0 0.0 71.0 67.0 164.0 12.0 205.0 352.0 0 g 0 0 441.0 86.0 0.0 107.0 43.0 54.0 0.0 872.0 872.0 20.0 0 t 0 0 87.0 19.0 4.0 21.0 872.0 0.0 872.0 4.0 89.0 872.0 0
MA0827.1_rc_shift2 (OLIG3_rc)				; oligos_6nt_mkv2_m2 versus MA0827.1_rc (OLIG3_rc); m=8/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.658977; --rvCATATGkT- ; cor=; Ncor= a 0 0 1915.0 1010.0 275.0 1915.0 0.0 1915.0 22.0 3.0 6.0 132.0 0 c 0 0 176.0 904.0 1915.0 2.0 11.0 72.0 99.0 0.0 208.0 427.0 0 g 0 0 964.0 662.0 4.0 224.0 103.0 26.0 10.0 1915.0 1115.0 204.0 0 t 0 0 265.0 28.0 4.0 56.0 1915.0 0.0 1915.0 222.0 800.0 1915.0 0
MA1570.1_shift2 (TFAP4)				; oligos_6nt_mkv2_m2 versus MA1570.1 (TFAP4); m=9/32; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.658544; --ahCAyrTGkt- ; cor=; Ncor= a 0 0 479.0 217.0 0.0 479.0 0.0 479.0 0.0 0.0 103.0 60.0 0 c 0 0 130.0 144.0 479.0 0.0 220.0 149.0 0.0 3.0 14.0 210.0 0 g 0 0 197.0 0.0 0.0 14.0 161.0 287.0 0.0 479.0 156.0 110.0 0 t 0 0 39.0 129.0 0.0 0.0 479.0 0.0 479.0 0.0 206.0 479.0 0
MA1468.1_rc_shift2 (ATOH7_rc)				; oligos_6nt_mkv2_m2 versus MA1468.1_rc (ATOH7_rc); m=10/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.65825; --rmCATATGkT- ; cor=; Ncor= a 0 0 312.0 291.0 0.0 712.0 0.0 712.0 58.0 0.0 45.0 62.0 0 c 0 0 2.0 261.0 712.0 25.0 78.0 59.0 102.0 0.0 154.0 142.0 0 g 0 0 400.0 155.0 0.0 25.0 180.0 106.0 0.0 712.0 211.0 97.0 0 t 0 0 17.0 5.0 0.0 0.0 712.0 15.0 712.0 0.0 302.0 712.0 0
MA0678.1_rc_shift2 (OLIG2_rc)				; oligos_6nt_mkv2_m2 versus MA0678.1_rc (OLIG2_rc); m=11/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.649925; --rmCATATGkT- ; cor=; Ncor= a 0 0 1609.0 744.0 117.0 1609.0 4.0 1609.0 22.0 0.0 16.0 108.0 0 c 0 0 57.0 866.0 1609.0 0.0 18.0 0.0 53.0 4.0 142.0 283.0 0 g 0 0 689.0 396.0 3.0 159.0 22.0 0.0 2.0 1609.0 929.0 90.0 0 t 0 0 146.0 4.0 10.0 21.0 1609.0 0.0 1609.0 74.0 680.0 1609.0 0
MA0698.2_shift1 (ZBTB18)				; oligos_6nt_mkv2_m2 versus MA0698.2 (ZBTB18); m=12/32; ncol2=11; w=-1; offset=-1; strand=D; shift=1; score=0.639724; -atCCAGATGTk- ; cor=; Ncor= a 0 7064.0 1177.0 3618.0 21.0 13670.0 3.0 13670.0 14.0 3.0 48.0 210.0 0 c 0 753.0 1937.0 13670.0 13670.0 5.0 245.0 1048.0 15.0 1.0 314.0 177.0 0 g 0 2535.0 5212.0 1899.0 3.0 33.0 13670.0 278.0 94.0 13670.0 36.0 5530.0 0 t 0 3319.0 13670.0 60.0 8.0 206.0 6.0 297.0 13670.0 1.0 13670.0 8140.0 0
MA0818.2_rc_shift2 (BHLHE22_rc)				; oligos_6nt_mkv2_m2 versus MA0818.2_rc (BHLHE22_rc); m=13/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.636547; --rmCATATGkT- ; cor=; Ncor= a 0 0 5142.0 3086.0 0.0 8662.0 0.0 8662.0 80.0 0.0 56.0 765.0 0 c 0 0 280.0 4007.0 8662.0 0.0 44.0 75.0 850.0 0.0 1530.0 557.0 0 g 0 0 3520.0 1481.0 0.0 808.0 44.0 59.0 0.0 8662.0 3954.0 491.0 0 t 0 0 448.0 89.0 0.0 90.0 8662.0 0.0 8662.0 0.0 3121.0 8662.0 0
MA1467.3_shift4 (Atoh1)				; oligos_6nt_mkv2_m2 versus MA1467.3 (Atoh1); m=14/32; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.625345; ----CAGATGG-- ; cor=; Ncor= a 0 0 0 0 273.0 20977.0 165.0 21079.0 117.0 280.0 1158.0 0 0 c 0 0 0 0 20657.0 170.0 425.0 115.0 552.0 159.0 2163.0 0 0 g 0 0 0 0 208.0 257.0 18911.0 189.0 99.0 20837.0 15743.0 0 0 t 0 0 0 0 339.0 73.0 1976.0 94.0 20709.0 201.0 2413.0 0 0
MA1642.2_shift4 (NEUROG2)				; oligos_6nt_mkv2_m2 versus MA1642.2 (NEUROG2); m=15/32; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.624055; ----CAGATGG-- ; cor=; Ncor= a 0 0 0 0 278.0 33720.0 400.0 32746.0 649.0 280.0 1523.0 0 0 c 0 0 0 0 33559.0 211.0 793.0 952.0 904.0 205.0 2966.0 0 0 g 0 0 0 0 317.0 301.0 30392.0 418.0 323.0 33422.0 24998.0 0 0 t 0 0 0 0 237.0 159.0 2806.0 275.0 32515.0 484.0 4904.0 0 0
MA1123.3_shift3 (TWIST1)				; oligos_6nt_mkv2_m2 versus MA1123.3 (TWIST1); m=16/32; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.612324; ---CCAGATGt-- ; cor=; Ncor= a 0 0 0 3733.0 377.0 26713.0 440.0 24524.0 357.0 380.0 1801.0 0 0 c 0 0 0 20412.0 26665.0 136.0 1320.0 1687.0 456.0 396.0 2919.0 0 0 g 0 0 0 2336.0 117.0 210.0 24166.0 908.0 288.0 25975.0 4069.0 0 0 t 0 0 0 852.0 174.0 274.0 1407.0 214.0 26232.0 582.0 18544.0 0 0
MA0461.3_shift2 (Atoh1)				; oligos_6nt_mkv2_m2 versus MA0461.3 (Atoh1); m=17/32; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.569842; --rmCATATG--- ; cor=; Ncor= a 0 0 655.0 523.0 42.0 1027.0 17.0 1027.0 22.0 2.0 0 0 0 c 0 0 108.0 334.0 1027.0 20.0 10.0 74.0 4.0 1.0 0 0 0 g 0 0 372.0 149.0 8.0 34.0 136.0 0.0 5.0 1027.0 0 0 0 t 0 0 59.0 21.0 0.0 0.0 1027.0 0.0 1027.0 31.0 0 0 0
MA1638.2_shift4 (HAND2)				; oligos_6nt_mkv2_m2 versus MA1638.2 (HAND2); m=18/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.537924; ----CAGATG--- ; cor=; Ncor= a 0 0 0 0 19.0 29222.0 12.0 30192.0 14.0 234.0 0 0 0 c 0 0 0 0 30062.0 410.0 42.0 30.0 2276.0 149.0 0 0 0 g 0 0 0 0 132.0 647.0 30144.0 38.0 31.0 29851.0 0 0 0 t 0 0 0 0 70.0 4.0 85.0 23.0 27962.0 49.0 0 0 0
MA0095.4_shift3 (Yy1)				; oligos_6nt_mkv2_m2 versus MA0095.4 (Yy1); m=19/32; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.531766; ---CAAAATGG-- ; cor=; Ncor= a 0 0 0 3123.0 41529.0 39666.0 30769.0 41506.0 689.0 561.0 1597.0 0 0 c 0 0 0 33122.0 926.0 1447.0 2536.0 746.0 241.0 165.0 971.0 0 0 g 0 0 0 3684.0 287.0 1320.0 8658.0 712.0 708.0 42263.0 39612.0 0 0 t 0 0 0 3419.0 606.0 915.0 1385.0 384.0 41710.0 359.0 1168.0 0 0
MA1651.2_shift3 (ZFP42)				; oligos_6nt_mkv2_m2 versus MA1651.2 (ZFP42); m=20/32; ncol2=13; w=0; offset=1; strand=D; shift=3; score=0.501998; ---cAArATGGCT ; cor=; Ncor= a 0 0 0 329.0 1608.0 1553.0 817.0 1724.0 6.0 5.0 25.0 31.0 42.0 c 0 0 0 991.0 32.0 54.0 161.0 7.0 13.0 5.0 29.0 1703.0 116.0 g 0 0 0 198.0 79.0 69.0 668.0 13.0 7.0 1741.0 1574.0 7.0 325.0 t 0 0 0 234.0 33.0 76.0 106.0 8.0 1726.0 1.0 124.0 11.0 1269.0
MA1558.2_shift3 (SNAI1)				; oligos_6nt_mkv2_m2 versus MA1558.2 (SNAI1); m=21/32; ncol2=7; w=0; offset=1; strand=D; shift=3; score=0.458508; ---rCAGGTG--- ; cor=; Ncor= a 0 0 0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 0 0 0 c 0 0 0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 0 0 0 g 0 0 0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 0 0 0 t 0 0 0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 0 0 0
MA1999.2_rc_shift5 (Prdm5_rc)				; oligos_6nt_mkv2_m2 versus MA1999.2_rc (Prdm5_rc); m=22/32; ncol2=11; w=0; offset=3; strand=R; shift=5; score=0.454279; -----aGATGGAG ; cor=; Ncor= a 0 0 0 0 0 440.0 93.0 535.0 44.0 15.0 17.0 650.0 30.0 c 0 0 0 0 0 67.0 86.0 128.0 40.0 18.0 30.0 20.0 13.0 g 0 0 0 0 0 145.0 518.0 59.0 81.0 685.0 677.0 31.0 677.0 t 0 0 0 0 0 88.0 43.0 18.0 575.0 22.0 16.0 39.0 20.0
MA0092.2_rc_shift0 (Hand1::Tcf3_rc)				; oligos_6nt_mkv2_m2 versus MA0092.2_rc (Hand1::Tcf3_rc); m=23/32; ncol2=9; w=-2; offset=-2; strand=R; shift=0; score=0.426979; awkCCAGAy---- ; cor=; Ncor= a 16.0 10.0 5.0 1.0 0.0 29.0 1.0 24.0 4.0 0 0 0 0 c 4.0 3.0 1.0 25.0 29.0 0.0 0.0 1.0 15.0 0 0 0 0 g 4.0 0.0 14.0 3.0 0.0 0.0 28.0 2.0 0.0 0 0 0 0 t 5.0 16.0 9.0 0.0 0.0 0.0 0.0 2.0 10.0 0 0 0 0
MA0820.2_rc_shift4 (FIGLA_rc)				; oligos_6nt_mkv2_m2 versus MA0820.2_rc (FIGLA_rc); m=24/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.417534; ----CAGGTG--- ; cor=; Ncor= a 0 0 0 0 65.0 1780.0 0.0 0.0 14.0 29.0 0 0 0 c 0 0 0 0 1780.0 17.0 311.0 527.0 0.0 0.0 0 0 0 g 0 0 0 0 33.0 0.0 1780.0 1780.0 46.0 1780.0 0 0 0 t 0 0 0 0 36.0 56.0 9.0 0.0 1780.0 0.0 0 0 0
MA1108.3_shift4 (MXI1)				; oligos_6nt_mkv2_m2 versus MA1108.3 (MXI1); m=25/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.416968; ----CACATG--- ; cor=; Ncor= a 0 0 0 0 109.0 21870.0 10.0 20506.0 0.0 527.0 0 0 0 c 0 0 0 0 21382.0 1.0 21552.0 0.0 507.0 114.0 0 0 0 g 0 0 0 0 97.0 170.0 18.0 1542.0 0.0 21232.0 0 0 0 t 0 0 0 0 460.0 7.0 468.0 0.0 21541.0 175.0 0 0 0
MA0100.4_rc_shift4 (MYB_rc)				; oligos_6nt_mkv2_m2 versus MA0100.4_rc (MYB_rc); m=26/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.41656; ----CAGTTG--- ; cor=; Ncor= a 0 0 0 0 0.0 1398.0 0.0 6.0 7.0 9.0 0 0 0 c 0 0 0 0 1516.0 68.0 0.0 0.0 39.0 5.0 0 0 0 g 0 0 0 0 3.0 60.0 1527.0 2.0 3.0 1513.0 0 0 0 t 0 0 0 0 8.0 1.0 0.0 1519.0 1478.0 0.0 0 0 0
MA0521.3_rc_shift4 (Tcf12_rc)				; oligos_6nt_mkv2_m2 versus MA0521.3_rc (Tcf12_rc); m=27/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.412143; ----CAGCTG--- ; cor=; Ncor= a 0 0 0 0 374.0 72284.0 836.0 1565.0 341.0 550.0 0 0 0 c 0 0 0 0 72670.0 738.0 1814.0 69780.0 632.0 404.0 0 0 0 g 0 0 0 0 402.0 632.0 69780.0 1814.0 739.0 72674.0 0 0 0 t 0 0 0 0 549.0 341.0 1565.0 836.0 72283.0 367.0 0 0 0
MA1635.2_rc_shift4 (BHLHE22_rc)				; oligos_6nt_mkv2_m2 versus MA1635.2_rc (BHLHE22_rc); m=28/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.407965; ----CAGCTG--- ; cor=; Ncor= a 0 0 0 0 0.0 18267.0 1.0 14.0 0.0 14.0 0 0 0 c 0 0 0 0 18327.0 37.0 53.0 18288.0 52.0 11.0 0 0 0 g 0 0 0 0 15.0 52.0 18288.0 53.0 37.0 18331.0 0 0 0 t 0 0 0 0 14.0 0.0 14.0 1.0 18267.0 0.0 0 0 0
MA1993.2_shift4 (Neurod2)				; oligos_6nt_mkv2_m2 versus MA1993.2 (Neurod2); m=29/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.407003; ----CAGCTG--- ; cor=; Ncor= a 0 0 0 0 14.0 53280.0 8.0 17.0 0.0 39.0 0 0 0 c 0 0 0 0 53913.0 310.0 15.0 53984.0 434.0 58.0 0 0 0 g 0 0 0 0 58.0 434.0 53984.0 15.0 310.0 53913.0 0 0 0 t 0 0 0 0 39.0 0.0 17.0 8.0 53280.0 14.0 0 0 0
MA0633.3_shift4 (Twist2)				; oligos_6nt_mkv2_m2 versus MA0633.3 (Twist2); m=30/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.406933; ----CAGCTG--- ; cor=; Ncor= a 0 0 0 0 15.0 48915.0 9.0 21.0 0.0 60.0 0 0 0 c 0 0 0 0 49473.0 345.0 16.0 49583.0 369.0 81.0 0 0 0 g 0 0 0 0 81.0 369.0 49583.0 16.0 342.0 49473.0 0 0 0 t 0 0 0 0 60.0 0.0 21.0 9.0 48918.0 15.0 0 0 0
MA1997.2_shift4 (Olig2)				; oligos_6nt_mkv2_m2 versus MA1997.2 (Olig2); m=31/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.406287; ----CAGCTG--- ; cor=; Ncor= a 0 0 0 0 10.0 59733.0 14.0 41.0 0.0 50.0 0 0 0 c 0 0 0 0 60968.0 668.0 18.0 61069.0 741.0 114.0 0 0 0 g 0 0 0 0 114.0 741.0 61069.0 18.0 668.0 60968.0 0 0 0 t 0 0 0 0 50.0 0.0 41.0 14.0 59733.0 10.0 0 0 0
MA0103.4_rc_shift4 (ZEB1_rc)				; oligos_6nt_mkv2_m2 versus MA0103.4_rc (ZEB1_rc); m=32/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.404889; ----CAGGTG--- ; cor=; Ncor= a 0 0 0 0 129.0 19269.0 30.0 122.0 1.0 662.0 0 0 0 c 0 0 0 0 19381.0 355.0 649.0 97.0 223.0 158.0 0 0 0 g 0 0 0 0 178.0 501.0 19257.0 19878.0 0.0 19195.0 0 0 0 t 0 0 0 0 441.0 4.0 193.0 32.0 19905.0 114.0 0 0 0