compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf Output files match_table_html $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html alignments_1ton $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab html_index $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html match_table_txt $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html prefix $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf file1 1 11 28 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_7nt_mkv2_m1 | MA0814.3 | oligos_7nt_mkv2_m1 | TFAP2C | 0.917 | 0.750 | 11 | 9 | 9 | 11 | 0.8182 | 0.8182 | 1.0000 | D | 0 |
| oligos_7nt_mkv2_m1 | MA0003.5 | oligos_7nt_mkv2_m1 | TFAP2A | 0.904 | 0.739 | 11 | 9 | 9 | 11 | 0.8182 | 0.8182 | 1.0000 | R | 0 |
| oligos_7nt_mkv2_m1 | MA0812.2 | oligos_7nt_mkv2_m1 | TFAP2B | 0.823 | 0.673 | 11 | 9 | 9 | 11 | 0.8182 | 0.8182 | 1.0000 | R | 0 |
| oligos_7nt_mkv2_m1 | MA2099.1 | oligos_7nt_mkv2_m1 | ZNF770 | 0.911 | 0.662 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | R | 3 |
| oligos_7nt_mkv2_m1 | MA0496.4 | oligos_7nt_mkv2_m1 | MAFK | 0.717 | 0.652 | 11 | 10 | 10 | 11 | 0.9091 | 0.9091 | 1.0000 | R | 1 |
| oligos_7nt_mkv2_m1 | MA1569.2 | oligos_7nt_mkv2_m1 | TFAP2E | 0.773 | 0.632 | 11 | 9 | 9 | 11 | 0.8182 | 0.8182 | 1.0000 | R | 0 |
| oligos_7nt_mkv2_m1 | MA1583.2 | oligos_7nt_mkv2_m1 | ZFP57 | 0.743 | 0.473 | 11 | 7 | 7 | 11 | 0.6364 | 0.6364 | 1.0000 | R | 3 |
| oligos_7nt_mkv2_m1 | MA1710.2 | oligos_7nt_mkv2_m1 | ZNF257 | 0.884 | 0.442 | 11 | 10 | 7 | 14 | 0.5000 | 0.6364 | 0.7000 | D | 4 |
| oligos_7nt_mkv2_m1 | MA2341.1 | oligos_7nt_mkv2_m1 | FEZF2 | 0.732 | 0.427 | 11 | 8 | 7 | 12 | 0.5833 | 0.6364 | 0.8750 | R | -1 |
| oligos_7nt_mkv2_m1 | MA1596.1 | oligos_7nt_mkv2_m1 | ZNF460 | 0.839 | 0.419 | 11 | 16 | 9 | 18 | 0.5000 | 0.8182 | 0.5625 | R | -7 |
| oligos_7nt_mkv2_m1 | MA2002.2 | oligos_7nt_mkv2_m1 | Zfp335 | 0.820 | 0.410 | 11 | 7 | 6 | 12 | 0.5000 | 0.5455 | 0.8571 | R | -1 |
| oligos_7nt_mkv2_m1 | MA2001.2 | oligos_7nt_mkv2_m1 | Six4 | 0.815 | 0.408 | 11 | 7 | 6 | 12 | 0.5000 | 0.5455 | 0.8571 | D | -1 |
Host name rsat Job started 2025-05-16.174502 Job done 2025-05-16.174508 Seconds 1.27 user 1.27 system 0.31 cuser 4.68 ; csystem 0.49