One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift7 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m1_shift7 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=11; shift=7; ncol=18; -------rsCTGAGGChd ; Alignment reference a 0 0 0 0 0 0 0 7 4 0 0 1 25 1 0 0 11 8 c 0 0 0 0 0 0 0 5 9 26 2 0 2 0 0 26 8 3 g 0 0 0 0 0 0 0 11 10 1 2 27 1 25 28 0 2 10 t 0 0 0 0 0 0 0 5 5 1 24 0 0 2 0 2 7 7

MA0814.3_shift7 (TFAP2C)
; oligos_7nt_mkv2_m1 versus MA0814.3 (TFAP2C); m=1/12; ncol2=9; w=0; offset=0; strand=D; shift=7; score=0.750187; -------gCCTGAGGC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3782.0 736.0 482.0 1367.0 1323.0 51058.0 874.0 714.0 4313.0 0 0 c 0 0 0 0 0 0 0 14686.0 57108.0 57617.0 5539.0 3036.0 4733.0 1486.0 1575.0 42758.0 0 0 g 0 0 0 0 0 0 0 37729.0 2273.0 2060.0 4910.0 55222.0 3944.0 57995.0 57916.0 9867.0 0 0 t 0 0 0 0 0 0 0 4622.0 702.0 660.0 49003.0 1238.0 1084.0 464.0 614.0 3881.0 0 0

MA0003.5_rc_shift7 (TFAP2A_rc)
; oligos_7nt_mkv2_m1 versus MA0003.5_rc (TFAP2A_rc); m=2/12; ncol2=9; w=0; offset=0; strand=R; shift=7; score=0.739445; -------sCCTGAGGc-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1204.0 158.0 133.0 433.0 496.0 13767.0 289.0 180.0 1304.0 0 0 c 0 0 0 0 0 0 0 4098.0 15422.0 15432.0 1229.0 1406.0 750.0 212.0 187.0 9961.0 0 0 g 0 0 0 0 0 0 0 9445.0 234.0 217.0 739.0 13536.0 1173.0 15351.0 15321.0 3615.0 0 0 t 0 0 0 0 0 0 0 1221.0 154.0 186.0 13567.0 530.0 278.0 116.0 280.0 1088.0 0 0

MA0812.2_rc_shift7 (TFAP2B_rc)
; oligos_7nt_mkv2_m1 versus MA0812.2_rc (TFAP2B_rc); m=3/12; ncol2=9; w=0; offset=0; strand=R; shift=7; score=0.673286; -------GCCTsrGGC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 25.0 1.0 2.0 14.0 348.0 2716.0 158.0 0.0 30.0 0 0 c 0 0 0 0 0 0 0 299.0 4549.0 4549.0 446.0 1498.0 612.0 1.0 4.0 3940.0 0 0 g 0 0 0 0 0 0 0 4250.0 10.0 4.0 608.0 2126.0 1204.0 4549.0 4549.0 609.0 0 0 t 0 0 0 0 0 0 0 47.0 6.0 235.0 3480.0 576.0 16.0 0.0 0.0 36.0 0 0

MA2099.1_rc_shift10 (ZNF770_rc)
; oligos_7nt_mkv2_m1 versus MA2099.1_rc (ZNF770_rc); m=4/12; ncol2=8; w=0; offset=3; strand=R; shift=10; score=0.662431; ----------kGAGGCyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 724.0 56.0 13889.0 65.0 156.0 126.0 387.0 1052.0 c 0 0 0 0 0 0 0 0 0 0 485.0 86.0 215.0 133.0 681.0 13947.0 9119.0 374.0 g 0 0 0 0 0 0 0 0 0 0 3865.0 14154.0 140.0 14096.0 13393.0 79.0 857.0 12613.0 t 0 0 0 0 0 0 0 0 0 0 9257.0 35.0 87.0 37.0 101.0 179.0 3968.0 292.0

MA0496.4_rc_shift8 (MAFK_rc)
; oligos_7nt_mkv2_m1 versus MA0496.4_rc (MAFK_rc); m=5/12; ncol2=10; w=0; offset=1; strand=R; shift=8; score=0.652061; --------GCTGAGTCAk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2285.0 4361.0 1910.0 1087.0 46798.0 2544.0 1274.0 2565.0 47492.0 3939.0 c 0 0 0 0 0 0 0 0 3327.0 44013.0 1267.0 957.0 1081.0 7573.0 1306.0 46695.0 1058.0 6706.0 g 0 0 0 0 0 0 0 0 43458.0 1921.0 882.0 47872.0 1133.0 39125.0 1670.0 1366.0 1568.0 27000.0 t 0 0 0 0 0 0 0 0 2664.0 1439.0 47675.0 1818.0 2722.0 2492.0 47484.0 1108.0 1616.0 14089.0

MA1569.2_rc_shift7 (TFAP2E_rc)
; oligos_7nt_mkv2_m1 versus MA1569.2_rc (TFAP2E_rc); m=6/12; ncol2=9; w=0; offset=0; strand=R; shift=7; score=0.632368; -------sCCysrGGs-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 1316.0 7858.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0 6818.0 14449.0 14449.0 4463.0 5766.0 2053.0 0.0 0.0 14449.0 0 0 g 0 0 0 0 0 0 0 14449.0 0.0 0.0 2419.0 5928.0 4768.0 14449.0 14449.0 6924.0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 7716.0 1440.0 0.0 0.0 0.0 0.0 0 0

MA1583.2_rc_shift10 (ZFP57_rc)
; oligos_7nt_mkv2_m1 versus MA1583.2_rc (ZFP57_rc); m=7/12; ncol2=7; w=0; offset=3; strand=R; shift=10; score=0.472945; ----------TGCGGCA- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 156.0 187.0 59.0 7.0 36.0 24.0 6143.0 0 c 0 0 0 0 0 0 0 0 0 0 729.0 279.0 6166.0 719.0 16.0 6213.0 140.0 0 g 0 0 0 0 0 0 0 0 0 0 331.0 5828.0 16.0 5595.0 6254.0 71.0 37.0 0 t 0 0 0 0 0 0 0 0 0 0 5116.0 38.0 91.0 11.0 26.0 24.0 12.0 0

MA1710.2_shift11 (ZNF257)
; oligos_7nt_mkv2_m1 versus MA1710.2 (ZNF257); m=8/12; ncol2=10; w=0; offset=4; strand=D; shift=11; score=0.44181; -----------GAGGcrA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1.0 924.0 1.0 1.0 239.0 549.0 832.0 c 0 0 0 0 0 0 0 0 0 0 0 1.0 1.0 1.0 1.0 637.0 55.0 1.0 g 0 0 0 0 0 0 0 0 0 0 0 997.0 1.0 997.0 997.0 1.0 396.0 166.0 t 0 0 0 0 0 0 0 0 0 0 0 1.0 74.0 1.0 1.0 124.0 1.0 1.0

MA2341.1_rc_shift6 (FEZF2_rc)
; oligos_7nt_mkv2_m1 versus MA2341.1_rc (FEZF2_rc); m=9/12; ncol2=8; w=-1; offset=-1; strand=R; shift=6; score=0.426795; ------AGGCTGGG---- ; cor=; Ncor= a 0 0 0 0 0 0 233.0 9.0 5.0 0.0 5.0 3.0 45.0 36.0 0 0 0 0 c 0 0 0 0 0 0 8.0 2.0 28.0 251.0 14.0 0.0 9.0 10.0 0 0 0 0 g 0 0 0 0 0 0 10.0 247.0 224.0 8.0 15.0 258.0 206.0 202.0 0 0 0 0 t 0 0 0 0 0 0 14.0 7.0 8.0 6.0 231.0 4.0 5.0 17.0 0 0 0 0

MA1596.1_rc_shift0 (ZNF460_rc)
; oligos_7nt_mkv2_m1 versus MA1596.1_rc (ZNF460_rc); m=10/12; ncol2=16; w=-7; offset=-7; strand=R; shift=0; score=0.419358; CyyGGGAGGCkGAGGy-- ; cor=; Ncor= a 64.0 29.0 56.0 40.0 9.0 10.0 1570.0 6.0 11.0 35.0 85.0 29.0 1284.0 66.0 114.0 46.0 0 0 c 1147.0 421.0 930.0 27.0 15.0 15.0 17.0 9.0 7.0 1493.0 181.0 47.0 83.0 67.0 185.0 1023.0 0 0 g 158.0 175.0 110.0 1533.0 1583.0 1584.0 12.0 1596.0 1588.0 23.0 495.0 1519.0 218.0 1460.0 1264.0 131.0 0 0 t 243.0 987.0 516.0 12.0 5.0 3.0 13.0 1.0 6.0 61.0 851.0 17.0 27.0 19.0 49.0 412.0 0 0

MA2002.2_rc_shift6 (Zfp335_rc)
; oligos_7nt_mkv2_m1 versus MA2002.2_rc (Zfp335_rc); m=11/12; ncol2=7; w=-1; offset=-1; strand=R; shift=6; score=0.41018; ------TGCCTGa----- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 0.0 2.0 1.0 3.0 0.0 52.0 0 0 0 0 0 c 0 0 0 0 0 0 10.0 1.0 82.0 81.0 0.0 0.0 15.0 0 0 0 0 0 g 0 0 0 0 0 0 1.0 81.0 0.0 2.0 3.0 82.0 5.0 0 0 0 0 0 t 0 0 0 0 0 0 72.0 2.0 0.0 0.0 78.0 2.0 12.0 0 0 0 0 0

MA2001.2_shift6 (Six4)
; oligos_7nt_mkv2_m1 versus MA2001.2 (Six4); m=12/12; ncol2=7; w=-1; offset=-1; strand=D; shift=6; score=0.407675; ------AACCTGA----- ; cor=; Ncor= a 0 0 0 0 0 0 4063.0 3970.0 209.0 480.0 202.0 124.0 4124.0 0 0 0 0 0 c 0 0 0 0 0 0 99.0 112.0 3506.0 3352.0 268.0 146.0 62.0 0 0 0 0 0 g 0 0 0 0 0 0 57.0 62.0 115.0 114.0 210.0 3906.0 52.0 0 0 0 0 0 t 0 0 0 0 0 0 72.0 147.0 461.0 345.0 3611.0 115.0 53.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m1_shift7 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=11; shift=7; ncol=18; -------rsCTGAGGChd ; Alignment reference a 0 0 0 0 0 0 0 7 4 0 0 1 25 1 0 0 11 8 c 0 0 0 0 0 0 0 5 9 26 2 0 2 0 0 26 8 3 g 0 0 0 0 0 0 0 11 10 1 2 27 1 25 28 0 2 10 t 0 0 0 0 0 0 0 5 5 1 24 0 0 2 0 2 7 7
MA0814.3_shift7 (TFAP2C)				; oligos_7nt_mkv2_m1 versus MA0814.3 (TFAP2C); m=1/12; ncol2=9; w=0; offset=0; strand=D; shift=7; score=0.750187; -------gCCTGAGGC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 3782.0 736.0 482.0 1367.0 1323.0 51058.0 874.0 714.0 4313.0 0 0 c 0 0 0 0 0 0 0 14686.0 57108.0 57617.0 5539.0 3036.0 4733.0 1486.0 1575.0 42758.0 0 0 g 0 0 0 0 0 0 0 37729.0 2273.0 2060.0 4910.0 55222.0 3944.0 57995.0 57916.0 9867.0 0 0 t 0 0 0 0 0 0 0 4622.0 702.0 660.0 49003.0 1238.0 1084.0 464.0 614.0 3881.0 0 0
MA0003.5_rc_shift7 (TFAP2A_rc)				; oligos_7nt_mkv2_m1 versus MA0003.5_rc (TFAP2A_rc); m=2/12; ncol2=9; w=0; offset=0; strand=R; shift=7; score=0.739445; -------sCCTGAGGc-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1204.0 158.0 133.0 433.0 496.0 13767.0 289.0 180.0 1304.0 0 0 c 0 0 0 0 0 0 0 4098.0 15422.0 15432.0 1229.0 1406.0 750.0 212.0 187.0 9961.0 0 0 g 0 0 0 0 0 0 0 9445.0 234.0 217.0 739.0 13536.0 1173.0 15351.0 15321.0 3615.0 0 0 t 0 0 0 0 0 0 0 1221.0 154.0 186.0 13567.0 530.0 278.0 116.0 280.0 1088.0 0 0
MA0812.2_rc_shift7 (TFAP2B_rc)				; oligos_7nt_mkv2_m1 versus MA0812.2_rc (TFAP2B_rc); m=3/12; ncol2=9; w=0; offset=0; strand=R; shift=7; score=0.673286; -------GCCTsrGGC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 25.0 1.0 2.0 14.0 348.0 2716.0 158.0 0.0 30.0 0 0 c 0 0 0 0 0 0 0 299.0 4549.0 4549.0 446.0 1498.0 612.0 1.0 4.0 3940.0 0 0 g 0 0 0 0 0 0 0 4250.0 10.0 4.0 608.0 2126.0 1204.0 4549.0 4549.0 609.0 0 0 t 0 0 0 0 0 0 0 47.0 6.0 235.0 3480.0 576.0 16.0 0.0 0.0 36.0 0 0
MA2099.1_rc_shift10 (ZNF770_rc)				; oligos_7nt_mkv2_m1 versus MA2099.1_rc (ZNF770_rc); m=4/12; ncol2=8; w=0; offset=3; strand=R; shift=10; score=0.662431; ----------kGAGGCyG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 724.0 56.0 13889.0 65.0 156.0 126.0 387.0 1052.0 c 0 0 0 0 0 0 0 0 0 0 485.0 86.0 215.0 133.0 681.0 13947.0 9119.0 374.0 g 0 0 0 0 0 0 0 0 0 0 3865.0 14154.0 140.0 14096.0 13393.0 79.0 857.0 12613.0 t 0 0 0 0 0 0 0 0 0 0 9257.0 35.0 87.0 37.0 101.0 179.0 3968.0 292.0
MA0496.4_rc_shift8 (MAFK_rc)				; oligos_7nt_mkv2_m1 versus MA0496.4_rc (MAFK_rc); m=5/12; ncol2=10; w=0; offset=1; strand=R; shift=8; score=0.652061; --------GCTGAGTCAk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2285.0 4361.0 1910.0 1087.0 46798.0 2544.0 1274.0 2565.0 47492.0 3939.0 c 0 0 0 0 0 0 0 0 3327.0 44013.0 1267.0 957.0 1081.0 7573.0 1306.0 46695.0 1058.0 6706.0 g 0 0 0 0 0 0 0 0 43458.0 1921.0 882.0 47872.0 1133.0 39125.0 1670.0 1366.0 1568.0 27000.0 t 0 0 0 0 0 0 0 0 2664.0 1439.0 47675.0 1818.0 2722.0 2492.0 47484.0 1108.0 1616.0 14089.0
MA1569.2_rc_shift7 (TFAP2E_rc)				; oligos_7nt_mkv2_m1 versus MA1569.2_rc (TFAP2E_rc); m=6/12; ncol2=9; w=0; offset=0; strand=R; shift=7; score=0.632368; -------sCCysrGGs-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 1316.0 7858.0 0.0 0.0 0.0 0 0 c 0 0 0 0 0 0 0 6818.0 14449.0 14449.0 4463.0 5766.0 2053.0 0.0 0.0 14449.0 0 0 g 0 0 0 0 0 0 0 14449.0 0.0 0.0 2419.0 5928.0 4768.0 14449.0 14449.0 6924.0 0 0 t 0 0 0 0 0 0 0 0.0 0.0 0.0 7716.0 1440.0 0.0 0.0 0.0 0.0 0 0
MA1583.2_rc_shift10 (ZFP57_rc)				; oligos_7nt_mkv2_m1 versus MA1583.2_rc (ZFP57_rc); m=7/12; ncol2=7; w=0; offset=3; strand=R; shift=10; score=0.472945; ----------TGCGGCA- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 156.0 187.0 59.0 7.0 36.0 24.0 6143.0 0 c 0 0 0 0 0 0 0 0 0 0 729.0 279.0 6166.0 719.0 16.0 6213.0 140.0 0 g 0 0 0 0 0 0 0 0 0 0 331.0 5828.0 16.0 5595.0 6254.0 71.0 37.0 0 t 0 0 0 0 0 0 0 0 0 0 5116.0 38.0 91.0 11.0 26.0 24.0 12.0 0
MA1710.2_shift11 (ZNF257)				; oligos_7nt_mkv2_m1 versus MA1710.2 (ZNF257); m=8/12; ncol2=10; w=0; offset=4; strand=D; shift=11; score=0.44181; -----------GAGGcrA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1.0 924.0 1.0 1.0 239.0 549.0 832.0 c 0 0 0 0 0 0 0 0 0 0 0 1.0 1.0 1.0 1.0 637.0 55.0 1.0 g 0 0 0 0 0 0 0 0 0 0 0 997.0 1.0 997.0 997.0 1.0 396.0 166.0 t 0 0 0 0 0 0 0 0 0 0 0 1.0 74.0 1.0 1.0 124.0 1.0 1.0
MA2341.1_rc_shift6 (FEZF2_rc)				; oligos_7nt_mkv2_m1 versus MA2341.1_rc (FEZF2_rc); m=9/12; ncol2=8; w=-1; offset=-1; strand=R; shift=6; score=0.426795; ------AGGCTGGG---- ; cor=; Ncor= a 0 0 0 0 0 0 233.0 9.0 5.0 0.0 5.0 3.0 45.0 36.0 0 0 0 0 c 0 0 0 0 0 0 8.0 2.0 28.0 251.0 14.0 0.0 9.0 10.0 0 0 0 0 g 0 0 0 0 0 0 10.0 247.0 224.0 8.0 15.0 258.0 206.0 202.0 0 0 0 0 t 0 0 0 0 0 0 14.0 7.0 8.0 6.0 231.0 4.0 5.0 17.0 0 0 0 0
MA1596.1_rc_shift0 (ZNF460_rc)				; oligos_7nt_mkv2_m1 versus MA1596.1_rc (ZNF460_rc); m=10/12; ncol2=16; w=-7; offset=-7; strand=R; shift=0; score=0.419358; CyyGGGAGGCkGAGGy-- ; cor=; Ncor= a 64.0 29.0 56.0 40.0 9.0 10.0 1570.0 6.0 11.0 35.0 85.0 29.0 1284.0 66.0 114.0 46.0 0 0 c 1147.0 421.0 930.0 27.0 15.0 15.0 17.0 9.0 7.0 1493.0 181.0 47.0 83.0 67.0 185.0 1023.0 0 0 g 158.0 175.0 110.0 1533.0 1583.0 1584.0 12.0 1596.0 1588.0 23.0 495.0 1519.0 218.0 1460.0 1264.0 131.0 0 0 t 243.0 987.0 516.0 12.0 5.0 3.0 13.0 1.0 6.0 61.0 851.0 17.0 27.0 19.0 49.0 412.0 0 0
MA2002.2_rc_shift6 (Zfp335_rc)				; oligos_7nt_mkv2_m1 versus MA2002.2_rc (Zfp335_rc); m=11/12; ncol2=7; w=-1; offset=-1; strand=R; shift=6; score=0.41018; ------TGCCTGa----- ; cor=; Ncor= a 0 0 0 0 0 0 1.0 0.0 2.0 1.0 3.0 0.0 52.0 0 0 0 0 0 c 0 0 0 0 0 0 10.0 1.0 82.0 81.0 0.0 0.0 15.0 0 0 0 0 0 g 0 0 0 0 0 0 1.0 81.0 0.0 2.0 3.0 82.0 5.0 0 0 0 0 0 t 0 0 0 0 0 0 72.0 2.0 0.0 0.0 78.0 2.0 12.0 0 0 0 0 0
MA2001.2_shift6 (Six4)				; oligos_7nt_mkv2_m1 versus MA2001.2 (Six4); m=12/12; ncol2=7; w=-1; offset=-1; strand=D; shift=6; score=0.407675; ------AACCTGA----- ; cor=; Ncor= a 0 0 0 0 0 0 4063.0 3970.0 209.0 480.0 202.0 124.0 4124.0 0 0 0 0 0 c 0 0 0 0 0 0 99.0 112.0 3506.0 3352.0 268.0 146.0 62.0 0 0 0 0 0 g 0 0 0 0 0 0 57.0 62.0 115.0 114.0 210.0 3906.0 52.0 0 0 0 0 0 t 0 0 0 0 0 0 72.0 147.0 461.0 345.0 3611.0 115.0 53.0 0 0 0 0 0