One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174416_2025-05-16.174416_Ix0OVW/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m2_shift2 ; 33 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_6nt_mkv2_m2_shift2 (oligos_6nt_mkv2_m2)    
; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=11; shift=2; ncol=13; --dvCAGATGGkd
; Alignment reference
a	0	0	12	13	8	42	3	43	0	1	2	11	13
c	0	0	11	15	33	1	2	0	2	1	2	7	7
g	0	0	12	12	4	2	41	0	0	43	41	12	13
t	0	0	12	7	2	2	1	4	45	2	2	17	14
MA0091.2_rc_shift2 (TAL1::TCF3_rc)
; oligos_6nt_mkv2_m2 versus MA0091.2_rc (TAL1::TCF3_rc); m=1/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.763744; --AmCAKMTGkT-
; cor=; Ncor=
a	0	0	34.0	21.0	1.0	44.0	0.0	32.0	0.0	0.0	0.0	2.0	0
c	0	0	2.0	20.0	43.0	0.0	0.0	11.0	0.0	1.0	0.0	3.0	0
g	0	0	4.0	3.0	0.0	0.0	32.0	1.0	0.0	43.0	24.0	0.0	0
t	0	0	4.0	0.0	0.0	0.0	12.0	0.0	44.0	0.0	20.0	39.0	0
MA1524.3_shift2 (Msgn1)
; oligos_6nt_mkv2_m2 versus MA1524.3 (Msgn1); m=2/32; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.72739; --raCAAATGGy-
; cor=; Ncor=
a	0	0	193.0	363.0	0.0	537.0	460.0	537.0	18.0	1.0	5.0	37.0	0
c	0	0	21.0	128.0	539.0	3.0	8.0	4.0	6.0	2.0	8.0	140.0	0
g	0	0	324.0	46.0	2.0	0.0	52.0	0.0	3.0	531.0	512.0	50.0	0
t	0	0	4.0	5.0	1.0	2.0	22.0	1.0	515.0	8.0	17.0	315.0	0
MA1109.2_shift3 (NEUROD1)
; oligos_6nt_mkv2_m2 versus MA1109.2 (NEUROD1); m=3/32; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.707951; ---aCAGATGG--
; cor=; Ncor=
a	0	0	0	1289.0	17.0	2241.0	16.0	2034.0	55.0	13.0	59.0	0	0
c	0	0	0	452.0	2240.0	7.0	24.0	150.0	51.0	7.0	93.0	0	0
g	0	0	0	494.0	13.0	16.0	2152.0	77.0	19.0	2231.0	1962.0	0	0
t	0	0	0	47.0	12.0	18.0	90.0	21.0	2157.0	31.0	168.0	0	0
MA1618.2_shift3 (Ptf1A)
; oligos_6nt_mkv2_m2 versus MA1618.2 (Ptf1A); m=4/32; ncol2=9; w=0; offset=1; strand=D; shift=3; score=0.705279; ---aCAGATGtt-
; cor=; Ncor=
a	0	0	0	8554.0	133.0	14064.0	250.0	12132.0	126.0	241.0	965.0	1511.0	0
c	0	0	0	2747.0	14006.0	118.0	466.0	1724.0	224.0	122.0	2058.0	2341.0	0
g	0	0	0	2414.0	130.0	153.0	13072.0	437.0	118.0	13868.0	2854.0	2295.0	0
t	0	0	0	726.0	172.0	106.0	653.0	148.0	13973.0	210.0	8564.0	8294.0	0
MA0668.3_shift3 (Neurod2)
; oligos_6nt_mkv2_m2 versus MA0668.3 (Neurod2); m=5/32; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.703385; ---aCAGATGG--
; cor=; Ncor=
a	0	0	0	20692.0	214.0	32478.0	289.0	29423.0	752.0	179.0	586.0	0	0
c	0	0	0	5909.0	32326.0	131.0	532.0	2571.0	548.0	151.0	1828.0	0	0
g	0	0	0	5852.0	246.0	211.0	30524.0	708.0	313.0	32176.0	27651.0	0	0
t	0	0	0	504.0	171.0	137.0	1612.0	255.0	31344.0	451.0	2892.0	0	0
MA0607.2_shift2 (BHLHA15)
; oligos_6nt_mkv2_m2 versus MA0607.2 (BHLHA15); m=6/32; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.685198; --aCCATATGGt-
; cor=; Ncor=
a	0	0	8097.0	2744.0	41.0	11369.0	0.0	11369.0	50.0	0.0	37.0	1749.0	0
c	0	0	757.0	8626.0	11369.0	14.0	59.0	373.0	223.0	0.0	778.0	3251.0	0
g	0	0	3272.0	774.0	0.0	215.0	392.0	56.0	6.0	11369.0	8585.0	772.0	0
t	0	0	1748.0	33.0	0.0	44.0	11369.0	0.0	11369.0	38.0	2784.0	8119.0	0
MA1568.2_rc_shift2 (TCF21_rc)
; oligos_6nt_mkv2_m2 versus MA1568.2_rc (TCF21_rc); m=7/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.682183; --rmCATATGGt-
; cor=; Ncor=
a	0	0	431.0	339.0	18.0	872.0	0.0	872.0	14.0	2.0	28.0	194.0	0
c	0	0	6.0	533.0	872.0	0.0	71.0	67.0	164.0	12.0	205.0	352.0	0
g	0	0	441.0	86.0	0.0	107.0	43.0	54.0	0.0	872.0	872.0	20.0	0
t	0	0	87.0	19.0	4.0	21.0	872.0	0.0	872.0	4.0	89.0	872.0	0
MA0827.1_rc_shift2 (OLIG3_rc)
; oligos_6nt_mkv2_m2 versus MA0827.1_rc (OLIG3_rc); m=8/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.658977; --rvCATATGkT-
; cor=; Ncor=
a	0	0	1915.0	1010.0	275.0	1915.0	0.0	1915.0	22.0	3.0	6.0	132.0	0
c	0	0	176.0	904.0	1915.0	2.0	11.0	72.0	99.0	0.0	208.0	427.0	0
g	0	0	964.0	662.0	4.0	224.0	103.0	26.0	10.0	1915.0	1115.0	204.0	0
t	0	0	265.0	28.0	4.0	56.0	1915.0	0.0	1915.0	222.0	800.0	1915.0	0
MA1570.1_shift2 (TFAP4)
; oligos_6nt_mkv2_m2 versus MA1570.1 (TFAP4); m=9/32; ncol2=10; w=0; offset=0; strand=D; shift=2; score=0.658544; --ahCAyrTGkt-
; cor=; Ncor=
a	0	0	479.0	217.0	0.0	479.0	0.0	479.0	0.0	0.0	103.0	60.0	0
c	0	0	130.0	144.0	479.0	0.0	220.0	149.0	0.0	3.0	14.0	210.0	0
g	0	0	197.0	0.0	0.0	14.0	161.0	287.0	0.0	479.0	156.0	110.0	0
t	0	0	39.0	129.0	0.0	0.0	479.0	0.0	479.0	0.0	206.0	479.0	0
MA1468.1_rc_shift2 (ATOH7_rc)
; oligos_6nt_mkv2_m2 versus MA1468.1_rc (ATOH7_rc); m=10/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.65825; --rmCATATGkT-
; cor=; Ncor=
a	0	0	312.0	291.0	0.0	712.0	0.0	712.0	58.0	0.0	45.0	62.0	0
c	0	0	2.0	261.0	712.0	25.0	78.0	59.0	102.0	0.0	154.0	142.0	0
g	0	0	400.0	155.0	0.0	25.0	180.0	106.0	0.0	712.0	211.0	97.0	0
t	0	0	17.0	5.0	0.0	0.0	712.0	15.0	712.0	0.0	302.0	712.0	0
MA0678.1_rc_shift2 (OLIG2_rc)
; oligos_6nt_mkv2_m2 versus MA0678.1_rc (OLIG2_rc); m=11/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.649925; --rmCATATGkT-
; cor=; Ncor=
a	0	0	1609.0	744.0	117.0	1609.0	4.0	1609.0	22.0	0.0	16.0	108.0	0
c	0	0	57.0	866.0	1609.0	0.0	18.0	0.0	53.0	4.0	142.0	283.0	0
g	0	0	689.0	396.0	3.0	159.0	22.0	0.0	2.0	1609.0	929.0	90.0	0
t	0	0	146.0	4.0	10.0	21.0	1609.0	0.0	1609.0	74.0	680.0	1609.0	0
MA0698.2_shift1 (ZBTB18)
; oligos_6nt_mkv2_m2 versus MA0698.2 (ZBTB18); m=12/32; ncol2=11; w=-1; offset=-1; strand=D; shift=1; score=0.639724; -atCCAGATGTk-
; cor=; Ncor=
a	0	7064.0	1177.0	3618.0	21.0	13670.0	3.0	13670.0	14.0	3.0	48.0	210.0	0
c	0	753.0	1937.0	13670.0	13670.0	5.0	245.0	1048.0	15.0	1.0	314.0	177.0	0
g	0	2535.0	5212.0	1899.0	3.0	33.0	13670.0	278.0	94.0	13670.0	36.0	5530.0	0
t	0	3319.0	13670.0	60.0	8.0	206.0	6.0	297.0	13670.0	1.0	13670.0	8140.0	0
MA0818.2_rc_shift2 (BHLHE22_rc)
; oligos_6nt_mkv2_m2 versus MA0818.2_rc (BHLHE22_rc); m=13/32; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.636547; --rmCATATGkT-
; cor=; Ncor=
a	0	0	5142.0	3086.0	0.0	8662.0	0.0	8662.0	80.0	0.0	56.0	765.0	0
c	0	0	280.0	4007.0	8662.0	0.0	44.0	75.0	850.0	0.0	1530.0	557.0	0
g	0	0	3520.0	1481.0	0.0	808.0	44.0	59.0	0.0	8662.0	3954.0	491.0	0
t	0	0	448.0	89.0	0.0	90.0	8662.0	0.0	8662.0	0.0	3121.0	8662.0	0
MA1467.3_shift4 (Atoh1)
; oligos_6nt_mkv2_m2 versus MA1467.3 (Atoh1); m=14/32; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.625345; ----CAGATGG--
; cor=; Ncor=
a	0	0	0	0	273.0	20977.0	165.0	21079.0	117.0	280.0	1158.0	0	0
c	0	0	0	0	20657.0	170.0	425.0	115.0	552.0	159.0	2163.0	0	0
g	0	0	0	0	208.0	257.0	18911.0	189.0	99.0	20837.0	15743.0	0	0
t	0	0	0	0	339.0	73.0	1976.0	94.0	20709.0	201.0	2413.0	0	0
MA1642.2_shift4 (NEUROG2)
; oligos_6nt_mkv2_m2 versus MA1642.2 (NEUROG2); m=15/32; ncol2=7; w=0; offset=2; strand=D; shift=4; score=0.624055; ----CAGATGG--
; cor=; Ncor=
a	0	0	0	0	278.0	33720.0	400.0	32746.0	649.0	280.0	1523.0	0	0
c	0	0	0	0	33559.0	211.0	793.0	952.0	904.0	205.0	2966.0	0	0
g	0	0	0	0	317.0	301.0	30392.0	418.0	323.0	33422.0	24998.0	0	0
t	0	0	0	0	237.0	159.0	2806.0	275.0	32515.0	484.0	4904.0	0	0
MA1123.3_shift3 (TWIST1)
; oligos_6nt_mkv2_m2 versus MA1123.3 (TWIST1); m=16/32; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.612324; ---CCAGATGt--
; cor=; Ncor=
a	0	0	0	3733.0	377.0	26713.0	440.0	24524.0	357.0	380.0	1801.0	0	0
c	0	0	0	20412.0	26665.0	136.0	1320.0	1687.0	456.0	396.0	2919.0	0	0
g	0	0	0	2336.0	117.0	210.0	24166.0	908.0	288.0	25975.0	4069.0	0	0
t	0	0	0	852.0	174.0	274.0	1407.0	214.0	26232.0	582.0	18544.0	0	0
MA0461.3_shift2 (Atoh1)
; oligos_6nt_mkv2_m2 versus MA0461.3 (Atoh1); m=17/32; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.569842; --rmCATATG---
; cor=; Ncor=
a	0	0	655.0	523.0	42.0	1027.0	17.0	1027.0	22.0	2.0	0	0	0
c	0	0	108.0	334.0	1027.0	20.0	10.0	74.0	4.0	1.0	0	0	0
g	0	0	372.0	149.0	8.0	34.0	136.0	0.0	5.0	1027.0	0	0	0
t	0	0	59.0	21.0	0.0	0.0	1027.0	0.0	1027.0	31.0	0	0	0
MA1638.2_shift4 (HAND2)
; oligos_6nt_mkv2_m2 versus MA1638.2 (HAND2); m=18/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.537924; ----CAGATG---
; cor=; Ncor=
a	0	0	0	0	19.0	29222.0	12.0	30192.0	14.0	234.0	0	0	0
c	0	0	0	0	30062.0	410.0	42.0	30.0	2276.0	149.0	0	0	0
g	0	0	0	0	132.0	647.0	30144.0	38.0	31.0	29851.0	0	0	0
t	0	0	0	0	70.0	4.0	85.0	23.0	27962.0	49.0	0	0	0
MA0095.4_shift3 (Yy1)
; oligos_6nt_mkv2_m2 versus MA0095.4 (Yy1); m=19/32; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.531766; ---CAAAATGG--
; cor=; Ncor=
a	0	0	0	3123.0	41529.0	39666.0	30769.0	41506.0	689.0	561.0	1597.0	0	0
c	0	0	0	33122.0	926.0	1447.0	2536.0	746.0	241.0	165.0	971.0	0	0
g	0	0	0	3684.0	287.0	1320.0	8658.0	712.0	708.0	42263.0	39612.0	0	0
t	0	0	0	3419.0	606.0	915.0	1385.0	384.0	41710.0	359.0	1168.0	0	0
MA1651.2_shift3 (ZFP42)
; oligos_6nt_mkv2_m2 versus MA1651.2 (ZFP42); m=20/32; ncol2=13; w=0; offset=1; strand=D; shift=3; score=0.501998; ---cAArATGGCT
; cor=; Ncor=
a	0	0	0	329.0	1608.0	1553.0	817.0	1724.0	6.0	5.0	25.0	31.0	42.0
c	0	0	0	991.0	32.0	54.0	161.0	7.0	13.0	5.0	29.0	1703.0	116.0
g	0	0	0	198.0	79.0	69.0	668.0	13.0	7.0	1741.0	1574.0	7.0	325.0
t	0	0	0	234.0	33.0	76.0	106.0	8.0	1726.0	1.0	124.0	11.0	1269.0
MA1558.2_shift3 (SNAI1)
; oligos_6nt_mkv2_m2 versus MA1558.2 (SNAI1); m=21/32; ncol2=7; w=0; offset=1; strand=D; shift=3; score=0.458508; ---rCAGGTG---
; cor=; Ncor=
a	0	0	0	6993.0	446.0	19982.0	1766.0	72.0	38.0	706.0	0	0	0
c	0	0	0	501.0	19982.0	297.0	517.0	5.0	0.0	0.0	0	0	0
g	0	0	0	12989.0	275.0	91.0	19982.0	19982.0	42.0	19982.0	0	0	0
t	0	0	0	3518.0	340.0	568.0	306.0	28.0	19982.0	311.0	0	0	0
MA1999.2_rc_shift5 (Prdm5_rc)
; oligos_6nt_mkv2_m2 versus MA1999.2_rc (Prdm5_rc); m=22/32; ncol2=11; w=0; offset=3; strand=R; shift=5; score=0.454279; -----aGATGGAG
; cor=; Ncor=
a	0	0	0	0	0	440.0	93.0	535.0	44.0	15.0	17.0	650.0	30.0
c	0	0	0	0	0	67.0	86.0	128.0	40.0	18.0	30.0	20.0	13.0
g	0	0	0	0	0	145.0	518.0	59.0	81.0	685.0	677.0	31.0	677.0
t	0	0	0	0	0	88.0	43.0	18.0	575.0	22.0	16.0	39.0	20.0
MA0092.2_rc_shift0 (Hand1::Tcf3_rc)
; oligos_6nt_mkv2_m2 versus MA0092.2_rc (Hand1::Tcf3_rc); m=23/32; ncol2=9; w=-2; offset=-2; strand=R; shift=0; score=0.426979; awkCCAGAy----
; cor=; Ncor=
a	16.0	10.0	5.0	1.0	0.0	29.0	1.0	24.0	4.0	0	0	0	0
c	4.0	3.0	1.0	25.0	29.0	0.0	0.0	1.0	15.0	0	0	0	0
g	4.0	0.0	14.0	3.0	0.0	0.0	28.0	2.0	0.0	0	0	0	0
t	5.0	16.0	9.0	0.0	0.0	0.0	0.0	2.0	10.0	0	0	0	0
MA0820.2_rc_shift4 (FIGLA_rc)
; oligos_6nt_mkv2_m2 versus MA0820.2_rc (FIGLA_rc); m=24/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.417534; ----CAGGTG---
; cor=; Ncor=
a	0	0	0	0	65.0	1780.0	0.0	0.0	14.0	29.0	0	0	0
c	0	0	0	0	1780.0	17.0	311.0	527.0	0.0	0.0	0	0	0
g	0	0	0	0	33.0	0.0	1780.0	1780.0	46.0	1780.0	0	0	0
t	0	0	0	0	36.0	56.0	9.0	0.0	1780.0	0.0	0	0	0
MA1108.3_shift4 (MXI1)
; oligos_6nt_mkv2_m2 versus MA1108.3 (MXI1); m=25/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.416968; ----CACATG---
; cor=; Ncor=
a	0	0	0	0	109.0	21870.0	10.0	20506.0	0.0	527.0	0	0	0
c	0	0	0	0	21382.0	1.0	21552.0	0.0	507.0	114.0	0	0	0
g	0	0	0	0	97.0	170.0	18.0	1542.0	0.0	21232.0	0	0	0
t	0	0	0	0	460.0	7.0	468.0	0.0	21541.0	175.0	0	0	0
MA0100.4_rc_shift4 (MYB_rc)
; oligos_6nt_mkv2_m2 versus MA0100.4_rc (MYB_rc); m=26/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.41656; ----CAGTTG---
; cor=; Ncor=
a	0	0	0	0	0.0	1398.0	0.0	6.0	7.0	9.0	0	0	0
c	0	0	0	0	1516.0	68.0	0.0	0.0	39.0	5.0	0	0	0
g	0	0	0	0	3.0	60.0	1527.0	2.0	3.0	1513.0	0	0	0
t	0	0	0	0	8.0	1.0	0.0	1519.0	1478.0	0.0	0	0	0
MA0521.3_rc_shift4 (Tcf12_rc)
; oligos_6nt_mkv2_m2 versus MA0521.3_rc (Tcf12_rc); m=27/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.412143; ----CAGCTG---
; cor=; Ncor=
a	0	0	0	0	374.0	72284.0	836.0	1565.0	341.0	550.0	0	0	0
c	0	0	0	0	72670.0	738.0	1814.0	69780.0	632.0	404.0	0	0	0
g	0	0	0	0	402.0	632.0	69780.0	1814.0	739.0	72674.0	0	0	0
t	0	0	0	0	549.0	341.0	1565.0	836.0	72283.0	367.0	0	0	0
MA1635.2_rc_shift4 (BHLHE22_rc)
; oligos_6nt_mkv2_m2 versus MA1635.2_rc (BHLHE22_rc); m=28/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.407965; ----CAGCTG---
; cor=; Ncor=
a	0	0	0	0	0.0	18267.0	1.0	14.0	0.0	14.0	0	0	0
c	0	0	0	0	18327.0	37.0	53.0	18288.0	52.0	11.0	0	0	0
g	0	0	0	0	15.0	52.0	18288.0	53.0	37.0	18331.0	0	0	0
t	0	0	0	0	14.0	0.0	14.0	1.0	18267.0	0.0	0	0	0
MA1993.2_shift4 (Neurod2)
; oligos_6nt_mkv2_m2 versus MA1993.2 (Neurod2); m=29/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.407003; ----CAGCTG---
; cor=; Ncor=
a	0	0	0	0	14.0	53280.0	8.0	17.0	0.0	39.0	0	0	0
c	0	0	0	0	53913.0	310.0	15.0	53984.0	434.0	58.0	0	0	0
g	0	0	0	0	58.0	434.0	53984.0	15.0	310.0	53913.0	0	0	0
t	0	0	0	0	39.0	0.0	17.0	8.0	53280.0	14.0	0	0	0
MA0633.3_shift4 (Twist2)
; oligos_6nt_mkv2_m2 versus MA0633.3 (Twist2); m=30/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.406933; ----CAGCTG---
; cor=; Ncor=
a	0	0	0	0	15.0	48915.0	9.0	21.0	0.0	60.0	0	0	0
c	0	0	0	0	49473.0	345.0	16.0	49583.0	369.0	81.0	0	0	0
g	0	0	0	0	81.0	369.0	49583.0	16.0	342.0	49473.0	0	0	0
t	0	0	0	0	60.0	0.0	21.0	9.0	48918.0	15.0	0	0	0
MA1997.2_shift4 (Olig2)
; oligos_6nt_mkv2_m2 versus MA1997.2 (Olig2); m=31/32; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.406287; ----CAGCTG---
; cor=; Ncor=
a	0	0	0	0	10.0	59733.0	14.0	41.0	0.0	50.0	0	0	0
c	0	0	0	0	60968.0	668.0	18.0	61069.0	741.0	114.0	0	0	0
g	0	0	0	0	114.0	741.0	61069.0	18.0	668.0	60968.0	0	0	0
t	0	0	0	0	50.0	0.0	41.0	14.0	59733.0	10.0	0	0	0
MA0103.4_rc_shift4 (ZEB1_rc)
; oligos_6nt_mkv2_m2 versus MA0103.4_rc (ZEB1_rc); m=32/32; ncol2=6; w=0; offset=2; strand=R; shift=4; score=0.404889; ----CAGGTG---
; cor=; Ncor=
a	0	0	0	0	129.0	19269.0	30.0	122.0	1.0	662.0	0	0	0
c	0	0	0	0	19381.0	355.0	649.0	97.0	223.0	158.0	0	0	0
g	0	0	0	0	178.0	501.0	19257.0	19878.0	0.0	19195.0	0	0	0
t	0	0	0	0	441.0	4.0	193.0	32.0	19905.0	114.0	0	0	0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift7 ; 13 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv2_m1_shift7 (oligos_7nt_mkv2_m1)    
; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=11; shift=7; ncol=18; -------rsCTGAGGChd
; Alignment reference
a	0	0	0	0	0	0	0	7	4	0	0	1	25	1	0	0	11	8
c	0	0	0	0	0	0	0	5	9	26	2	0	2	0	0	26	8	3
g	0	0	0	0	0	0	0	11	10	1	2	27	1	25	28	0	2	10
t	0	0	0	0	0	0	0	5	5	1	24	0	0	2	0	2	7	7
MA0814.3_shift7 (TFAP2C)
; oligos_7nt_mkv2_m1 versus MA0814.3 (TFAP2C); m=1/12; ncol2=9; w=0; offset=0; strand=D; shift=7; score=0.750187; -------gCCTGAGGC--
; cor=; Ncor=
a	0	0	0	0	0	0	0	3782.0	736.0	482.0	1367.0	1323.0	51058.0	874.0	714.0	4313.0	0	0
c	0	0	0	0	0	0	0	14686.0	57108.0	57617.0	5539.0	3036.0	4733.0	1486.0	1575.0	42758.0	0	0
g	0	0	0	0	0	0	0	37729.0	2273.0	2060.0	4910.0	55222.0	3944.0	57995.0	57916.0	9867.0	0	0
t	0	0	0	0	0	0	0	4622.0	702.0	660.0	49003.0	1238.0	1084.0	464.0	614.0	3881.0	0	0
MA0003.5_rc_shift7 (TFAP2A_rc)
; oligos_7nt_mkv2_m1 versus MA0003.5_rc (TFAP2A_rc); m=2/12; ncol2=9; w=0; offset=0; strand=R; shift=7; score=0.739445; -------sCCTGAGGc--
; cor=; Ncor=
a	0	0	0	0	0	0	0	1204.0	158.0	133.0	433.0	496.0	13767.0	289.0	180.0	1304.0	0	0
c	0	0	0	0	0	0	0	4098.0	15422.0	15432.0	1229.0	1406.0	750.0	212.0	187.0	9961.0	0	0
g	0	0	0	0	0	0	0	9445.0	234.0	217.0	739.0	13536.0	1173.0	15351.0	15321.0	3615.0	0	0
t	0	0	0	0	0	0	0	1221.0	154.0	186.0	13567.0	530.0	278.0	116.0	280.0	1088.0	0	0
MA0812.2_rc_shift7 (TFAP2B_rc)
; oligos_7nt_mkv2_m1 versus MA0812.2_rc (TFAP2B_rc); m=3/12; ncol2=9; w=0; offset=0; strand=R; shift=7; score=0.673286; -------GCCTsrGGC--
; cor=; Ncor=
a	0	0	0	0	0	0	0	25.0	1.0	2.0	14.0	348.0	2716.0	158.0	0.0	30.0	0	0
c	0	0	0	0	0	0	0	299.0	4549.0	4549.0	446.0	1498.0	612.0	1.0	4.0	3940.0	0	0
g	0	0	0	0	0	0	0	4250.0	10.0	4.0	608.0	2126.0	1204.0	4549.0	4549.0	609.0	0	0
t	0	0	0	0	0	0	0	47.0	6.0	235.0	3480.0	576.0	16.0	0.0	0.0	36.0	0	0
MA2099.1_rc_shift10 (ZNF770_rc)
; oligos_7nt_mkv2_m1 versus MA2099.1_rc (ZNF770_rc); m=4/12; ncol2=8; w=0; offset=3; strand=R; shift=10; score=0.662431; ----------kGAGGCyG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	724.0	56.0	13889.0	65.0	156.0	126.0	387.0	1052.0
c	0	0	0	0	0	0	0	0	0	0	485.0	86.0	215.0	133.0	681.0	13947.0	9119.0	374.0
g	0	0	0	0	0	0	0	0	0	0	3865.0	14154.0	140.0	14096.0	13393.0	79.0	857.0	12613.0
t	0	0	0	0	0	0	0	0	0	0	9257.0	35.0	87.0	37.0	101.0	179.0	3968.0	292.0
MA0496.4_rc_shift8 (MAFK_rc)
; oligos_7nt_mkv2_m1 versus MA0496.4_rc (MAFK_rc); m=5/12; ncol2=10; w=0; offset=1; strand=R; shift=8; score=0.652061; --------GCTGAGTCAk
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	2285.0	4361.0	1910.0	1087.0	46798.0	2544.0	1274.0	2565.0	47492.0	3939.0
c	0	0	0	0	0	0	0	0	3327.0	44013.0	1267.0	957.0	1081.0	7573.0	1306.0	46695.0	1058.0	6706.0
g	0	0	0	0	0	0	0	0	43458.0	1921.0	882.0	47872.0	1133.0	39125.0	1670.0	1366.0	1568.0	27000.0
t	0	0	0	0	0	0	0	0	2664.0	1439.0	47675.0	1818.0	2722.0	2492.0	47484.0	1108.0	1616.0	14089.0
MA1569.2_rc_shift7 (TFAP2E_rc)
; oligos_7nt_mkv2_m1 versus MA1569.2_rc (TFAP2E_rc); m=6/12; ncol2=9; w=0; offset=0; strand=R; shift=7; score=0.632368; -------sCCysrGGs--
; cor=; Ncor=
a	0	0	0	0	0	0	0	0.0	0.0	0.0	0.0	1316.0	7858.0	0.0	0.0	0.0	0	0
c	0	0	0	0	0	0	0	6818.0	14449.0	14449.0	4463.0	5766.0	2053.0	0.0	0.0	14449.0	0	0
g	0	0	0	0	0	0	0	14449.0	0.0	0.0	2419.0	5928.0	4768.0	14449.0	14449.0	6924.0	0	0
t	0	0	0	0	0	0	0	0.0	0.0	0.0	7716.0	1440.0	0.0	0.0	0.0	0.0	0	0
MA1583.2_rc_shift10 (ZFP57_rc)
; oligos_7nt_mkv2_m1 versus MA1583.2_rc (ZFP57_rc); m=7/12; ncol2=7; w=0; offset=3; strand=R; shift=10; score=0.472945; ----------TGCGGCA-
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	156.0	187.0	59.0	7.0	36.0	24.0	6143.0	0
c	0	0	0	0	0	0	0	0	0	0	729.0	279.0	6166.0	719.0	16.0	6213.0	140.0	0
g	0	0	0	0	0	0	0	0	0	0	331.0	5828.0	16.0	5595.0	6254.0	71.0	37.0	0
t	0	0	0	0	0	0	0	0	0	0	5116.0	38.0	91.0	11.0	26.0	24.0	12.0	0
MA1710.2_shift11 (ZNF257)
; oligos_7nt_mkv2_m1 versus MA1710.2 (ZNF257); m=8/12; ncol2=10; w=0; offset=4; strand=D; shift=11; score=0.44181; -----------GAGGcrA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	0	1.0	924.0	1.0	1.0	239.0	549.0	832.0
c	0	0	0	0	0	0	0	0	0	0	0	1.0	1.0	1.0	1.0	637.0	55.0	1.0
g	0	0	0	0	0	0	0	0	0	0	0	997.0	1.0	997.0	997.0	1.0	396.0	166.0
t	0	0	0	0	0	0	0	0	0	0	0	1.0	74.0	1.0	1.0	124.0	1.0	1.0
MA2341.1_rc_shift6 (FEZF2_rc)
; oligos_7nt_mkv2_m1 versus MA2341.1_rc (FEZF2_rc); m=9/12; ncol2=8; w=-1; offset=-1; strand=R; shift=6; score=0.426795; ------AGGCTGGG----
; cor=; Ncor=
a	0	0	0	0	0	0	233.0	9.0	5.0	0.0	5.0	3.0	45.0	36.0	0	0	0	0
c	0	0	0	0	0	0	8.0	2.0	28.0	251.0	14.0	0.0	9.0	10.0	0	0	0	0
g	0	0	0	0	0	0	10.0	247.0	224.0	8.0	15.0	258.0	206.0	202.0	0	0	0	0
t	0	0	0	0	0	0	14.0	7.0	8.0	6.0	231.0	4.0	5.0	17.0	0	0	0	0
MA1596.1_rc_shift0 (ZNF460_rc)
; oligos_7nt_mkv2_m1 versus MA1596.1_rc (ZNF460_rc); m=10/12; ncol2=16; w=-7; offset=-7; strand=R; shift=0; score=0.419358; CyyGGGAGGCkGAGGy--
; cor=; Ncor=
a	64.0	29.0	56.0	40.0	9.0	10.0	1570.0	6.0	11.0	35.0	85.0	29.0	1284.0	66.0	114.0	46.0	0	0
c	1147.0	421.0	930.0	27.0	15.0	15.0	17.0	9.0	7.0	1493.0	181.0	47.0	83.0	67.0	185.0	1023.0	0	0
g	158.0	175.0	110.0	1533.0	1583.0	1584.0	12.0	1596.0	1588.0	23.0	495.0	1519.0	218.0	1460.0	1264.0	131.0	0	0
t	243.0	987.0	516.0	12.0	5.0	3.0	13.0	1.0	6.0	61.0	851.0	17.0	27.0	19.0	49.0	412.0	0	0
MA2002.2_rc_shift6 (Zfp335_rc)
; oligos_7nt_mkv2_m1 versus MA2002.2_rc (Zfp335_rc); m=11/12; ncol2=7; w=-1; offset=-1; strand=R; shift=6; score=0.41018; ------TGCCTGa-----
; cor=; Ncor=
a	0	0	0	0	0	0	1.0	0.0	2.0	1.0	3.0	0.0	52.0	0	0	0	0	0
c	0	0	0	0	0	0	10.0	1.0	82.0	81.0	0.0	0.0	15.0	0	0	0	0	0
g	0	0	0	0	0	0	1.0	81.0	0.0	2.0	3.0	82.0	5.0	0	0	0	0	0
t	0	0	0	0	0	0	72.0	2.0	0.0	0.0	78.0	2.0	12.0	0	0	0	0	0
MA2001.2_shift6 (Six4)
; oligos_7nt_mkv2_m1 versus MA2001.2 (Six4); m=12/12; ncol2=7; w=-1; offset=-1; strand=D; shift=6; score=0.407675; ------AACCTGA-----
; cor=; Ncor=
a	0	0	0	0	0	0	4063.0	3970.0	209.0	480.0	202.0	124.0	4124.0	0	0	0	0	0
c	0	0	0	0	0	0	99.0	112.0	3506.0	3352.0	268.0	146.0	62.0	0	0	0	0	0
g	0	0	0	0	0	0	57.0	62.0	115.0	114.0	210.0	3906.0	52.0	0	0	0	0	0
t	0	0	0	0	0	0	72.0	147.0	461.0	345.0	3611.0	115.0	53.0	0	0	0	0	0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m1_shift2 ; 19 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)    
; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=11; shift=2; ncol=13; --crCCTCAGCct
; Alignment reference
a	0	0	9	12	5	2	0	0	34	2	3	7	6
c	0	0	11	4	31	35	2	33	3	0	31	14	9
g	0	0	8	12	0	0	3	1	0	35	1	7	8
t	0	0	9	9	1	0	32	3	0	0	2	9	14
MA0814.3_rc_shift3 (TFAP2C_rc)
; oligos_6nt_mkv2_m1 versus MA0814.3_rc (TFAP2C_rc); m=1/18; ncol2=9; w=0; offset=1; strand=R; shift=3; score=0.637224; ---GCCTCAGGc-
; cor=; Ncor=
a	0	0	0	3881.0	614.0	464.0	1084.0	1238.0	49003.0	660.0	702.0	4622.0	0
c	0	0	0	9867.0	57916.0	57995.0	3944.0	55222.0	4910.0	2060.0	2273.0	37729.0	0
g	0	0	0	42758.0	1575.0	1486.0	4733.0	3036.0	5539.0	57617.0	57108.0	14686.0	0
t	0	0	0	4313.0	714.0	874.0	51058.0	1323.0	1367.0	482.0	736.0	3782.0	0
MA0003.5_shift3 (TFAP2A)
; oligos_6nt_mkv2_m1 versus MA0003.5 (TFAP2A); m=2/18; ncol2=9; w=0; offset=1; strand=D; shift=3; score=0.635867; ---gCCTCAGGs-
; cor=; Ncor=
a	0	0	0	1088.0	280.0	116.0	278.0	530.0	13567.0	186.0	154.0	1221.0	0
c	0	0	0	3615.0	15321.0	15351.0	1173.0	13536.0	739.0	217.0	234.0	9445.0	0
g	0	0	0	9961.0	187.0	212.0	750.0	1406.0	1229.0	15432.0	15422.0	4098.0	0
t	0	0	0	1304.0	180.0	289.0	13767.0	496.0	433.0	133.0	158.0	1204.0	0
MA2341.1_shift5 (FEZF2)
; oligos_6nt_mkv2_m1 versus MA2341.1 (FEZF2); m=3/18; ncol2=8; w=0; offset=3; strand=D; shift=5; score=0.555887; -----CCCAGCCT
; cor=; Ncor=
a	0	0	0	0	0	17.0	5.0	4.0	231.0	6.0	8.0	7.0	14.0
c	0	0	0	0	0	202.0	206.0	258.0	15.0	8.0	224.0	247.0	10.0
g	0	0	0	0	0	10.0	9.0	0.0	14.0	251.0	28.0	2.0	8.0
t	0	0	0	0	0	36.0	45.0	3.0	5.0	0.0	5.0	9.0	233.0
MA0659.4_shift0 (Mafg)
; oligos_6nt_mkv2_m1 versus MA0659.4 (Mafg); m=4/18; ncol2=12; w=-2; offset=-2; strand=D; shift=0; score=0.547418; GmTGACTCAGCa-
; cor=; Ncor=
a	1157.0	8434.0	582.0	416.0	18141.0	831.0	804.0	695.0	18664.0	273.0	516.0	12447.0	0
c	2388.0	9862.0	928.0	397.0	410.0	15032.0	387.0	18563.0	173.0	222.0	18113.0	1934.0	0
g	15608.0	1015.0	361.0	18551.0	1193.0	3504.0	282.0	449.0	622.0	18733.0	878.0	2413.0	0
t	965.0	807.0	18247.0	754.0	374.0	751.0	18645.0	411.0	659.0	890.0	611.0	3324.0	0
MA0684.3_shift2 (RUNX3)
; oligos_6nt_mkv2_m1 versus MA0684.3 (RUNX3); m=5/18; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.544989; --AACCTCAa---
; cor=; Ncor=
a	0	0	19136.0	26243.0	427.0	495.0	6357.0	611.0	26121.0	16137.0	0	0	0
c	0	0	2662.0	315.0	26293.0	26208.0	419.0	26015.0	414.0	3077.0	0	0	0
g	0	0	3500.0	431.0	198.0	385.0	1911.0	390.0	338.0	4696.0	0	0	0
t	0	0	2079.0	388.0	459.0	289.0	18690.0	361.0	504.0	3467.0	0	0	0
MA0496.4_shift1 (MAFK)
; oligos_6nt_mkv2_m1 versus MA0496.4 (MAFK); m=6/18; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.543702; -mTGACTCAGC--
; cor=; Ncor=
a	0	14089.0	1616.0	1108.0	47484.0	2492.0	2722.0	1818.0	47675.0	1439.0	2664.0	0	0
c	0	27000.0	1568.0	1366.0	1670.0	39125.0	1133.0	47872.0	882.0	1921.0	43458.0	0	0
g	0	6706.0	1058.0	46695.0	1306.0	7573.0	1081.0	957.0	1267.0	44013.0	3327.0	0	0
t	0	3939.0	47492.0	2565.0	1274.0	2544.0	46798.0	1087.0	1910.0	4361.0	2285.0	0	0
MA2099.1_shift1 (ZNF770)
; oligos_6nt_mkv2_m1 versus MA2099.1 (ZNF770); m=7/18; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.500088; -CrGCCTCm----
; cor=; Ncor=
a	0	292.0	3968.0	179.0	101.0	37.0	87.0	35.0	9257.0	0	0	0	0
c	0	12613.0	857.0	79.0	13393.0	14096.0	140.0	14154.0	3865.0	0	0	0	0
g	0	374.0	9119.0	13947.0	681.0	133.0	215.0	86.0	485.0	0	0	0	0
t	0	1052.0	387.0	126.0	156.0	65.0	13889.0	56.0	724.0	0	0	0	0
MA1596.1_shift3 (ZNF460)
; oligos_6nt_mkv2_m1 versus MA1596.1 (ZNF460); m=8/18; ncol2=16; w=0; offset=1; strand=D; shift=3; score=0.499756; ---rCCTCmGCCT
; cor=; Ncor=
a	0	0	0	412.0	49.0	19.0	27.0	17.0	851.0	61.0	6.0	1.0	13.0
c	0	0	0	131.0	1264.0	1460.0	218.0	1519.0	495.0	23.0	1588.0	1596.0	12.0
g	0	0	0	1023.0	185.0	67.0	83.0	47.0	181.0	1493.0	7.0	9.0	17.0
t	0	0	0	46.0	114.0	66.0	1284.0	29.0	85.0	35.0	11.0	6.0	1570.0
MA1629.2_shift5 (Zic2)
; oligos_6nt_mkv2_m1 versus MA1629.2 (Zic2); m=9/18; ncol2=9; w=0; offset=3; strand=D; shift=5; score=0.481091; -----CaCAGCAG
; cor=; Ncor=
a	0	0	0	0	0	1161.0	6888.0	135.0	11074.0	140.0	80.0	10625.0	192.0
c	0	0	0	0	0	9933.0	1765.0	11476.0	391.0	228.0	11272.0	118.0	133.0
g	0	0	0	0	0	585.0	829.0	188.0	186.0	11484.0	269.0	735.0	11184.0
t	0	0	0	0	0	240.0	2437.0	120.0	268.0	67.0	298.0	441.0	410.0
MA0002.3_rc_shift1 (Runx1_rc)
; oligos_6nt_mkv2_m1 versus MA0002.3_rc (Runx1_rc); m=10/18; ncol2=9; w=-1; offset=-1; strand=R; shift=1; score=0.46842; -waaCCACAr---
; cor=; Ncor=
a	0	1053.0	1325.0	1339.0	93.0	13.0	1716.0	53.0	1936.0	656.0	0	0	0
c	0	289.0	81.0	251.0	1848.0	1987.0	70.0	1872.0	7.0	149.0	0	0	0
g	0	158.0	463.0	400.0	42.0	0.0	127.0	75.0	0.0	1072.0	0	0	0
t	0	500.0	131.0	10.0	17.0	0.0	87.0	0.0	57.0	123.0	0	0	0
MA0842.3_rc_shift4 (NRL_rc)
; oligos_6nt_mkv2_m1 versus MA0842.3_rc (NRL_rc); m=11/18; ncol2=12; w=0; offset=2; strand=R; shift=4; score=0.453502; ----cGTCAGCAy
; cor=; Ncor=
a	0	0	0	0	5030.0	2394.0	0.0	1036.0	27228.0	14.0	0.0	27228.0	6741.0
c	0	0	0	0	14528.0	559.0	4.0	27228.0	0.0	22.0	27228.0	68.0	7983.0
g	0	0	0	0	1669.0	27228.0	0.0	0.0	8.0	27228.0	0.0	2768.0	5669.0
t	0	0	0	0	6001.0	47.0	27228.0	73.0	0.0	1008.0	1.0	581.0	6835.0
MA0117.3_rc_shift5 (Mafb_rc)
; oligos_6nt_mkv2_m1 versus MA0117.3_rc (Mafb_rc); m=12/18; ncol2=11; w=0; offset=3; strand=R; shift=5; score=0.442332; -----GTCAGCAw
; cor=; Ncor=
a	0	0	0	0	0	273.0	13.0	170.0	2182.0	7.0	5.0	2182.0	611.0
c	0	0	0	0	0	490.0	17.0	2182.0	2.0	5.0	2182.0	31.0	429.0
g	0	0	0	0	0	2182.0	13.0	13.0	36.0	2182.0	14.0	618.0	398.0
t	0	0	0	0	0	182.0	2182.0	45.0	31.0	295.0	2.0	264.0	744.0
MA1997.2_shift7 (Olig2)
; oligos_6nt_mkv2_m1 versus MA1997.2 (Olig2); m=13/18; ncol2=6; w=0; offset=5; strand=D; shift=7; score=0.432974; -------CAGCTG
; cor=; Ncor=
a	0	0	0	0	0	0	0	10.0	59733.0	14.0	41.0	0.0	50.0
c	0	0	0	0	0	0	0	60968.0	668.0	18.0	61069.0	741.0	114.0
g	0	0	0	0	0	0	0	114.0	741.0	61069.0	18.0	668.0	60968.0
t	0	0	0	0	0	0	0	50.0	0.0	41.0	14.0	59733.0	10.0
MA0633.3_rc_shift7 (Twist2_rc)
; oligos_6nt_mkv2_m1 versus MA0633.3_rc (Twist2_rc); m=14/18; ncol2=6; w=0; offset=5; strand=R; shift=7; score=0.432599; -------CAGCTG
; cor=; Ncor=
a	0	0	0	0	0	0	0	15.0	48918.0	9.0	21.0	0.0	60.0
c	0	0	0	0	0	0	0	49473.0	342.0	16.0	49583.0	369.0	81.0
g	0	0	0	0	0	0	0	81.0	369.0	49583.0	16.0	345.0	49473.0
t	0	0	0	0	0	0	0	60.0	0.0	21.0	9.0	48915.0	15.0
MA1993.2_shift7 (Neurod2)
; oligos_6nt_mkv2_m1 versus MA1993.2 (Neurod2); m=15/18; ncol2=6; w=0; offset=5; strand=D; shift=7; score=0.432545; -------CAGCTG
; cor=; Ncor=
a	0	0	0	0	0	0	0	14.0	53280.0	8.0	17.0	0.0	39.0
c	0	0	0	0	0	0	0	53913.0	310.0	15.0	53984.0	434.0	58.0
g	0	0	0	0	0	0	0	58.0	434.0	53984.0	15.0	310.0	53913.0
t	0	0	0	0	0	0	0	39.0	0.0	17.0	8.0	53280.0	14.0
MA1635.2_shift7 (BHLHE22)
; oligos_6nt_mkv2_m1 versus MA1635.2 (BHLHE22); m=16/18; ncol2=6; w=0; offset=5; strand=D; shift=7; score=0.431766; -------CAGCTG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0.0	18267.0	1.0	14.0	0.0	14.0
c	0	0	0	0	0	0	0	18331.0	37.0	53.0	18288.0	52.0	15.0
g	0	0	0	0	0	0	0	11.0	52.0	18288.0	53.0	37.0	18327.0
t	0	0	0	0	0	0	0	14.0	0.0	14.0	1.0	18267.0	0.0
MA0521.3_shift7 (Tcf12)
; oligos_6nt_mkv2_m1 versus MA0521.3 (Tcf12); m=17/18; ncol2=6; w=0; offset=5; strand=D; shift=7; score=0.427876; -------CAGCTG
; cor=; Ncor=
a	0	0	0	0	0	0	0	367.0	72283.0	836.0	1565.0	341.0	549.0
c	0	0	0	0	0	0	0	72674.0	739.0	1814.0	69780.0	632.0	402.0
g	0	0	0	0	0	0	0	404.0	632.0	69780.0	1814.0	738.0	72670.0
t	0	0	0	0	0	0	0	550.0	341.0	1565.0	836.0	72284.0	374.0
MA0495.4_shift5 (MAFF)
; oligos_6nt_mkv2_m1 versus MA0495.4 (MAFF); m=18/18; ncol2=11; w=0; offset=3; strand=D; shift=5; score=0.419023; -----GTCAGCAt
; cor=; Ncor=
a	0	0	0	0	0	3943.0	575.0	1728.0	36490.0	638.0	406.0	34456.0	7639.0
c	0	0	0	0	0	4218.0	369.0	35020.0	152.0	400.0	36228.0	559.0	4360.0
g	0	0	0	0	0	27742.0	409.0	330.0	444.0	33923.0	418.0	1041.0	4442.0
t	0	0	0	0	0	1843.0	36393.0	668.0	660.0	2785.0	694.0	1690.0	21305.0