/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf
		file1	1	11	34
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m2 MA0847.4 oligos_7nt_mkv2_m2 FOXD2 0.736 0.736 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 MA0851.2 oligos_7nt_mkv2_m2 Foxj3 0.833 0.682 11 9 9 11 0.8182 0.8182 1.0000 D 0
oligos_7nt_mkv2_m2 MA1489.1 oligos_7nt_mkv2_m2 FOXN3 0.840 0.611 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_7nt_mkv2_m2 MA0614.1 oligos_7nt_mkv2_m2 Foxj2 0.839 0.610 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_7nt_mkv2_m2 MA0867.3 oligos_7nt_mkv2_m2 SOX4 0.827 0.601 11 8 8 11 0.7273 0.7273 1.0000 D 3
oligos_7nt_mkv2_m2 MA0613.1 oligos_7nt_mkv2_m2 FOXG1 0.818 0.595 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_7nt_mkv2_m2 MA0041.3 oligos_7nt_mkv2_m2 FOXD3 0.717 0.563 11 14 11 14 0.7857 1.0000 0.7857 D -3
oligos_7nt_mkv2_m2 MA1125.2 oligos_7nt_mkv2_m2 ZNF384 0.759 0.552 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv2_m2 MA0030.2 oligos_7nt_mkv2_m2 FOXF2 0.823 0.549 11 9 8 12 0.6667 0.7273 0.8889 D -1
oligos_7nt_mkv2_m2 MA1606.2 oligos_7nt_mkv2_m2 Foxf1 0.860 0.547 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_7nt_mkv2_m2 MA0040.2 oligos_7nt_mkv2_m2 Foxq1 0.727 0.545 11 10 9 12 0.7500 0.8182 0.9000 R -1
oligos_7nt_mkv2_m2 MA0084.2 oligos_7nt_mkv2_m2 SRY 0.848 0.540 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv2_m2 MA0157.4 oligos_7nt_mkv2_m2 Foxo3 0.845 0.538 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_7nt_mkv2_m2 MA0852.3 oligos_7nt_mkv2_m2 FOXK1 0.844 0.537 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_7nt_mkv2_m2 MA0480.3 oligos_7nt_mkv2_m2 Foxo1 0.844 0.537 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_7nt_mkv2_m2 MA0850.1 oligos_7nt_mkv2_m2 FOXP3 0.843 0.537 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_7nt_mkv2_m2 MA0869.3 oligos_7nt_mkv2_m2 Sox11 0.737 0.536 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv2_m2 MA0033.2 oligos_7nt_mkv2_m2 FOXL1 0.839 0.534 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_7nt_mkv2_m2 MA0593.2 oligos_7nt_mkv2_m2 FOXP2 0.798 0.532 11 9 8 12 0.6667 0.7273 0.8889 D -1
oligos_7nt_mkv2_m2 MA1103.3 oligos_7nt_mkv2_m2 FOXK2 0.830 0.528 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_7nt_mkv2_m2 MA0848.1 oligos_7nt_mkv2_m2 FOXO4 0.829 0.527 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_7nt_mkv2_m2 MA0849.1 oligos_7nt_mkv2_m2 FOXO6 0.827 0.526 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_7nt_mkv2_m2 MA2117.1 oligos_7nt_mkv2_m2 FOXP4 0.825 0.525 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_7nt_mkv2_m2 MA0031.2 oligos_7nt_mkv2_m2 FOXD1 0.821 0.522 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_7nt_mkv2_m2 MA0481.4 oligos_7nt_mkv2_m2 FOXP1 0.813 0.518 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_7nt_mkv2_m2 MA0042.2 oligos_7nt_mkv2_m2 FOXI1 0.811 0.516 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_7nt_mkv2_m2 MA1683.2 oligos_7nt_mkv2_m2 FOXA3 0.810 0.515 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_7nt_mkv2_m2 MA1152.2 oligos_7nt_mkv2_m2 SOX15 0.801 0.510 11 7 7 11 0.6364 0.6364 1.0000 R 4
oligos_7nt_mkv2_m2 MA0868.3 oligos_7nt_mkv2_m2 SOX8 0.781 0.497 11 7 7 11 0.6364 0.6364 1.0000 D 3
oligos_7nt_mkv2_m2 MA2118.1 oligos_7nt_mkv2_m2 FOXS1 0.827 0.482 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv2_m2 MA1487.3 oligos_7nt_mkv2_m2 FOXE1 0.896 0.478 11 12 8 15 0.5333 0.7273 0.6667 D -4
oligos_7nt_mkv2_m2 MA0442.3 oligos_7nt_mkv2_m2 SOX10 0.848 0.462 11 6 6 11 0.5455 0.5455 1.0000 D 4
oligos_7nt_mkv2_m2 MA0846.2 oligos_7nt_mkv2_m2 FOXC2 0.807 0.461 11 11 8 14 0.5714 0.7273 0.7273 D -3
oligos_7nt_mkv2_m2 MA0047.4 oligos_7nt_mkv2_m2 FOXA2 0.783 0.457 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv2_m2 MA1524.3 oligos_7nt_mkv2_m2 Msgn1 0.726 0.447 11 10 8 13 0.6154 0.7273 0.8000 D 3
oligos_7nt_mkv2_m2 MA1607.2 oligos_7nt_mkv2_m2 Foxl2 0.833 0.417 11 10 7 14 0.5000 0.6364 0.7000 D -3 
 Host name	rsat
 Job started	2025-05-16.174619
 Job done	2025-05-16.174639
 Seconds	3.55
	user	3.56
	system	1.07
	cuser	14.48
;	csystem	1.46