One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.174600_2025-05-16.174600_au3zWU/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift4 ; 37 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m2_shift4 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=11; shift=4; ncol=15; ----mwAAACAAAwh ; Alignment reference a 0 0 0 0 9 17 31 30 29 0 32 34 30 14 10 c 0 0 0 0 14 3 0 1 2 34 2 0 4 3 13 g 0 0 0 0 7 5 0 1 1 0 0 0 0 3 2 t 0 0 0 0 4 9 3 2 2 0 0 0 0 14 9

MA0847.4_shift4 (FOXD2)
; oligos_7nt_mkv2_m2 versus MA0847.4 (FOXD2); m=1/36; ncol2=11; w=0; offset=0; strand=D; shift=4; score=0.736369; ----yTAAryAAACA ; cor=; Ncor= a 0 0 0 0 219.0 480.0 2484.0 2484.0 2484.0 84.0 2484.0 2484.0 2484.0 0.0 2484.0 c 0 0 0 0 906.0 19.0 16.0 285.0 23.0 1342.0 81.0 23.0 0.0 2484.0 24.0 g 0 0 0 0 131.0 0.0 137.0 292.0 1615.0 3.0 0.0 18.0 5.0 0.0 34.0 t 0 0 0 0 1578.0 2004.0 0.0 262.0 4.0 1141.0 79.0 1.0 2.0 768.0 232.0

MA0851.2_shift4 (Foxj3)
; oligos_7nt_mkv2_m2 versus MA0851.2 (Foxj3); m=2/36; ncol2=9; w=0; offset=0; strand=D; shift=4; score=0.681655; ----RTAAACAAw-- ; cor=; Ncor= a 0 0 0 0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 0 0 c 0 0 0 0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 0 0 g 0 0 0 0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 0 0 t 0 0 0 0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 0 0

MA1489.1_shift4 (FOXN3)
; oligos_7nt_mkv2_m2 versus MA1489.1 (FOXN3); m=3/36; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.610794; ----GTAAACAA--- ; cor=; Ncor= a 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 c 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 g 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 t 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0

MA0614.1_shift4 (Foxj2)
; oligos_7nt_mkv2_m2 versus MA0614.1 (Foxj2); m=4/36; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.609853; ----rTAAACAa--- ; cor=; Ncor= a 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 c 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 g 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 t 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0

MA0867.3_shift7 (SOX4)
; oligos_7nt_mkv2_m2 versus MA0867.3 (SOX4); m=5/36; ncol2=8; w=0; offset=3; strand=D; shift=7; score=0.601139; -------aACAAwGr ; cor=; Ncor= a 0 0 0 0 0 0 0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 c 0 0 0 0 0 0 0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 g 0 0 0 0 0 0 0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 t 0 0 0 0 0 0 0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0

MA0613.1_shift4 (FOXG1)
; oligos_7nt_mkv2_m2 versus MA0613.1 (FOXG1); m=6/36; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.594963; ----rTAAACAw--- ; cor=; Ncor= a 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 c 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 g 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 t 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0

MA0041.3_shift1 (FOXD3)
; oligos_7nt_mkv2_m2 versus MA0041.3 (FOXD3); m=7/36; ncol2=14; w=-3; offset=-3; strand=D; shift=1; score=0.563461; -wawrhAAAYAAACa ; cor=; Ncor= a 0 86.0 120.0 91.0 56.0 99.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 13.0 125.0 c 0 22.0 17.0 45.0 17.0 109.0 37.0 8.0 1.0 43.0 4.0 11.0 17.0 171.0 20.0 g 0 13.0 52.0 45.0 115.0 8.0 1.0 0.0 7.0 0.0 2.0 8.0 20.0 13.0 30.0 t 0 85.0 22.0 81.0 10.0 171.0 2.0 7.0 2.0 128.0 7.0 11.0 35.0 30.0 47.0

MA1125.2_shift6 (ZNF384)
; oligos_7nt_mkv2_m2 versus MA1125.2 (ZNF384); m=8/36; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.551798; ------AAAAAAaa- ; cor=; Ncor= a 0 0 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 c 0 0 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 g 0 0 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 t 0 0 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0

MA0030.2_shift3 (FOXF2)
; oligos_7nt_mkv2_m2 versus MA0030.2 (FOXF2); m=9/36; ncol2=9; w=-1; offset=-1; strand=D; shift=3; score=0.548861; ---sRTAAACAa--- ; cor=; Ncor= a 0 0 0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 0 0 0 c 0 0 0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 0 0 0 g 0 0 0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0 0 0 t 0 0 0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 0 0 0

MA1606.2_shift4 (Foxf1)
; oligos_7nt_mkv2_m2 versus MA1606.2 (Foxf1); m=10/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.547217; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 0 0 0 0 c 0 0 0 0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 0 0 0 0 g 0 0 0 0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 0 0 0 0 t 0 0 0 0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 0 0 0 0

MA0040.2_rc_shift3 (Foxq1_rc)
; oligos_7nt_mkv2_m2 versus MA0040.2_rc (Foxq1_rc); m=11/36; ncol2=10; w=-1; offset=-1; strand=R; shift=3; score=0.545311; ---wATAAACAwT-- ; cor=; Ncor= a 0 0 0 9.0 13.0 0.0 18.0 18.0 18.0 0.0 15.0 11.0 1.0 0 0 c 0 0 0 3.0 4.0 1.0 0.0 0.0 0.0 18.0 0.0 0.0 3.0 0 0 g 0 0 0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.0 0 0 t 0 0 0 6.0 0.0 17.0 0.0 0.0 0.0 0.0 3.0 5.0 13.0 0 0

MA0084.2_shift6 (SRY)
; oligos_7nt_mkv2_m2 versus MA0084.2 (SRY); m=12/36; ncol2=7; w=0; offset=2; strand=D; shift=6; score=0.539527; ------waACAAw-- ; cor=; Ncor= a 0 0 0 0 0 0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 c 0 0 0 0 0 0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 t 0 0 0 0 0 0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0

MA0157.4_shift4 (Foxo3)
; oligos_7nt_mkv2_m2 versus MA0157.4 (Foxo3); m=13/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.537707; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 3470.0 1546.0 22240.0 22288.0 22551.0 403.0 22141.0 0 0 0 0 c 0 0 0 0 590.0 435.0 968.0 803.0 483.0 21237.0 587.0 0 0 0 0 g 0 0 0 0 19202.0 1199.0 328.0 333.0 464.0 361.0 361.0 0 0 0 0 t 0 0 0 0 650.0 20732.0 376.0 488.0 414.0 1911.0 823.0 0 0 0 0

MA0852.3_shift4 (FOXK1)
; oligos_7nt_mkv2_m2 versus MA0852.3 (FOXK1); m=14/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.537236; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 0 0 0 0 c 0 0 0 0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 0 0 0 0 g 0 0 0 0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 0 0 0 0 t 0 0 0 0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 0 0 0 0

MA0480.3_shift4 (Foxo1)
; oligos_7nt_mkv2_m2 versus MA0480.3 (Foxo1); m=15/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.537053; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1411.0 945.0 12408.0 12663.0 12972.0 293.0 13332.0 0 0 0 0 c 0 0 0 0 481.0 555.0 934.0 849.0 387.0 12710.0 277.0 0 0 0 0 g 0 0 0 0 11670.0 1025.0 478.0 384.0 508.0 356.0 153.0 0 0 0 0 t 0 0 0 0 554.0 11591.0 296.0 220.0 249.0 757.0 354.0 0 0 0 0

MA0850.1_shift4 (FOXP3)
; oligos_7nt_mkv2_m2 versus MA0850.1 (FOXP3); m=16/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.536547; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 c 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 g 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 t 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0

MA0869.3_shift6 (Sox11)
; oligos_7nt_mkv2_m2 versus MA0869.3 (Sox11); m=17/36; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.535674; ------GAACAAAG- ; cor=; Ncor= a 0 0 0 0 0 0 1014.0 7912.0 9856.0 119.0 10020.0 9676.0 9276.0 506.0 0 c 0 0 0 0 0 0 764.0 766.0 100.0 9471.0 108.0 264.0 61.0 148.0 0 g 0 0 0 0 0 0 8063.0 1298.0 211.0 501.0 49.0 248.0 233.0 9486.0 0 t 0 0 0 0 0 0 407.0 272.0 81.0 157.0 71.0 60.0 678.0 108.0 0

MA0033.2_shift4 (FOXL1)
; oligos_7nt_mkv2_m2 versus MA0033.2 (FOXL1); m=18/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.533705; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 c 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 g 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 t 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0

MA0593.2_shift3 (FOXP2)
; oligos_7nt_mkv2_m2 versus MA0593.2 (FOXP2); m=19/36; ncol2=9; w=-1; offset=-1; strand=D; shift=3; score=0.532108; ---wGTAAACAr--- ; cor=; Ncor= a 0 0 0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 0 0 0 c 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 0 0 0 g 0 0 0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 0 0 0 t 0 0 0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 0 0 0

MA1103.3_shift4 (FOXK2)
; oligos_7nt_mkv2_m2 versus MA1103.3 (FOXK2); m=20/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.528147; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 0 0 0 0 c 0 0 0 0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 0 0 0 0 g 0 0 0 0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 0 0 0 0 t 0 0 0 0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 0 0 0 0

MA0848.1_shift4 (FOXO4)
; oligos_7nt_mkv2_m2 versus MA0848.1 (FOXO4); m=21/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.527251; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 c 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 g 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 t 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0

MA0849.1_shift4 (FOXO6)
; oligos_7nt_mkv2_m2 versus MA0849.1 (FOXO6); m=22/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.526175; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 0 0 c 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 0 0 g 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 0 0 t 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0 0 0

MA2117.1_shift4 (FOXP4)
; oligos_7nt_mkv2_m2 versus MA2117.1 (FOXP4); m=23/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.524932; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 2224.0 543.0 19122.0 19613.0 20280.0 379.0 20230.0 0 0 0 0 c 0 0 0 0 834.0 793.0 1545.0 1330.0 419.0 18349.0 443.0 0 0 0 0 g 0 0 0 0 17315.0 539.0 534.0 368.0 550.0 493.0 218.0 0 0 0 0 t 0 0 0 0 1294.0 19792.0 466.0 356.0 418.0 2446.0 776.0 0 0 0 0

MA0031.2_shift4 (FOXD1)
; oligos_7nt_mkv2_m2 versus MA0031.2 (FOXD1); m=24/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.522212; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 0 0 0 0 c 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 0 0 0 0 g 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 0 0 0 0 t 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 0 0 0 0

MA0481.4_shift4 (FOXP1)
; oligos_7nt_mkv2_m2 versus MA0481.4 (FOXP1); m=25/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.517501; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 0 0 0 0 c 0 0 0 0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 0 0 0 0 g 0 0 0 0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 0 0 0 0 t 0 0 0 0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 0 0 0 0

MA0042.2_shift4 (FOXI1)
; oligos_7nt_mkv2_m2 versus MA0042.2 (FOXI1); m=26/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.515876; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 0 c 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 0 g 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 0 t 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0 0

MA1683.2_shift4 (FOXA3)
; oligos_7nt_mkv2_m2 versus MA1683.2 (FOXA3); m=27/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.515274; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 0 0 0 0 c 0 0 0 0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 0 0 0 0 g 0 0 0 0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 0 0 0 0 t 0 0 0 0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 0 0 0 0

MA1152.2_rc_shift8 (SOX15_rc)
; oligos_7nt_mkv2_m2 versus MA1152.2_rc (SOX15_rc); m=28/36; ncol2=7; w=0; offset=4; strand=R; shift=8; score=0.509842; --------ACAAwrr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 c 0 0 0 0 0 0 0 0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 g 0 0 0 0 0 0 0 0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 t 0 0 0 0 0 0 0 0 24.0 83.0 3.0 3.0 631.0 62.0 32.0

MA0868.3_shift7 (SOX8)
; oligos_7nt_mkv2_m2 versus MA0868.3 (SOX8); m=29/36; ncol2=7; w=0; offset=3; strand=D; shift=7; score=0.497133; -------AACAATr- ; cor=; Ncor= a 0 0 0 0 0 0 0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 0 c 0 0 0 0 0 0 0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 0 g 0 0 0 0 0 0 0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 0 t 0 0 0 0 0 0 0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 0

MA2118.1_shift3 (FOXS1)
; oligos_7nt_mkv2_m2 versus MA2118.1 (FOXS1); m=30/36; ncol2=8; w=-1; offset=-1; strand=D; shift=3; score=0.482163; ---tGTAAACA---- ; cor=; Ncor= a 0 0 0 66.0 36.0 13.0 345.0 345.0 361.0 9.0 356.0 0 0 0 0 c 0 0 0 20.0 8.0 15.0 15.0 16.0 3.0 322.0 5.0 0 0 0 0 g 0 0 0 49.0 323.0 12.0 5.0 8.0 5.0 7.0 3.0 0 0 0 0 t 0 0 0 239.0 7.0 334.0 9.0 5.0 5.0 36.0 10.0 0 0 0 0

MA1487.3_shift0 (FOXE1)
; oligos_7nt_mkv2_m2 versus MA1487.3 (FOXE1); m=31/36; ncol2=12; w=-4; offset=-4; strand=D; shift=0; score=0.477718; yTAARyAAACAa--- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0

MA0442.3_shift8 (SOX10)
; oligos_7nt_mkv2_m2 versus MA0442.3 (SOX10); m=32/36; ncol2=6; w=0; offset=4; strand=D; shift=8; score=0.46248; --------ACAAAG- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 0 c 0 0 0 0 0 0 0 0 4.0 1989.0 7.0 28.0 23.0 13.0 0 g 0 0 0 0 0 0 0 0 3.0 11.0 7.0 20.0 12.0 2012.0 0 t 0 0 0 0 0 0 0 0 25.0 52.0 12.0 39.0 61.0 20.0 0

MA0846.2_shift1 (FOXC2)
; oligos_7nt_mkv2_m2 versus MA0846.2 (FOXC2); m=33/36; ncol2=11; w=-3; offset=-3; strand=D; shift=1; score=0.461374; -wAwrTAAAYAw--- ; cor=; Ncor= a 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 0 0 c 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 0 0 g 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 0 0 t 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0 0 0

MA0047.4_shift3 (FOXA2)
; oligos_7nt_mkv2_m2 versus MA0047.4 (FOXA2); m=34/36; ncol2=8; w=-1; offset=-1; strand=D; shift=3; score=0.456933; ---wGTAAACA---- ; cor=; Ncor= a 0 0 0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 0 0 0 0 c 0 0 0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 0 0 0 0 g 0 0 0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 0 0 0 0 t 0 0 0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 0 0 0 0

MA1524.3_shift7 (Msgn1)
; oligos_7nt_mkv2_m2 versus MA1524.3 (Msgn1); m=35/36; ncol2=10; w=0; offset=3; strand=D; shift=7; score=0.446906; -------raCAAATG ; cor=; Ncor= a 0 0 0 0 0 0 0 193.0 363.0 0.0 537.0 460.0 537.0 18.0 1.0 c 0 0 0 0 0 0 0 21.0 128.0 539.0 3.0 8.0 4.0 6.0 2.0 g 0 0 0 0 0 0 0 324.0 46.0 2.0 0.0 52.0 0.0 3.0 531.0 t 0 0 0 0 0 0 0 4.0 5.0 1.0 2.0 22.0 1.0 515.0 8.0

MA1607.2_shift1 (Foxl2)
; oligos_7nt_mkv2_m2 versus MA1607.2 (Foxl2); m=36/36; ncol2=10; w=-3; offset=-3; strand=D; shift=1; score=0.416573; -waTGTAAACA---- ; cor=; Ncor= a 0 6433.0 11158.0 2985.0 2607.0 1097.0 17227.0 17212.0 17146.0 282.0 15623.0 0 0 0 0 c 0 1576.0 2051.0 896.0 367.0 301.0 558.0 336.0 216.0 15698.0 807.0 0 0 0 0 g 0 1599.0 2107.0 1371.0 14648.0 419.0 112.0 187.0 411.0 151.0 401.0 0 0 0 0 t 0 8493.0 2785.0 12849.0 479.0 16284.0 204.0 366.0 328.0 1970.0 1270.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m2_shift4 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=11; shift=4; ncol=15; ----mwAAACAAAwh ; Alignment reference a 0 0 0 0 9 17 31 30 29 0 32 34 30 14 10 c 0 0 0 0 14 3 0 1 2 34 2 0 4 3 13 g 0 0 0 0 7 5 0 1 1 0 0 0 0 3 2 t 0 0 0 0 4 9 3 2 2 0 0 0 0 14 9
MA0847.4_shift4 (FOXD2)				; oligos_7nt_mkv2_m2 versus MA0847.4 (FOXD2); m=1/36; ncol2=11; w=0; offset=0; strand=D; shift=4; score=0.736369; ----yTAAryAAACA ; cor=; Ncor= a 0 0 0 0 219.0 480.0 2484.0 2484.0 2484.0 84.0 2484.0 2484.0 2484.0 0.0 2484.0 c 0 0 0 0 906.0 19.0 16.0 285.0 23.0 1342.0 81.0 23.0 0.0 2484.0 24.0 g 0 0 0 0 131.0 0.0 137.0 292.0 1615.0 3.0 0.0 18.0 5.0 0.0 34.0 t 0 0 0 0 1578.0 2004.0 0.0 262.0 4.0 1141.0 79.0 1.0 2.0 768.0 232.0
MA0851.2_shift4 (Foxj3)				; oligos_7nt_mkv2_m2 versus MA0851.2 (Foxj3); m=2/36; ncol2=9; w=0; offset=0; strand=D; shift=4; score=0.681655; ----RTAAACAAw-- ; cor=; Ncor= a 0 0 0 0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 0 0 c 0 0 0 0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 0 0 g 0 0 0 0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 0 0 t 0 0 0 0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 0 0
MA1489.1_shift4 (FOXN3)				; oligos_7nt_mkv2_m2 versus MA1489.1 (FOXN3); m=3/36; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.610794; ----GTAAACAA--- ; cor=; Ncor= a 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 c 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 g 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 t 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0
MA0614.1_shift4 (Foxj2)				; oligos_7nt_mkv2_m2 versus MA0614.1 (Foxj2); m=4/36; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.609853; ----rTAAACAa--- ; cor=; Ncor= a 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 c 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 g 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 t 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0
MA0867.3_shift7 (SOX4)				; oligos_7nt_mkv2_m2 versus MA0867.3 (SOX4); m=5/36; ncol2=8; w=0; offset=3; strand=D; shift=7; score=0.601139; -------aACAAwGr ; cor=; Ncor= a 0 0 0 0 0 0 0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 c 0 0 0 0 0 0 0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 g 0 0 0 0 0 0 0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 t 0 0 0 0 0 0 0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0
MA0613.1_shift4 (FOXG1)				; oligos_7nt_mkv2_m2 versus MA0613.1 (FOXG1); m=6/36; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.594963; ----rTAAACAw--- ; cor=; Ncor= a 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 c 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 g 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 t 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0
MA0041.3_shift1 (FOXD3)				; oligos_7nt_mkv2_m2 versus MA0041.3 (FOXD3); m=7/36; ncol2=14; w=-3; offset=-3; strand=D; shift=1; score=0.563461; -wawrhAAAYAAACa ; cor=; Ncor= a 0 86.0 120.0 91.0 56.0 99.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 13.0 125.0 c 0 22.0 17.0 45.0 17.0 109.0 37.0 8.0 1.0 43.0 4.0 11.0 17.0 171.0 20.0 g 0 13.0 52.0 45.0 115.0 8.0 1.0 0.0 7.0 0.0 2.0 8.0 20.0 13.0 30.0 t 0 85.0 22.0 81.0 10.0 171.0 2.0 7.0 2.0 128.0 7.0 11.0 35.0 30.0 47.0
MA1125.2_shift6 (ZNF384)				; oligos_7nt_mkv2_m2 versus MA1125.2 (ZNF384); m=8/36; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.551798; ------AAAAAAaa- ; cor=; Ncor= a 0 0 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 c 0 0 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 g 0 0 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 t 0 0 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0
MA0030.2_shift3 (FOXF2)				; oligos_7nt_mkv2_m2 versus MA0030.2 (FOXF2); m=9/36; ncol2=9; w=-1; offset=-1; strand=D; shift=3; score=0.548861; ---sRTAAACAa--- ; cor=; Ncor= a 0 0 0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 0 0 0 c 0 0 0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 0 0 0 g 0 0 0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0 0 0 t 0 0 0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 0 0 0
MA1606.2_shift4 (Foxf1)				; oligos_7nt_mkv2_m2 versus MA1606.2 (Foxf1); m=10/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.547217; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 0 0 0 0 c 0 0 0 0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 0 0 0 0 g 0 0 0 0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 0 0 0 0 t 0 0 0 0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 0 0 0 0
MA0040.2_rc_shift3 (Foxq1_rc)				; oligos_7nt_mkv2_m2 versus MA0040.2_rc (Foxq1_rc); m=11/36; ncol2=10; w=-1; offset=-1; strand=R; shift=3; score=0.545311; ---wATAAACAwT-- ; cor=; Ncor= a 0 0 0 9.0 13.0 0.0 18.0 18.0 18.0 0.0 15.0 11.0 1.0 0 0 c 0 0 0 3.0 4.0 1.0 0.0 0.0 0.0 18.0 0.0 0.0 3.0 0 0 g 0 0 0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.0 0 0 t 0 0 0 6.0 0.0 17.0 0.0 0.0 0.0 0.0 3.0 5.0 13.0 0 0
MA0084.2_shift6 (SRY)				; oligos_7nt_mkv2_m2 versus MA0084.2 (SRY); m=12/36; ncol2=7; w=0; offset=2; strand=D; shift=6; score=0.539527; ------waACAAw-- ; cor=; Ncor= a 0 0 0 0 0 0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 c 0 0 0 0 0 0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 t 0 0 0 0 0 0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0
MA0157.4_shift4 (Foxo3)				; oligos_7nt_mkv2_m2 versus MA0157.4 (Foxo3); m=13/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.537707; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 3470.0 1546.0 22240.0 22288.0 22551.0 403.0 22141.0 0 0 0 0 c 0 0 0 0 590.0 435.0 968.0 803.0 483.0 21237.0 587.0 0 0 0 0 g 0 0 0 0 19202.0 1199.0 328.0 333.0 464.0 361.0 361.0 0 0 0 0 t 0 0 0 0 650.0 20732.0 376.0 488.0 414.0 1911.0 823.0 0 0 0 0
MA0852.3_shift4 (FOXK1)				; oligos_7nt_mkv2_m2 versus MA0852.3 (FOXK1); m=14/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.537236; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 0 0 0 0 c 0 0 0 0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 0 0 0 0 g 0 0 0 0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 0 0 0 0 t 0 0 0 0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 0 0 0 0
MA0480.3_shift4 (Foxo1)				; oligos_7nt_mkv2_m2 versus MA0480.3 (Foxo1); m=15/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.537053; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1411.0 945.0 12408.0 12663.0 12972.0 293.0 13332.0 0 0 0 0 c 0 0 0 0 481.0 555.0 934.0 849.0 387.0 12710.0 277.0 0 0 0 0 g 0 0 0 0 11670.0 1025.0 478.0 384.0 508.0 356.0 153.0 0 0 0 0 t 0 0 0 0 554.0 11591.0 296.0 220.0 249.0 757.0 354.0 0 0 0 0
MA0850.1_shift4 (FOXP3)				; oligos_7nt_mkv2_m2 versus MA0850.1 (FOXP3); m=16/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.536547; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 c 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 g 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 t 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0
MA0869.3_shift6 (Sox11)				; oligos_7nt_mkv2_m2 versus MA0869.3 (Sox11); m=17/36; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.535674; ------GAACAAAG- ; cor=; Ncor= a 0 0 0 0 0 0 1014.0 7912.0 9856.0 119.0 10020.0 9676.0 9276.0 506.0 0 c 0 0 0 0 0 0 764.0 766.0 100.0 9471.0 108.0 264.0 61.0 148.0 0 g 0 0 0 0 0 0 8063.0 1298.0 211.0 501.0 49.0 248.0 233.0 9486.0 0 t 0 0 0 0 0 0 407.0 272.0 81.0 157.0 71.0 60.0 678.0 108.0 0
MA0033.2_shift4 (FOXL1)				; oligos_7nt_mkv2_m2 versus MA0033.2 (FOXL1); m=18/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.533705; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 c 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 g 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 t 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0
MA0593.2_shift3 (FOXP2)				; oligos_7nt_mkv2_m2 versus MA0593.2 (FOXP2); m=19/36; ncol2=9; w=-1; offset=-1; strand=D; shift=3; score=0.532108; ---wGTAAACAr--- ; cor=; Ncor= a 0 0 0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 0 0 0 c 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 0 0 0 g 0 0 0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 0 0 0 t 0 0 0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 0 0 0
MA1103.3_shift4 (FOXK2)				; oligos_7nt_mkv2_m2 versus MA1103.3 (FOXK2); m=20/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.528147; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 0 0 0 0 c 0 0 0 0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 0 0 0 0 g 0 0 0 0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 0 0 0 0 t 0 0 0 0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 0 0 0 0
MA0848.1_shift4 (FOXO4)				; oligos_7nt_mkv2_m2 versus MA0848.1 (FOXO4); m=21/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.527251; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 c 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 g 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 t 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0
MA0849.1_shift4 (FOXO6)				; oligos_7nt_mkv2_m2 versus MA0849.1 (FOXO6); m=22/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.526175; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 0 0 c 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 0 0 g 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 0 0 t 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0 0 0
MA2117.1_shift4 (FOXP4)				; oligos_7nt_mkv2_m2 versus MA2117.1 (FOXP4); m=23/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.524932; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 2224.0 543.0 19122.0 19613.0 20280.0 379.0 20230.0 0 0 0 0 c 0 0 0 0 834.0 793.0 1545.0 1330.0 419.0 18349.0 443.0 0 0 0 0 g 0 0 0 0 17315.0 539.0 534.0 368.0 550.0 493.0 218.0 0 0 0 0 t 0 0 0 0 1294.0 19792.0 466.0 356.0 418.0 2446.0 776.0 0 0 0 0
MA0031.2_shift4 (FOXD1)				; oligos_7nt_mkv2_m2 versus MA0031.2 (FOXD1); m=24/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.522212; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 0 0 0 0 c 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 0 0 0 0 g 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 0 0 0 0 t 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 0 0 0 0
MA0481.4_shift4 (FOXP1)				; oligos_7nt_mkv2_m2 versus MA0481.4 (FOXP1); m=25/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.517501; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 0 0 0 0 c 0 0 0 0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 0 0 0 0 g 0 0 0 0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 0 0 0 0 t 0 0 0 0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 0 0 0 0
MA0042.2_shift4 (FOXI1)				; oligos_7nt_mkv2_m2 versus MA0042.2 (FOXI1); m=26/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.515876; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 0 c 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 0 g 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 0 t 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0 0
MA1683.2_shift4 (FOXA3)				; oligos_7nt_mkv2_m2 versus MA1683.2 (FOXA3); m=27/36; ncol2=7; w=0; offset=0; strand=D; shift=4; score=0.515274; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 0 0 0 0 c 0 0 0 0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 0 0 0 0 g 0 0 0 0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 0 0 0 0 t 0 0 0 0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 0 0 0 0
MA1152.2_rc_shift8 (SOX15_rc)				; oligos_7nt_mkv2_m2 versus MA1152.2_rc (SOX15_rc); m=28/36; ncol2=7; w=0; offset=4; strand=R; shift=8; score=0.509842; --------ACAAwrr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 c 0 0 0 0 0 0 0 0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 g 0 0 0 0 0 0 0 0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 t 0 0 0 0 0 0 0 0 24.0 83.0 3.0 3.0 631.0 62.0 32.0
MA0868.3_shift7 (SOX8)				; oligos_7nt_mkv2_m2 versus MA0868.3 (SOX8); m=29/36; ncol2=7; w=0; offset=3; strand=D; shift=7; score=0.497133; -------AACAATr- ; cor=; Ncor= a 0 0 0 0 0 0 0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 0 c 0 0 0 0 0 0 0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 0 g 0 0 0 0 0 0 0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 0 t 0 0 0 0 0 0 0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 0
MA2118.1_shift3 (FOXS1)				; oligos_7nt_mkv2_m2 versus MA2118.1 (FOXS1); m=30/36; ncol2=8; w=-1; offset=-1; strand=D; shift=3; score=0.482163; ---tGTAAACA---- ; cor=; Ncor= a 0 0 0 66.0 36.0 13.0 345.0 345.0 361.0 9.0 356.0 0 0 0 0 c 0 0 0 20.0 8.0 15.0 15.0 16.0 3.0 322.0 5.0 0 0 0 0 g 0 0 0 49.0 323.0 12.0 5.0 8.0 5.0 7.0 3.0 0 0 0 0 t 0 0 0 239.0 7.0 334.0 9.0 5.0 5.0 36.0 10.0 0 0 0 0
MA1487.3_shift0 (FOXE1)				; oligos_7nt_mkv2_m2 versus MA1487.3 (FOXE1); m=31/36; ncol2=12; w=-4; offset=-4; strand=D; shift=0; score=0.477718; yTAARyAAACAa--- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0
MA0442.3_shift8 (SOX10)				; oligos_7nt_mkv2_m2 versus MA0442.3 (SOX10); m=32/36; ncol2=6; w=0; offset=4; strand=D; shift=8; score=0.46248; --------ACAAAG- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 0 c 0 0 0 0 0 0 0 0 4.0 1989.0 7.0 28.0 23.0 13.0 0 g 0 0 0 0 0 0 0 0 3.0 11.0 7.0 20.0 12.0 2012.0 0 t 0 0 0 0 0 0 0 0 25.0 52.0 12.0 39.0 61.0 20.0 0
MA0846.2_shift1 (FOXC2)				; oligos_7nt_mkv2_m2 versus MA0846.2 (FOXC2); m=33/36; ncol2=11; w=-3; offset=-3; strand=D; shift=1; score=0.461374; -wAwrTAAAYAw--- ; cor=; Ncor= a 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 0 0 c 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 0 0 g 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 0 0 t 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0 0 0
MA0047.4_shift3 (FOXA2)				; oligos_7nt_mkv2_m2 versus MA0047.4 (FOXA2); m=34/36; ncol2=8; w=-1; offset=-1; strand=D; shift=3; score=0.456933; ---wGTAAACA---- ; cor=; Ncor= a 0 0 0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 0 0 0 0 c 0 0 0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 0 0 0 0 g 0 0 0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 0 0 0 0 t 0 0 0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 0 0 0 0
MA1524.3_shift7 (Msgn1)				; oligos_7nt_mkv2_m2 versus MA1524.3 (Msgn1); m=35/36; ncol2=10; w=0; offset=3; strand=D; shift=7; score=0.446906; -------raCAAATG ; cor=; Ncor= a 0 0 0 0 0 0 0 193.0 363.0 0.0 537.0 460.0 537.0 18.0 1.0 c 0 0 0 0 0 0 0 21.0 128.0 539.0 3.0 8.0 4.0 6.0 2.0 g 0 0 0 0 0 0 0 324.0 46.0 2.0 0.0 52.0 0.0 3.0 531.0 t 0 0 0 0 0 0 0 4.0 5.0 1.0 2.0 22.0 1.0 515.0 8.0
MA1607.2_shift1 (Foxl2)				; oligos_7nt_mkv2_m2 versus MA1607.2 (Foxl2); m=36/36; ncol2=10; w=-3; offset=-3; strand=D; shift=1; score=0.416573; -waTGTAAACA---- ; cor=; Ncor= a 0 6433.0 11158.0 2985.0 2607.0 1097.0 17227.0 17212.0 17146.0 282.0 15623.0 0 0 0 0 c 0 1576.0 2051.0 896.0 367.0 301.0 558.0 336.0 216.0 15698.0 807.0 0 0 0 0 g 0 1599.0 2107.0 1371.0 14648.0 419.0 112.0 187.0 411.0 151.0 401.0 0 0 0 0 t 0 8493.0 2785.0 12849.0 479.0 16284.0 204.0 366.0 328.0 1970.0 1270.0 0 0 0 0